Debian NEW package overview for mcaller
mcaller_1.0.3+git20210624.b415090-1_amd64.changes (click to toggle)
Format:1.8
Date:Fri, 01 Oct 2021 14:17:38 +0200
Source:mcaller
Binary:mcaller
Architecture:source all
Version:1.0.3+git20210624.b415090-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Steffen Moeller <moeller@debian.org>
Description:
mcaller    - find methylation in nanopore reads
Closes:969558
Changes:
mcaller (1.0.3+git20210624.b415090-1) unstable; urgency=medium

  * Initial release (Closes: #969558)
Files:
6113ca285535ebdaf83ae54b79d28847 2210 science optional mcaller_1.0.3+git20210624.b415090-1.dsc
6d969880db638213a6e7389af1322483 6612544 science optional mcaller_1.0.3+git20210624.b415090.orig.tar.xz
f206d12fe73f628dd82601d9798e27df 6904 science optional mcaller_1.0.3+git20210624.b415090-1.debian.tar.xz
51fa7dd676b15f4b6cedb51206f2f2ea 18848 science optional mcaller_1.0.3+git20210624.b415090-1_all.deb
5682b6052bdaac4441338ab7e1759c6e 9193 science optional mcaller_1.0.3+git20210624.b415090-1_amd64.buildinfo
mcaller_1.0.3+git20210624.b415090-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:mcaller
Binary:mcaller
Architecture:all
Version:1.0.3+git20210624.b415090-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Steffen Moeller <moeller@debian.org>
Homepage:https://github.com/al-mcintyre/mCaller
Standards-Version:4.6.0
Vcs-Browser:https://salsa.debian.org/med-team/mcaller
Vcs-Git:https://salsa.debian.org/med-team/mcaller.git
Testsuite:autopkgtest, autopkgtest-pkg-python
Build-Depends:debhelper-compat (=13), dh-python, python3-all, python3-setuptools, python3-seaborn, python3-biopython, python3-numpy, python3-sklearn
Package-List:mcaller deb science optional arch=all
Files:
6d969880db638213a6e7389af1322483 6612544 mcaller_1.0.3+git20210624.b415090.orig.tar.xz
f206d12fe73f628dd82601d9798e27df 6904 mcaller_1.0.3+git20210624.b415090-1.debian.tar.xz
lintian 2.94.0~bpo10+1 check for mcaller_1.0.3+git20210624.b415090-1.dsc (click to toggle)
README.source for mcaller_1.0.3+git20210624.b415090-1.dsc (click to toggle)
No README.source in this package
control file for mcaller_1.0.3+git20210624.b415090-1_all.deb (click to toggle)
Package:mcaller
Version:1.0.3+git20210624.b415090-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:83
Depends:python3, python3-sklearn, python3-h5py, python3-biopython, python3-matplotlib, python3-seaborn, python3-numpy, python3-pysam, python3-scipy, python3-pandas
Recommends:nanopolish | poretools
Suggests:graphmap, bwa
Section:science
Priority:optional
Homepage:https://github.com/al-mcintyre/mCaller
Description:
find methylation in nanopore reads
    H
    |
  H-C-aller
    |
    H
 .
 This program is designed to call m6A from nanopore data using the
 differences between measured and expected currents.
lintian 2.94.0~bpo10+1 check for mcaller_1.0.3+git20210624.b415090-1_all.deb (click to toggle)
contents of mcaller_1.0.3+git20210624.b415090-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2021-10-01 12:17 ./
drwxr-xr-x root/root         0 2021-10-01 12:17 ./usr/
drwxr-xr-x root/root         0 2021-10-01 12:17 ./usr/bin/
drwxr-xr-x root/root         0 2021-10-01 12:17 ./usr/lib/
drwxr-xr-x root/root         0 2021-10-01 12:17 ./usr/lib/debian-med/
drwxr-xr-x root/root         0 2021-10-01 12:17 ./usr/lib/debian-med/bin/
drwxr-xr-x root/root         0 2021-10-01 12:17 ./usr/share/
drwxr-xr-x root/root         0 2021-10-01 12:17 ./usr/share/doc/
drwxr-xr-x root/root         0 2021-10-01 12:17 ./usr/share/doc/mcaller/
-rw-r--r-- root/root       173 2021-10-01 12:17 ./usr/share/doc/mcaller/changelog.Debian.gz
-rw-r--r-- root/root      1341 2021-10-01 12:17 ./usr/share/doc/mcaller/copyright
drwxr-xr-x root/root         0 2021-10-01 12:17 ./usr/share/lintian/
drwxr-xr-x root/root         0 2021-10-01 12:17 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       423 2021-10-01 12:17 ./usr/share/lintian/overrides/mcaller
drwxr-xr-x root/root         0 2021-10-01 12:17 ./usr/share/mCaller/
-rwxr-xr-x root/root      2484 2021-10-01 12:17 ./usr/share/mCaller/compare_genomes.py
-rw-r--r-- root/root     15821 2021-10-01 12:17 ./usr/share/mCaller/extract_contexts.py
-rw-r--r-- root/root      1054 2021-10-01 12:17 ./usr/share/mCaller/load_mCaller_data.py
-rwxr-xr-x root/root      9419 2021-10-01 12:17 ./usr/share/mCaller/mCaller.py
-rwxr-xr-x root/root     10403 2021-10-01 12:17 ./usr/share/mCaller/make_bed.py
-rw-r--r-- root/root      4007 2021-10-01 12:17 ./usr/share/mCaller/plotlib.py
-rw-r--r-- root/root       625 2021-10-01 12:17 ./usr/share/mCaller/read_qual.py
-rw-r--r-- root/root      5701 2021-10-01 12:17 ./usr/share/mCaller/train_model.py
drwxr-xr-x root/root         0 2021-10-01 12:17 ./usr/share/man/
drwxr-xr-x root/root         0 2021-10-01 12:17 ./usr/share/man/man1/
-rw-r--r-- root/root       512 2021-10-01 12:17 ./usr/share/man/man1/compare_genomes.1.gz
-rw-r--r-- root/root      1280 2021-10-01 12:17 ./usr/share/man/man1/mCaller.1.gz
-rw-r--r-- root/root      1105 2021-10-01 12:17 ./usr/share/man/man1/make_bed.1.gz
lrwxrwxrwx root/root         0 2021-10-01 12:17 ./usr/bin/compare_genomes -> ../share/mCaller/compare_genomes.py
lrwxrwxrwx root/root         0 2021-10-01 12:17 ./usr/bin/mCaller -> ../share/mCaller/mCaller.py
lrwxrwxrwx root/root         0 2021-10-01 12:17 ./usr/bin/make_bed -> ../share/mCaller/make_bed.py
lrwxrwxrwx root/root         0 2021-10-01 12:17 ./usr/lib/debian-med/bin/compare_genomes.py -> ../../../share/mCaller/compare_genomes.py
lrwxrwxrwx root/root         0 2021-10-01 12:17 ./usr/lib/debian-med/bin/mCaller.py -> ../../../share/mCaller/mCaller.py
lrwxrwxrwx root/root         0 2021-10-01 12:17 ./usr/lib/debian-med/bin/make_bed.py -> ../../../share/mCaller/make_bed.py

Timestamp: 01.10.2021 / 13:01:04 (UTC)