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libfast-perl_1.7+dfsg-1_amd64.changes (click to toggle)
Format:1.8
Date:Thu, 7 Nov 2019 17:41:51 +0100
Source:libfast-perl
Binary:libfast-perl
Architecture:source all
Version:1.7+dfsg-1
Distribution:unstable
Urgency:low
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Steffen Moeller <moeller@debian.org>
Description:
libfast-perl - FAST Analysis of Sequences Toolbox
Changes:
libfast-perl (1.7+dfsg-1) unstable; urgency=low

  * Initial release.
Files:
3222a5ef391f657188109006baa41271 2026 perl optional libfast-perl_1.7+dfsg-1.dsc
0e254ca762c7003e76a662f13d10f42f 4334032 perl optional libfast-perl_1.7+dfsg.orig.tar.xz
790f98d98e9d0fd6b1d00cd423606e27 2148 perl optional libfast-perl_1.7+dfsg-1.debian.tar.xz
f628e3d3e4f2e6e64d753bf2ad2e041a 884272 perl optional libfast-perl_1.7+dfsg-1_all.deb
c4731c8761a0a10821eaab8eea4c861f 5577 perl optional libfast-perl_1.7+dfsg-1_amd64.buildinfo
libfast-perl_1.7+dfsg-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:libfast-perl
Binary:libfast-perl
Architecture:all
Version:1.7+dfsg-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Steffen Moeller <moeller@debian.org>
Homepage:https://metacpan.org/release/FAST
Standards-Version:4.4.1
Vcs-Browser:https://salsa.debian.org/med-team/libfast-perl
Vcs-Git:https://salsa.debian.org/med-team/libfast-perl.git
Build-Depends:debhelper-compat (=12)
Build-Depends-Indep:perl
Package-List:libfast-perl deb perl optional arch=all
Files:
0e254ca762c7003e76a662f13d10f42f 4334032 libfast-perl_1.7+dfsg.orig.tar.xz
790f98d98e9d0fd6b1d00cd423606e27 2148 libfast-perl_1.7+dfsg-1.debian.tar.xz
lintian 2.29.0~bpo9+1 check for libfast-perl_1.7+dfsg-1.dsc (click to toggle)
README.source for libfast-perl_1.7+dfsg-1.dsc (click to toggle)
No README.source in this package
control file for libfast-perl_1.7+dfsg-1_all.deb (click to toggle)
Package:libfast-perl
Version:1.7+dfsg-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:5327
Depends:perl
Section:perl
Priority:optional
Homepage:https://metacpan.org/release/FAST
Description:
FAST Analysis of Sequences Toolbox
 The FAST Analysis of Sequences Toolbox (FAST) is a set of Unix tools (for
 example fasgrep, fascut, fashead and fastr) for sequence bioinformatics
 modeled after the Unix textutils (such as grep, cut, head, tr, etc). FAST
 workflows are designed for "inline" (serial) processing of flatfile
 biological sequence record databases per-sequence, rather than per-line,
 through Unix command pipelines. The default data exchange format is
 multifasta (specifically, a restriction of BioPerl FastA format). FAST
 tools expose the power of Perl and BioPerl for sequence analysis to
 non-programmers in an easy-to-learn command-line paradigm.
 .
 You do not need to know Perl or BioPerl to use FAST.
