Debian NEW package overview for mcl14
| mcl14_14-137+ocaml-1_amd64.changes (click to toggle) | |
|---|---|
| Format: | 1.8 |
| Date: | Sat, 24 Feb 2024 21:36:26 +0100 |
| Source: | mcl14 |
| Binary: | libmcl14-ocaml-dev libmcl14-ocaml-dev-dbgsym |
| Architecture: | source amd64 |
| Version: | 14-137+ocaml-1 |
| Distribution: | unstable |
| Urgency: | medium |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Changed-By: | Andreas Tille <tille@debian.org> |
| Description: | libmcl14-ocaml-dev - library providing bindings between mcl and OCaml |
| Closes: | 1064596 |
| Changes: | mcl14 (14-137+ocaml-1) unstable; urgency=medium
* This is a new package featuring the old version 14-137 which has OCaml
support which is needed for pplacer
Closes: 1064596
* d/watch: Restrict to version 14-*
* Standards-Version: 4.6.2 (routine-update)
* Remove trailing whitespace in debian/copyright (routine-update)
* Avoid epoch since its a new version but add +ocaml suffix to make
sure version is higher than before
* Use mcl14-ocaml-dev as binary package name to avoid keeping epoch
for ever (oldstable already has version 1:14-137+ds-9+b1)
* Silence lintian a bit
* Add DEP3 Forwarded header |
| Files: | f40a1aad3d420d17ac30b3d3d0724812 2118 math optional mcl14_14-137+ocaml-1.dsc 52f108dfc578823acce7c8193ea63a20 1684744 math optional mcl14_14-137+ocaml.orig.tar.xz 74442d3bc3ce20d42f0a6e61b054ea42 53184 math optional mcl14_14-137+ocaml-1.debian.tar.xz 1596bf04eb0653a645b0631ae2ebc6f2 30860 debug optional libmcl14-ocaml-dev-dbgsym_14-137+ocaml-1_amd64.deb 862c89cf0dee36482adee2d321dfb011 254288 ocaml optional libmcl14-ocaml-dev_14-137+ocaml-1_amd64.deb bc69dbd5d76ea62ae7f04a7acb01b479 6993 math optional mcl14_14-137+ocaml-1_amd64.buildinfo |
| mcl14_14-137+ocaml-1.dsc (click to toggle) | |
|---|---|
| Format: | 3.0 (quilt) |
| Source: | mcl14 |
| Binary: | libmcl14-ocaml-dev |
| Architecture: | any |
| Version: | 14-137+ocaml-1 |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Uploaders: | Andreas Tille <tille@debian.org>, Shayan Doust <hello@shayandoust.me> |
| Homepage: | https://micans.org/mcl/ |
| Standards-Version: | 4.6.2 |
| Vcs-Browser: | https://salsa.debian.org/med-team/mcl14 |
| Vcs-Git: | https://salsa.debian.org/med-team/mcl14.git |
| Build-Depends: | debhelper-compat (=13), dh-ocaml, zoem, tidy, aephea, ocaml, ocamlbuild, ocaml-findlib, oasis, bsdextrautils, dh-exec, libtingea-dev |
| Package-List: | libmcl14-ocaml-dev deb ocaml optional arch=any |
| Files: | 52f108dfc578823acce7c8193ea63a20 1684744 mcl14_14-137+ocaml.orig.tar.xz 74442d3bc3ce20d42f0a6e61b054ea42 53184 mcl14_14-137+ocaml-1.debian.tar.xz |
| README.source for mcl14_14-137+ocaml-1.dsc (click to toggle) | |
|---|---|
01-manpage-errors.patch: remove spaces in the program name (which is not allowed in manuals) 02-wrong-interpreter-path.patch: fix perl interpreter paths -- Philipp Benner <philipp@debian.org>, Thu, 1 Oct 2009 13:38:53 +0000 | |
| control file for libmcl14-ocaml-dev_14-137+ocaml-1_amd64.deb (click to toggle) | |
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| Package: | libmcl14-ocaml-dev |
| Source: | mcl14 |
| Version: | 14-137+ocaml-1 |
| Architecture: | amd64 |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Installed-Size: | 1978 |
| Depends: | ocaml-findlib, libstdlib-ocaml-dev-ep7y0, ocaml-4.14.1, libc6 (>=2.34) |
| Provides: | libmcl14-ocaml-dev-g5ch9 |
| Section: | ocaml |
| Priority: | optional |
| Homepage: | https://micans.org/mcl/ |
| Description: | library providing bindings between mcl and OCaml The MCL package is an implementation of the MCL algorithm, and offers utilities for manipulating sparse matrices (the essential data structure in the MCL algorithm) and conducting cluster experiments. . This library provides bindings between mcl and OCaml. . This OCaml code is based on a patch for mcl version 14. Unfortunately the attempt to port the patch to latest mcl did not succeeded. |
| contents of libmcl14-ocaml-dev_14-137+ocaml-1_amd64.deb (click to toggle) | |
