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libbio-db-hts-perl_3.01-1_amd64.changes (click to toggle)
Format:1.8
Date:Thu, 21 Nov 2019 19:08:04 +0100
Source:libbio-db-hts-perl
Binary:libbio-db-hts-perl
Architecture:source amd64
Version:3.01-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Andreas Tille <tille@debian.org>
Description:
libbio-db-hts-perl - Perl interface to the HTS library
Closes:945241
Changes:
libbio-db-hts-perl (3.01-1) unstable; urgency=medium

  * Initial release (Closes: #945241)
Files:
99352e9dfda8fd2e3ae50e5737701967 2192 science optional libbio-db-hts-perl_3.01-1.dsc
7b7f991deddb12084cf85e0fa3d91819 5250834 science optional libbio-db-hts-perl_3.01.orig.tar.gz
9bc9f8387297a39b74163962b81d6492 3452 science optional libbio-db-hts-perl_3.01-1.debian.tar.xz
a02c0f42b7e63b32e6dd77563a911aa2 153166 debug optional libbio-db-hts-perl-dbgsym_3.01-1_amd64.deb
6f600954f169e52ccbb08cffbd91527c 6967 science optional libbio-db-hts-perl_3.01-1_amd64.buildinfo
60c93801c46f57cb691259bbfaa2f169 158500 science optional libbio-db-hts-perl_3.01-1_amd64.deb
libbio-db-hts-perl_3.01-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:libbio-db-hts-perl
Binary:libbio-db-hts-perl
Architecture:any
Version:3.01-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Andreas Tille <tille@debian.org>
Homepage:https://metacpan.org/release/Bio-DB-HTS
Standards-Version:4.4.1
Vcs-Browser:https://salsa.debian.org/med-team/libbio-db-hts-perl
Vcs-Git:https://salsa.debian.org/med-team/libbio-db-hts-perl.git
Testsuite:autopkgtest-pkg-perl
Build-Depends:debhelper-compat (=12), libbio-perl-perl, libextutils-cbuilder-perl, libextutils-pkgconfig-perl, libhts-dev, libmodule-build-perl, perl
Package-List:libbio-db-hts-perl deb science optional arch=any
Files:
7b7f991deddb12084cf85e0fa3d91819 5250834 libbio-db-hts-perl_3.01.orig.tar.gz
9bc9f8387297a39b74163962b81d6492 3452 libbio-db-hts-perl_3.01-1.debian.tar.xz
lintian 2.36.0~bpo9+1 check for libbio-db-hts-perl_3.01-1.dsc (click to toggle)
README.source for libbio-db-hts-perl_3.01-1.dsc (click to toggle)
No README.source in this package
control file for libbio-db-hts-perl_3.01-1_amd64.deb (click to toggle)
Package:libbio-db-hts-perl
Version:3.01-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:447
Depends:perl (>=5.30.0-9), perlapi-5.30.0, libc6 (>=2.14), libhts2 (>=1.3), zlib1g (>=1:1.2.3.3)
Section:science
Priority:optional
Homepage:https://metacpan.org/release/Bio-DB-HTS
Description:
Perl interface to the HTS library
 HTSlib is an implementation of a unified C library for accessing common file
 formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
 Format), used for high-throughput sequencing data, and is the core library
 used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
 compatible with gcc, g++ and clang.
 .
 HTSlib implements a generalized BAM (binary SAM) index, with file extension
 'csi' (coordinate-sorted index). The HTSlib file reader first looks for the
 new index and then for the old if the new index is absent.
 .