lintian 2.29.0~bpo9+1 check for libfast-perl_1.7+dfsg-1_all.deb (click to toggle)
W: libfast-perl: new-package-should-close-itp-bug
W: libfast-perl: manpage-has-bad-whatis-entry usr/share/man/man1/alnpi.1p.gz
W: libfast-perl: incorrect-path-for-interpreter usr/bin/alncut (#!/usr/bin/env perl != /usr/bin/perl)
W: libfast-perl: incorrect-path-for-interpreter usr/bin/alnpi (#!/usr/bin/env perl != /usr/bin/perl)
W: libfast-perl: incorrect-path-for-interpreter usr/bin/fascodon (#!/usr/bin/env perl != /usr/bin/perl)
W: libfast-perl: incorrect-path-for-interpreter usr/bin/fascomp (#!/usr/bin/env perl != /usr/bin/perl)
W: libfast-perl: incorrect-path-for-interpreter usr/bin/fasconvert (#!/usr/bin/env perl != /usr/bin/perl)
W: libfast-perl: incorrect-path-for-interpreter usr/bin/fascut (#!/usr/bin/env perl != /usr/bin/perl)
W: libfast-perl: incorrect-path-for-interpreter usr/bin/fasfilter (#!/usr/bin/env perl != /usr/bin/perl)
W: libfast-perl: incorrect-path-for-interpreter usr/bin/fasgrep (#!/usr/bin/env perl != /usr/bin/perl)
W: libfast-perl: incorrect-path-for-interpreter usr/bin/fashead (#!/usr/bin/env perl != /usr/bin/perl)
W: libfast-perl: incorrect-path-for-interpreter usr/bin/faslen (#!/usr/bin/env perl != /usr/bin/perl)
W: libfast-perl: incorrect-path-for-interpreter usr/bin/faspaste (#!/usr/bin/env perl != /usr/bin/perl)
W: libfast-perl: incorrect-path-for-interpreter usr/bin/fasrc (#!/usr/bin/env perl != /usr/bin/perl)
W: libfast-perl: incorrect-path-for-interpreter usr/bin/fassort (#!/usr/bin/env perl != /usr/bin/perl)
W: libfast-perl: incorrect-path-for-interpreter usr/bin/fassub (#!/usr/bin/env perl != /usr/bin/perl)
W: libfast-perl: incorrect-path-for-interpreter usr/bin/fastail (#!/usr/bin/env perl != /usr/bin/perl)
W: libfast-perl: incorrect-path-for-interpreter usr/bin/fastax (#!/usr/bin/env perl != /usr/bin/perl)
W: libfast-perl: incorrect-path-for-interpreter usr/bin/fastaxsort (#!/usr/bin/env perl != /usr/bin/perl)
W: libfast-perl: incorrect-path-for-interpreter usr/bin/fastr (#!/usr/bin/env perl != /usr/bin/perl)
W: libfast-perl: incorrect-path-for-interpreter usr/bin/fasuniq (#!/usr/bin/env perl != /usr/bin/perl)
W: libfast-perl: incorrect-path-for-interpreter usr/bin/faswc (#!/usr/bin/env perl != /usr/bin/perl)
W: libfast-perl: incorrect-path-for-interpreter usr/bin/fasxl (#!/usr/bin/env perl != /usr/bin/perl)
W: libfast-perl: incorrect-path-for-interpreter usr/bin/gbfalncut (#!/usr/bin/env perl != /usr/bin/perl)
W: libfast-perl: incorrect-path-for-interpreter usr/bin/gbfcut (#!/usr/bin/env perl != /usr/bin/perl)
contents of libfast-perl_1.7+dfsg-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2019-11-07 16:41 ./
drwxr-xr-x root/root         0 2019-11-07 16:41 ./usr/
drwxr-xr-x root/root         0 2019-11-07 16:41 ./usr/bin/
-rwxr-xr-x root/root     11774 2019-11-07 16:41 ./usr/bin/alncut
-rwxr-xr-x root/root     23919 2019-11-07 16:41 ./usr/bin/alnpi
-rwxr-xr-x root/root     18641 2019-11-07 16:41 ./usr/bin/fascodon
-rwxr-xr-x root/root     12249 2019-11-07 16:41 ./usr/bin/fascomp
-rwxr-xr-x root/root      9278 2019-11-07 16:41 ./usr/bin/fasconvert
-rwxr-xr-x root/root     16720 2019-11-07 16:41 ./usr/bin/fascut
-rwxr-xr-x root/root     14421 2019-11-07 16:41 ./usr/bin/fasfilter
-rwxr-xr-x root/root     13811 2019-11-07 16:41 ./usr/bin/fasgrep
-rwxr-xr-x root/root      7140 2019-11-07 16:41 ./usr/bin/fashead
-rwxr-xr-x root/root      6901 2019-11-07 16:41 ./usr/bin/faslen
-rwxr-xr-x root/root     11938 2019-11-07 16:41 ./usr/bin/faspaste
-rwxr-xr-x root/root      5750 2019-11-07 16:41 ./usr/bin/fasrc