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drwxr-xr-x root/root 0 2024-02-24 20:36 ./ drwxr-xr-x root/root 0 2024-02-24 20:36 ./usr/ drwxr-xr-x root/root 0 2024-02-24 20:36 ./usr/lib/ drwxr-xr-x root/root 0 2024-02-24 20:36 ./usr/lib/ocaml/ -rw-r--r-- root/root 1880 2024-02-24 20:36 ./usr/lib/ocaml/caml_mcl.c -rw-r--r-- root/root 25904 2024-02-24 20:36 ./usr/lib/ocaml/caml_mcl.o -rw-r--r-- root/root 433016 2024-02-24 20:36 ./usr/lib/ocaml/dllmcl_stubs.so -rw-r--r-- root/root 648882 2024-02-24 20:36 ./usr/lib/ocaml/libmcl_stubs.a -rw-r--r-- root/root 741 2024-02-24 20:36 ./usr/lib/ocaml/libmcl_stubs.clib drwxr-xr-x root/root 0 2024-02-24 20:36 ./usr/lib/ocaml/mcl/ -rw-r--r-- root/root 327 2024-02-24 20:36 ./usr/lib/ocaml/mcl/META -rw-r--r-- root/root 1966 2024-02-24 20:36 ./usr/lib/ocaml/mcl.a -rw-r--r-- root/root 0 2024-02-24 20:36 ./usr/lib/ocaml/mcl.annot -rw-r--r-- root/root 2145 2024-02-24 20:36 ./usr/lib/ocaml/mcl.cma -rw-r--r-- root/root 460 2024-02-24 20:36 ./usr/lib/ocaml/mcl.cmi -rw-r--r-- root/root 2112 2024-02-24 20:36 ./usr/lib/ocaml/mcl.cmo -rw-r--r-- root/root 3130 2024-02-24 20:36 ./usr/lib/ocaml/mcl.cmt -rw-r--r-- root/root 166 2024-02-24 20:36 ./usr/lib/ocaml/mcl.cmx -rw-r--r-- root/root 185 2024-02-24 20:36 ./usr/lib/ocaml/mcl.cmxa -rw-r--r-- root/root 383088 2024-02-24 20:36 ./usr/lib/ocaml/mcl.cmxs -rw-r--r-- root/root 92 2024-02-24 20:36 ./usr/lib/ocaml/mcl.ml -rw-r--r-- root/root 13 2024-02-24 20:36 ./usr/lib/ocaml/mcl.ml.depends -rw-r--r-- root/root 88 2024-02-24 20:36 ./usr/lib/ocaml/mcl.mldylib -rw-r--r-- root/root 88 2024-02-24 20:36 ./usr/lib/ocaml/mcl.mllib -rw-r--r-- root/root 1664 2024-02-24 20:36 ./usr/lib/ocaml/mcl.o drwxr-xr-x root/root 0 2024-02-24 20:36 ./usr/lib/x86_64-linux-gnu/ -rw-r--r-- root/root 67420 2024-02-24 20:36 ./usr/lib/x86_64-linux-gnu/libclew.a -rw-r--r-- root/root 11982 2024-02-24 20:36 ./usr/lib/x86_64-linux-gnu/libgryphon.a -rw-r--r-- root/root 215306 2024-02-24 20:36 ./usr/lib/x86_64-linux-gnu/libimpala.a -rw-r--r-- root/root 158720 2024-02-24 20:36 ./usr/lib/x86_64-linux-gnu/libmcl.a drwxr-xr-x root/root 0 2024-02-24 20:36 ./usr/share/ drwxr-xr-x root/root 0 2024-02-24 20:36 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-02-24 20:36 ./usr/share/doc/libmcl14-ocaml-dev/ -rw-r--r-- root/root 1415 2024-02-24 20:36 ./usr/share/doc/libmcl14-ocaml-dev/changelog.Debian.gz -rw-r--r-- root/root 26194 2024-02-24 20:36 ./usr/share/doc/libmcl14-ocaml-dev/changelog.gz -rw-r--r-- root/root 2882 2024-02-24 20:36 ./usr/share/doc/libmcl14-ocaml-dev/copyright drwxr-xr-x root/root 0 2024-02-24 20:36 ./usr/share/lintian/ drwxr-xr-x root/root 0 2024-02-24 20:36 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 55 2024-02-24 20:36 ./usr/share/lintian/overrides/libmcl14-ocaml-dev drwxr-xr-x root/root 0 2024-02-24 20:36 ./var/ drwxr-xr-x root/root 0 2024-02-24 20:36 ./var/lib/ drwxr-xr-x root/root 0 2024-02-24 20:36 ./var/lib/ocaml/ drwxr-xr-x root/root 0 2024-02-24 20:36 ./var/lib/ocaml/lintian/ -rw-r--r-- root/root 175 2024-02-24 20:36 ./var/lib/ocaml/lintian/libmcl14-ocaml-dev.info drwxr-xr-x root/root 0 2024-02-24 20:36 ./var/lib/ocaml/md5sums/ -rw-r--r-- root/root 158 2024-02-24 20:36 ./var/lib/ocaml/md5sums/libmcl14-ocaml-dev.md5sums | |
| copyright of libmcl14-ocaml-dev_14-137+ocaml-1_amd64.deb (click to toggle) | |
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Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Source: http://micans.org/mcl/src/
Files-Excluded: */*.1
*/doc/*.ps
*/*.html
*/Makefile.in
Upstream-Name: mcl
Files: *
Copyright: © 1999-2014 Stijn van Dongen <stijn@micans.org>
License: GPL-3+
Comment: Citation
If you use MCL software in your scientific research, please cite it
appropriately as you would cite a journal or a book. This includes papers
published in regular or electronic journals, usage of MCL as a back-end to a
database that is accessible via a web interface, or inclusion of MCL in a
larger framework of software that is distributed for other people for
scientific use. Include one of the following citations:
.
