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libseqlib_1.1.1+dfsg-1_amd64.changes (click to toggle)
Format:1.8
Date:Fri, 10 Feb 2017 10:16:57 +0100
Source:libseqlib
Binary:libseqlib0 libseqlib-dev
Architecture:source amd64
Version:1.1.1+dfsg-1
Distribution:experimental
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Andreas Tille <tille@debian.org>
Description:
libseqlib-dev - C++ htslib/bwa-mem/fermi interface for interrogating sequence dat
libseqlib0 - C++ htslib/bwa-mem/fermi interface for interrogating sequence dat
Closes:854774
Changes:
libseqlib (1.1.1+dfsg-1) experimental; urgency=medium

  * Initial release (Closes: #854774)
Files:
951ef14b54886c29b0ec38c390f15367 2188 science optional libseqlib_1.1.1+dfsg-1.dsc
e40613c3d7dfccc2a8b6828a5348350f 162924 science optional libseqlib_1.1.1+dfsg.orig.tar.xz
97e7023ed6fb307887fd0945ecd6fc9f 5992 science optional libseqlib_1.1.1+dfsg-1.debian.tar.xz
39d953712daebc8fa484fc4063e5961e 163714 libdevel optional libseqlib-dev_1.1.1+dfsg-1_amd64.deb
4d7d5823048601918bcdfea5939312f3 1299832 debug extra libseqlib0-dbgsym_1.1.1+dfsg-1_amd64.deb
91bf965864df9aaf7896a8967f05d6ce 112930 libs optional libseqlib0_1.1.1+dfsg-1_amd64.deb
376a7cb9bdae3bbe72ea14783699616b 6309 science optional libseqlib_1.1.1+dfsg-1_amd64.buildinfo
libseqlib_1.1.1+dfsg-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:libseqlib
Binary:libseqlib0, libseqlib-dev
Architecture:any
Version:1.1.1+dfsg-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Andreas Tille <tille@debian.org>
Homepage:https://github.com/walaj/SeqLib
Standards-Version:3.9.8
Vcs-Browser:https://anonscm.debian.org/cgit/debian-med/libseqlib.git
Vcs-Git:https://anonscm.debian.org/git/debian-med/libseqlib.git
Build-Depends:debhelper (>=10), d-shlibs, pkg-config, libhts-dev (>=1.3.2-3), libcurl4-openssl-dev | libcurl4-dev, zlib1g-dev, libfml-dev (>=0.1-3), libbwa-dev (>=0.7.15-3), libjsoncpp-dev, libssw-dev
Package-List:libseqlib-dev deb libdevel optional arch=any libseqlib0 deb libs optional arch=any
Files:
e40613c3d7dfccc2a8b6828a5348350f 162924 libseqlib_1.1.1+dfsg.orig.tar.xz
97e7023ed6fb307887fd0945ecd6fc9f 5992 libseqlib_1.1.1+dfsg-1.debian.tar.xz
lintian check for libseqlib_1.1.1+dfsg-1.dsc (click to toggle)
README.source for libseqlib_1.1.1+dfsg-1.dsc (click to toggle)
No README.source in this package
control file for libseqlib-dev_1.1.1+dfsg-1_amd64.deb (click to toggle)
Package:libseqlib-dev
Source:libseqlib
Version:1.1.1+dfsg-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:884
Depends:libseqlib0 (=1.1.1+dfsg-1), libhts-dev (>=1.3.2-3), libjsoncpp-dev, libbwa-dev, libfml-dev
Section:libdevel
Priority:optional
Homepage:https://github.com/walaj/SeqLib
Description:
C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)
 C++ API and command line tool that provides a rapid and user-friendly
 interface to BAM/SAM/CRAM files, global sequence alignment operations
 and sequence assembly. Four C libraries perform core operations in
 SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
 and Fermi for error correction and sequence assembly. Benchmarking
 indicates that SeqLib has lower CPU and memory requirements than leading
 C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
 and assemble reads from a CRAM file and then align with BWA-MEM.
 SeqLib also provides additional capabilities, including chromosome-aware
 interval queries and read plotting. Command line tools are available for
 performing integrated error correction, micro-assemblies and alignment.
 .