-rwxr-xr-x root/root     14664 2019-11-07 16:41 ./usr/bin/fassort
-rwxr-xr-x root/root      8015 2019-11-07 16:41 ./usr/bin/fassub
-rwxr-xr-x root/root      9684 2019-11-07 16:41 ./usr/bin/fastail
-rwxr-xr-x root/root     11821 2019-11-07 16:41 ./usr/bin/fastax
-rwxr-xr-x root/root     13821 2019-11-07 16:41 ./usr/bin/fastaxsort
-rwxr-xr-x root/root     13778 2019-11-07 16:41 ./usr/bin/fastr
-rwxr-xr-x root/root      9561 2019-11-07 16:41 ./usr/bin/fasuniq
-rwxr-xr-x root/root      7587 2019-11-07 16:41 ./usr/bin/faswc
-rwxr-xr-x root/root     13587 2019-11-07 16:41 ./usr/bin/fasxl
-rwxr-xr-x root/root     11736 2019-11-07 16:41 ./usr/bin/gbfalncut
-rwxr-xr-x root/root     11093 2019-11-07 16:41 ./usr/bin/gbfcut
drwxr-xr-x root/root         0 2019-11-07 16:41 ./usr/share/
drwxr-xr-x root/root         0 2019-11-07 16:41 ./usr/share/doc/
drwxr-xr-x root/root         0 2019-11-07 16:41 ./usr/share/doc/libfast-perl/
-rw-r--r-- root/root        76 2017-08-28 19:32 ./usr/share/doc/libfast-perl/TODO.org
-rw-r--r-- root/root       147 2019-11-07 16:41 ./usr/share/doc/libfast-perl/changelog.Debian.gz
-rw-r--r-- root/root       532 2017-08-28 19:32 ./usr/share/doc/libfast-perl/changelog.gz
-rw-r--r-- root/root      2496 2019-11-07 16:41 ./usr/share/doc/libfast-perl/copyright
drwxr-xr-x root/root         0 2019-11-07 16:41 ./usr/share/man/
drwxr-xr-x root/root         0 2019-11-07 16:41 ./usr/share/man/man1/
-rw-r--r-- root/root      3433 2019-11-07 16:41 ./usr/share/man/man1/alncut.1p.gz
-rw-r--r-- root/root      3931 2019-11-07 16:41 ./usr/share/man/man1/alnpi.1p.gz
-rw-r--r-- root/root      3576 2019-11-07 16:41 ./usr/share/man/man1/fascodon.1p.gz
-rw-r--r-- root/root      3163 2019-11-07 16:41 ./usr/share/man/man1/fascomp.1p.gz
-rw-r--r-- root/root      2799 2019-11-07 16:41 ./usr/share/man/man1/fasconvert.1p.gz
-rw-r--r-- root/root      4378 2019-11-07 16:41 ./usr/share/man/man1/fascut.1p.gz
-rw-r--r-- root/root      4451 2019-11-07 16:41 ./usr/share/man/man1/fasfilter.1p.gz
-rw-r--r-- root/root      4336 2019-11-07 16:41 ./usr/share/man/man1/fasgrep.1p.gz
-rw-r--r-- root/root      2662 2019-11-07 16:41 ./usr/share/man/man1/fashead.1p.gz
-rw-r--r-- root/root      2729 2019-11-07 16:41 ./usr/share/man/man1/faslen.1p.gz
-rw-r--r-- root/root      3477 2019-11-07 16:41 ./usr/share/man/man1/faspaste.1p.gz
-rw-r--r-- root/root      2431 2019-11-07 16:41 ./usr/share/man/man1/fasrc.1p.gz
-rw-r--r-- root/root      3868 2019-11-07 16:41 ./usr/share/man/man1/fassort.1p.gz
-rw-r--r-- root/root      3072 2019-11-07 16:41 ./usr/share/man/man1/fassub.1p.gz
-rw-r--r-- root/root      2660 2019-11-07 16:41 ./usr/share/man/man1/fastail.1p.gz
-rw-r--r-- root/root      3443 2019-11-07 16:41 ./usr/share/man/man1/fastax.1p.gz
-rw-r--r-- root/root      3916 2019-11-07 16:41 ./usr/share/man/man1/fastaxsort.1p.gz
-rw-r--r-- root/root      4019 2019-11-07 16:41 ./usr/share/man/man1/fastr.1p.gz
-rw-r--r-- root/root      3161 2019-11-07 16:41 ./usr/share/man/man1/fasuniq.1p.gz
-rw-r--r-- root/root      2607 2019-11-07 16:41 ./usr/share/man/man1/faswc.1p.gz
-rw-r--r-- root/root      3434 2019-11-07 16:41 ./usr/share/man/man1/fasxl.1p.gz
-rw-r--r-- root/root      3226 2019-11-07 16:41 ./usr/share/man/man1/gbfalncut.1p.gz
-rw-r--r-- root/root      3527 2019-11-07 16:41 ./usr/share/man/man1/gbfcut.1p.gz
drwxr-xr-x root/root         0 2019-11-07 16:41 ./usr/share/perl5/
drwxr-xr-x root/root         0 2019-11-07 16:41 ./usr/share/perl5/FAST/
drwxr-xr-x root/root         0 2019-11-07 16:41 ./usr/share/perl5/FAST/Bio/