 This package provides a Perl interface to the HTS library.
lintian 2.36.0~bpo9+1 check for libbio-db-hts-perl_3.01-1_amd64.deb (click to toggle)
W: libbio-db-hts-perl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::DB::HTS::FetchIterator.3pm.gz
W: libbio-db-hts-perl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::DB::HTS::ReadIterator.3pm.gz
W: libbio-db-hts-perl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::DB::HTS::Segment.3pm.gz
contents of libbio-db-hts-perl_3.01-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2019-11-21 18:08 ./
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/lib/
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/
-rw-r--r-- root/root     13925 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/AlignWrapper.pm
-rw-r--r-- root/root     17984 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/Alignment.pm
-rw-r--r-- root/root      2756 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/Constants.pm
-rw-r--r-- root/root      2298 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/Faidx.pm
-rw-r--r-- root/root      1068 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/FetchIterator.pm
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/Kseq/
-rw-r--r-- root/root      1244 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/Kseq/Iterator.pod
-rw-r--r-- root/root      1314 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/Kseq/Record.pm
-rw-r--r-- root/root      1799 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/Kseq.pm
-rw-r--r-- root/root      2682 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/Pileup.pm
-rw-r--r-- root/root      2185 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/PileupWrapper.pm
-rw-r--r-- root/root      4999 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/Query.pm
-rw-r--r-- root/root      1296 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/ReadIterator.pm
-rw-r--r-- root/root      3074 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/Segment.pm
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/Tabix/
-rw-r--r-- root/root      2975 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/Tabix/Iterator.pm
-rw-r--r-- root/root      6818 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/Tabix.pm
-rw-r--r-- root/root      1754 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/Target.pm
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/VCF/
-rw-r--r-- root/root       118 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/VCF/Header.pm
-rw-r--r-- root/root       200 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/VCF/HeaderPtr.pm
-rw-r--r-- root/root      2189 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/VCF/Iterator.pm
-rw-r--r-- root/root        99 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/VCF/Row.pm
-rw-r--r-- root/root       191 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/VCF/RowPtr.pm
-rw-r--r-- root/root     13834 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS/VCF.pm
-rw-r--r-- root/root     80204 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/Bio/DB/HTS.pm
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/auto/
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/auto/Bio/
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/auto/Bio/DB/
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/auto/Bio/DB/HTS/
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/auto/Bio/DB/HTS/Faidx/
-rw-r--r-- root/root         0 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/auto/Bio/DB/HTS/Faidx/Faidx.bs
-rw-r--r-- root/root     18432 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/auto/Bio/DB/HTS/Faidx/Faidx.so
-rw-r--r-- root/root         0 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/auto/Bio/DB/HTS/HTS.bs
-rw-r--r-- root/root    141320 2019-11-21 18:08 ./usr/lib/x86_64-linux-gnu/perl5/5.30/auto/Bio/DB/HTS/HTS.so
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/share/
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/share/doc/
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/share/doc/libbio-db-hts-perl/