Stijn van Dongen, Graph Clustering by Flow Simulation.
PhD thesis, University of Utrecht, May 2000.
( http://www.library.uu.nl/digiarchief/dip/diss/1895620/inhoud.htm )
.
Stijn van Dongen. A cluster algorithm for graphs. Technical Report
INS-R0010, National Research Institute for Mathematics and Computer
Science in the Netherlands, Amsterdam, May 2000.
( http://www.cwi.nl/ftp/CWIreports/INS/INS-R0010.ps.Z )
.
and proper attributions to mcl's home http://micans.org/mcl/
and its author, Stijn van Dongen.
The publications listed above can be retrieved from the preceding URL.
.
If you are using some wrapper around mcl such as the blast module or the
tribe module, you are asked to act likewise.
.
For biological applications, it is appropriate to cite, additionally,
the reference article for the first application of mcl to biological data:
.
Enright A.J., Van Dongen S., Ouzounis C.A.
An efficient algorithm for large-scale detection of protein families,
Nucleic Acids Research 30(7):1575-1584 (2002).
Files: src/alien/oxygen/src/mcxdeblast
Copyright: © 2002-2009 Stijn van Dongen,
© 2004 Jason Stajich
License: GPL-3+
Files: util/rand.*
Copyright: © 2004-2009 Stijn van Dongen,
© 2005 Jochen Voss
License: GPL-3+
Files: debian/*
Copyright: © 2001-2007 Joost van Baal <joostvb@debian.org>,
© 2007-2013 Philipp Benner <philipp@debian.org>,
© 2014-2017 Andreas Tille <tille@debian.org>
License: GPL-3+
License: GPL-3+
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 3 of the License, or
(at your option) any later version.
.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
.
On Debian systems you can find the full text of the GNU General Public
License version 3 at /usr/share/common-licenses/GPL-3.
| |
| control file for libmcl14-ocaml-dev-dbgsym_14-137+ocaml-1_amd64.deb (click to toggle) | |
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| Package: | libmcl14-ocaml-dev-dbgsym |
| Source: | mcl14 |
| Version: | 14-137+ocaml-1 |
| Auto-Built-Package: | debug-symbols |
| Architecture: | amd64 |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Installed-Size: | 110 |
| Depends: | libmcl14-ocaml-dev (=14-137+ocaml-1) |
| Section: | debug |
| Priority: | optional |
| Description: | debug symbols for libmcl14-ocaml-dev |
| Build-Ids: | 1097e0e8e941aa81e5acb5529075ad483e9422f3 57e6dd6eea7976cb06422a83744e981aaa9863a0 |
| contents of libmcl14-ocaml-dev-dbgsym_14-137+ocaml-1_amd64.deb (click to toggle) | |
|---|---|
drwxr-xr-x root/root 0 2024-02-24 20:36 ./ drwxr-xr-x root/root 0 2024-02-24 20:36 ./usr/ drwxr-xr-x root/root 0 2024-02-24 20:36 ./usr/lib/ drwxr-xr-x root/root 0 2024-02-24 20:36 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-02-24 20:36 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-02-24 20:36 ./usr/lib/debug/.build-id/10/ -rw-r--r-- root/root 47624 2024-02-24 20:36 ./usr/lib/debug/.build-id/10/97e0e8e941aa81e5acb5529075ad483e9422f3.debug drwxr-xr-x root/root 0 2024-02-24 20:36 ./usr/lib/debug/.build-id/57/ -rw-r--r-- root/root 44408 2024-02-24 20:36 ./usr/lib/debug/.build-id/57/e6dd6eea7976cb06422a83744e981aaa9863a0.debug drwxr-xr-x root/root 0 2024-02-24 20:36 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2024-02-24 20:36 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 5288 2024-02-24 20:36 ./usr/lib/debug/.dwz/x86_64-linux-gnu/libmcl14-ocaml-dev.debug drwxr-xr-x root/root 0 2024-02-24 20:36 ./usr/share/ drwxr-xr-x root/root 0 2024-02-24 20:36 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-02-24 20:36 ./usr/share/doc/libmcl14-ocaml-dev-dbgsym -> libmcl14-ocaml-dev | |
| copyright of libmcl14-ocaml-dev-dbgsym_14-137+ocaml-1_amd64.deb (click to toggle) | |
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WARNING: No copyright found, please check package manually. | |
Timestamp: 25.04.2024 / 16:02:25 (UTC)