drwxr-xr-x root/root         0 2019-11-07 16:41 ./usr/share/perl5/FAST/Bio/Align/
-rw-r--r-- root/root     20164 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/Align/AlignI.pm
drwxr-xr-x root/root         0 2019-11-07 16:41 ./usr/share/perl5/FAST/Bio/AlignIO/
drwxr-xr-x root/root         0 2019-11-07 16:41 ./usr/share/perl5/FAST/Bio/AlignIO/Handler/
-rw-r--r-- root/root     24433 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AlignIO/Handler/GenericAlignHandler.pm
-rw-r--r-- root/root      9186 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AlignIO/arp.pm
-rw-r--r-- root/root      5856 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AlignIO/bl2seq.pm
-rw-r--r-- root/root     10551 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AlignIO/clustalw.pm
-rw-r--r-- root/root      6814 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AlignIO/emboss.pm
-rw-r--r-- root/root      6250 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AlignIO/fasta.pm
-rw-r--r-- root/root      5287 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AlignIO/largemultifasta.pm
-rw-r--r-- root/root      4282 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AlignIO/maf.pm
-rw-r--r-- root/root      3353 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AlignIO/mase.pm
-rw-r--r-- root/root      6547 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AlignIO/mega.pm
-rw-r--r-- root/root      6204 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AlignIO/meme.pm
-rw-r--r-- root/root      5777 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AlignIO/metafasta.pm
-rw-r--r-- root/root      6405 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AlignIO/msf.pm
-rw-r--r-- root/root      3817 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AlignIO/nexml.pm
-rw-r--r-- root/root     14319 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AlignIO/nexus.pm
-rw-r--r-- root/root      3756 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AlignIO/pfam.pm
-rw-r--r-- root/root     15920 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AlignIO/phylip.pm
-rw-r--r-- root/root      9045 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AlignIO/po.pm
-rw-r--r-- root/root      8314 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AlignIO/proda.pm
-rw-r--r-- root/root      3140 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AlignIO/prodom.pm
-rw-r--r-- root/root      4135 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AlignIO/psi.pm
-rw-r--r-- root/root      4561 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AlignIO/selex.pm
-rw-r--r-- root/root     27120 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AlignIO/stockholm.pm
-rw-r--r-- root/root      6549 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AlignIO/xmfa.pm
-rw-r--r-- root/root     15521 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AlignIO.pm
-rw-r--r-- root/root      5158 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AnalysisParserI.pm
-rw-r--r-- root/root      6571 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AnalysisResultI.pm
-rw-r--r-- root/root      2927 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AnnotatableI.pm
drwxr-xr-x root/root         0 2019-11-07 16:41 ./usr/share/perl5/FAST/Bio/Annotation/
-rw-r--r-- root/root      7473 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/Annotation/AnnotationFactory.pm
-rw-r--r-- root/root     19044 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/Annotation/Collection.pm
-rw-r--r-- root/root      4671 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/Annotation/Comment.pm