 This package contains the header files and static library.
lintian check for libseqlib-dev_1.1.1+dfsg-1_amd64.deb (click to toggle)
contents of libseqlib-dev_1.1.1+dfsg-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2017-02-10 09:16 ./
drwxr-xr-x root/root         0 2017-02-10 09:16 ./usr/
drwxr-xr-x root/root         0 2017-02-10 09:16 ./usr/include/
drwxr-xr-x root/root         0 2017-02-10 09:16 ./usr/include/SeqLib/
-rw-r--r-- root/root      4449 2017-02-10 09:16 ./usr/include/SeqLib/BFC.h
-rw-r--r-- root/root      6285 2016-11-25 19:53 ./usr/include/SeqLib/BWAWrapper.h
-rw-r--r-- root/root      3605 2017-02-10 09:16 ./usr/include/SeqLib/BamHeader.h
-rw-r--r-- root/root      8435 2016-11-25 19:53 ./usr/include/SeqLib/BamReader.h
-rw-r--r-- root/root     30359 2017-02-10 09:16 ./usr/include/SeqLib/BamRecord.h
-rw-r--r-- root/root      2058 2016-11-25 19:53 ./usr/include/SeqLib/BamWalker.h
-rw-r--r-- root/root      3096 2016-11-25 19:53 ./usr/include/SeqLib/BamWriter.h
-rw-r--r-- root/root      1139 2016-11-25 19:53 ./usr/include/SeqLib/FastqReader.h
-rw-r--r-- root/root      4022 2017-02-10 09:16 ./usr/include/SeqLib/FermiAssembler.h
-rw-r--r-- root/root      6129 2016-11-25 19:53 ./usr/include/SeqLib/GenomicRegion.h
-rw-r--r-- root/root     19701 2016-11-25 19:53 ./usr/include/SeqLib/GenomicRegionCollection.cpp
-rw-r--r-- root/root     11804 2016-11-25 19:53 ./usr/include/SeqLib/GenomicRegionCollection.h
-rw-r--r-- root/root      7320 2016-11-25 19:53 ./usr/include/SeqLib/IntervalTree.h
-rw-r--r-- root/root     17397 2016-11-25 19:53 ./usr/include/SeqLib/ReadFilter.h
-rw-r--r-- root/root      1387 2017-02-10 09:16 ./usr/include/SeqLib/RefGenome.h
-rw-r--r-- root/root      3832 2016-11-25 19:53 ./usr/include/SeqLib/SeqLibCommon.h
-rw-r--r-- root/root      4170 2016-11-25 19:53 ./usr/include/SeqLib/SeqLibUtils.h
-rw-r--r-- root/root      2455 2016-11-25 19:53 ./usr/include/SeqLib/SeqPlot.h
-rw-r--r-- root/root      1925 2016-11-25 19:53 ./usr/include/SeqLib/UnalignedSequence.h
-rw-r--r-- root/root     17078 2016-11-25 19:53 ./usr/include/SeqLib/aho_corasick.hpp
drwxr-xr-x root/root         0 2017-02-10 09:16 ./usr/lib/
drwxr-xr-x root/root         0 2017-02-10 09:16 ./usr/lib/x86_64-linux-gnu/
-rw-r--r-- root/root    720662 2017-02-10 09:16 ./usr/lib/x86_64-linux-gnu/libseqlib.a
drwxr-xr-x root/root         0 2017-02-10 09:16 ./usr/lib/x86_64-linux-gnu/pkgconfig/
-rw-r--r-- root/root       276 2017-02-10 09:16 ./usr/lib/x86_64-linux-gnu/pkgconfig/libseqlib.pc
drwxr-xr-x root/root         0 2017-02-10 09:16 ./usr/share/
drwxr-xr-x root/root         0 2017-02-10 09:16 ./usr/share/doc/
drwxr-xr-x root/root         0 2017-02-10 09:16 ./usr/share/doc/libseqlib-dev/
-rw-r--r-- root/root       162 2017-02-10 09:16 ./usr/share/doc/libseqlib-dev/changelog.Debian.gz
-rw-r--r-- root/root      1164 2017-02-10 09:16 ./usr/share/doc/libseqlib-dev/copyright
lrwxrwxrwx root/root         0 2017-02-10 09:16 ./usr/lib/x86_64-linux-gnu/libseqlib.so -> libseqlib.so.0.0.0
control file for libseqlib0_1.1.1+dfsg-1_amd64.deb (click to toggle)
Package:libseqlib0
Source:libseqlib
Version:1.1.1+dfsg-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:345
Depends:libc6 (>=2.14), libgcc1 (>=1:3.0), libstdc++6 (>=5.2), zlib1g (>=1:1.1.4)
Section:libs
Priority:optional
Homepage:https://github.com/walaj/SeqLib
Description:
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
 C++ API and command line tool that provides a rapid and user-friendly
 interface to BAM/SAM/CRAM files, global sequence alignment operations
 and sequence assembly. Four C libraries perform core operations in
 SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
 and Fermi for error correction and sequence assembly. Benchmarking
 indicates that SeqLib has lower CPU and memory requirements than leading
 C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
 and assemble reads from a CRAM file and then align with BWA-MEM.