-rw-r--r-- root/root       163 2019-11-21 18:08 ./usr/share/doc/libbio-db-hts-perl/changelog.Debian.gz
-rw-r--r-- root/root      2009 2019-04-23 13:41 ./usr/share/doc/libbio-db-hts-perl/changelog.gz
-rw-r--r-- root/root       469 2019-11-21 18:08 ./usr/share/doc/libbio-db-hts-perl/copyright
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/share/lintian/
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       189 2019-11-21 18:08 ./usr/share/lintian/overrides/libbio-db-hts-perl
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/share/man/
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/share/man/man3/
-rw-r--r-- root/root     20720 2019-11-21 18:08 ./usr/share/man/man3/Bio::DB::HTS.3pm.gz
-rw-r--r-- root/root      2695 2019-11-21 18:08 ./usr/share/man/man3/Bio::DB::HTS::AlignWrapper.3pm.gz
-rw-r--r-- root/root      7643 2019-11-21 18:08 ./usr/share/man/man3/Bio::DB::HTS::Alignment.3pm.gz
-rw-r--r-- root/root      2578 2019-11-21 18:08 ./usr/share/man/man3/Bio::DB::HTS::Constants.3pm.gz
-rw-r--r-- root/root      2599 2019-11-21 18:08 ./usr/share/man/man3/Bio::DB::HTS::Faidx.3pm.gz
-rw-r--r-- root/root      2193 2019-11-21 18:08 ./usr/share/man/man3/Bio::DB::HTS::FetchIterator.3pm.gz
-rw-r--r-- root/root      2660 2019-11-21 18:08 ./usr/share/man/man3/Bio::DB::HTS::Kseq.3pm.gz
-rw-r--r-- root/root      2506 2019-11-21 18:08 ./usr/share/man/man3/Bio::DB::HTS::Kseq::Iterator.3pm.gz
-rw-r--r-- root/root      2401 2019-11-21 18:08 ./usr/share/man/man3/Bio::DB::HTS::Kseq::Record.3pm.gz
-rw-r--r-- root/root      3069 2019-11-21 18:08 ./usr/share/man/man3/Bio::DB::HTS::Pileup.3pm.gz
-rw-r--r-- root/root      2421 2019-11-21 18:08 ./usr/share/man/man3/Bio::DB::HTS::PileupWrapper.3pm.gz
-rw-r--r-- root/root      3081 2019-11-21 18:08 ./usr/share/man/man3/Bio::DB::HTS::Query.3pm.gz
-rw-r--r-- root/root      2193 2019-11-21 18:08 ./usr/share/man/man3/Bio::DB::HTS::ReadIterator.3pm.gz
-rw-r--r-- root/root      2187 2019-11-21 18:08 ./usr/share/man/man3/Bio::DB::HTS::Segment.3pm.gz
-rw-r--r-- root/root      3190 2019-11-21 18:08 ./usr/share/man/man3/Bio::DB::HTS::Tabix.3pm.gz
-rw-r--r-- root/root      2639 2019-11-21 18:08 ./usr/share/man/man3/Bio::DB::HTS::Tabix::Iterator.3pm.gz
-rw-r--r-- root/root      2361 2019-11-21 18:08 ./usr/share/man/man3/Bio::DB::HTS::Target.3pm.gz
-rw-r--r-- root/root      5879 2019-11-21 18:08 ./usr/share/man/man3/Bio::DB::HTS::VCF.3pm.gz
-rw-r--r-- root/root      2331 2019-11-21 18:08 ./usr/share/man/man3/Bio::DB::HTS::VCF::Iterator.3pm.gz
control file for libbio-db-hts-perl-dbgsym_3.01-1_amd64.deb (click to toggle)
Package:libbio-db-hts-perl-dbgsym
Source:libbio-db-hts-perl
Version:3.01-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:184
Depends:libbio-db-hts-perl (=3.01-1)
Section:debug
Priority:optional
Description:
debug symbols for libbio-db-hts-perl
Auto-Built-Package:debug-symbols
Build-Ids:197e3db7ad050313d31b749a4ae0497258510a45 2348dbed75a1f6e8c15637a41ba394de799d0200
lintian 2.36.0~bpo9+1 check for libbio-db-hts-perl-dbgsym_3.01-1_amd64.deb (click to toggle)
contents of libbio-db-hts-perl-dbgsym_3.01-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2019-11-21 18:08 ./
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/lib/
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/lib/debug/
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/lib/debug/.build-id/19/
-rw-r--r-- root/root     16024 2019-11-21 18:08 ./usr/lib/debug/.build-id/19/7e3db7ad050313d31b749a4ae0497258510a45.debug
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/lib/debug/.build-id/23/
-rw-r--r-- root/root    135960 2019-11-21 18:08 ./usr/lib/debug/.build-id/23/48dbed75a1f6e8c15637a41ba394de799d0200.debug
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/lib/debug/.dwz/x86_64-linux-gnu/
-rw-r--r-- root/root     22320 2019-11-21 18:08 ./usr/lib/debug/.dwz/x86_64-linux-gnu/libbio-db-hts-perl.debug
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/share/
drwxr-xr-x root/root         0 2019-11-21 18:08 ./usr/share/doc/
lrwxrwxrwx root/root         0 2019-11-21 18:08 ./usr/share/doc/libbio-db-hts-perl-dbgsym -> libbio-db-hts-perl

Timestamp: 21.11.2019 / 19:01:30 (UTC)