-rw-r--r-- root/root     10722 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/Annotation/DBLink.pm
-rw-r--r-- root/root     14793 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/Annotation/OntologyTerm.pm
-rw-r--r-- root/root     12817 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/Annotation/Reference.pm
-rw-r--r-- root/root      6479 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/Annotation/SimpleValue.pm
-rw-r--r-- root/root     19106 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/Annotation/TagTree.pm
-rw-r--r-- root/root      4560 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/Annotation/Target.pm
-rw-r--r-- root/root      3439 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/Annotation/TypeManager.pm
-rw-r--r-- root/root      6654 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AnnotationCollectionI.pm
-rw-r--r-- root/root      5589 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/AnnotationI.pm
drwxr-xr-x root/root         0 2019-11-07 16:41 ./usr/share/perl5/FAST/Bio/Cluster/
-rw-r--r-- root/root      4309 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/Cluster/FamilyI.pm
-rw-r--r-- root/root     10566 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/Cluster/SequenceFamily.pm
-rw-r--r-- root/root      4214 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/ClusterI.pm
drwxr-xr-x root/root         0 2019-11-07 16:41 ./usr/share/perl5/FAST/Bio/DB/
-rw-r--r-- root/root      6487 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/DB/InMemoryCache.pm
-rw-r--r-- root/root      3130 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/DB/RandomAccessI.pm
-rw-r--r-- root/root      4606 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/DB/SeqI.pm
drwxr-xr-x root/root         0 2019-11-07 16:41 ./usr/share/perl5/FAST/Bio/DB/Taxonomy/
-rw-r--r-- root/root     21185 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/DB/Taxonomy/entrez.pm
-rw-r--r-- root/root     16207 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/DB/Taxonomy/flatfile.pm
-rw-r--r-- root/root     14017 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/DB/Taxonomy/list.pm
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drwxr-xr-x root/root         0 2019-11-07 16:41 ./usr/share/perl5/FAST/Bio/Event/
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drwxr-xr-x root/root         0 2019-11-07 16:41 ./usr/share/perl5/FAST/Bio/Factory/
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-rw-r--r-- root/root      7333 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/FeatureHolderI.pm
-rw-r--r-- root/root      4915 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/GapSeq.pm
-rw-r--r-- root/root      2276 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/GapSeqI.pm
-rw-r--r-- root/root      7560 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/HandlerBaseI.pm
-rw-r--r-- root/root      5189 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/IdentifiableI.pm
-rw-r--r-- root/root     21035 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/LocatableSeq.pm
drwxr-xr-x root/root         0 2019-11-07 16:41 ./usr/share/perl5/FAST/Bio/Location/
-rw-r--r-- root/root     14350 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/Location/Atomic.pm
-rw-r--r-- root/root      3683 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/Location/CoordinatePolicyI.pm
-rw-r--r-- root/root     19540 2017-08-28 19:32 ./usr/share/perl5/FAST/Bio/Location/Fuzzy.pm
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Timestamp: 16.11.2019 / 17:01:24 (UTC)