 SeqLib also provides additional capabilities, including chromosome-aware
 interval queries and read plotting. Command line tools are available for
 performing integrated error correction, micro-assemblies and alignment.
lintian check for libseqlib0_1.1.1+dfsg-1_amd64.deb (click to toggle)
contents of libseqlib0_1.1.1+dfsg-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2017-02-10 09:16 ./
drwxr-xr-x root/root         0 2017-02-10 09:16 ./usr/
drwxr-xr-x root/root         0 2017-02-10 09:16 ./usr/lib/
drwxr-xr-x root/root         0 2017-02-10 09:16 ./usr/lib/x86_64-linux-gnu/
-rw-r--r-- root/root    337928 2017-02-10 09:16 ./usr/lib/x86_64-linux-gnu/libseqlib.so.0.0.0
drwxr-xr-x root/root         0 2017-02-10 09:16 ./usr/share/
drwxr-xr-x root/root         0 2017-02-10 09:16 ./usr/share/doc/
drwxr-xr-x root/root         0 2017-02-10 09:16 ./usr/share/doc/libseqlib0/
-rw-r--r-- root/root       162 2017-02-10 09:16 ./usr/share/doc/libseqlib0/changelog.Debian.gz
-rw-r--r-- root/root      1164 2017-02-10 09:16 ./usr/share/doc/libseqlib0/copyright
lrwxrwxrwx root/root         0 2017-02-10 09:16 ./usr/lib/x86_64-linux-gnu/libseqlib.so.0 -> libseqlib.so.0.0.0
control file for libseqlib0-dbgsym_1.1.1+dfsg-1_amd64.deb (click to toggle)
Package:libseqlib0-dbgsym
Source:libseqlib
Version:1.1.1+dfsg-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:1343
Depends:libseqlib0 (=1.1.1+dfsg-1)
Section:debug
Priority:extra
Homepage:https://github.com/walaj/SeqLib
Description:
Debug symbols for libseqlib0
Build-Ids:126d52d57b986161eeefc5ad32ac5f70040657ff
lintian check for libseqlib0-dbgsym_1.1.1+dfsg-1_amd64.deb (click to toggle)
contents of libseqlib0-dbgsym_1.1.1+dfsg-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2017-02-10 09:16 ./
drwxr-xr-x root/root         0 2017-02-10 09:16 ./usr/
drwxr-xr-x root/root         0 2017-02-10 09:16 ./usr/lib/
drwxr-xr-x root/root         0 2017-02-10 09:16 ./usr/lib/debug/
drwxr-xr-x root/root         0 2017-02-10 09:16 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2017-02-10 09:16 ./usr/lib/debug/.build-id/12/
-rw-r--r-- root/root   1364688 2017-02-10 09:16 ./usr/lib/debug/.build-id/12/6d52d57b986161eeefc5ad32ac5f70040657ff.debug
drwxr-xr-x root/root         0 2017-02-10 09:16 ./usr/share/
drwxr-xr-x root/root         0 2017-02-10 09:16 ./usr/share/doc/
lrwxrwxrwx root/root         0 2017-02-10 09:16 ./usr/share/doc/libseqlib0-dbgsym -> libseqlib0

Timestamp: 10.02.2017 / 11:01:08 (UTC)