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insilicoseq_1.4.6-1_amd64.changes (click to toggle)
Format:1.8
Date:Wed, 10 Jun 2020 22:17:57 +0900
Source:insilicoseq
Binary:insilicoseq
Architecture:source all
Version:1.4.6-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Sao I Kuan <saoikuan@gmail.com>
Description:
insilicoseq - sequencing simulator producing realistic Illumina reads
Closes:961331
Changes:
insilicoseq (1.4.6-1) unstable; urgency=medium

  * Initial release (Closes: #961331)
Files:
684c3d7d83e22b41c3d205bca18f233a 2133 science optional insilicoseq_1.4.6-1.dsc
5c9cf9f6e324ec6a8c258881046b55e0 1884931 science optional insilicoseq_1.4.6.orig.tar.gz
46e2169afeb780fef23fe9b120a05c1b 3872 science optional insilicoseq_1.4.6-1.debian.tar.xz
ae14acafe2175e7925dc4d388478f652 1467976 science optional insilicoseq_1.4.6-1_all.deb
42c262320abee92dfcb6b666ddd09f5d 6521 science optional insilicoseq_1.4.6-1_amd64.buildinfo
insilicoseq_1.4.6-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:insilicoseq
Binary:insilicoseq
Architecture:all
Version:1.4.6-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Sao I Kuan <saoikuan@gmail.com>
Homepage:https://github.com/HadrienG/InSilicoSeq
Standards-Version:4.5.0
Vcs-Browser:https://salsa.debian.org/med-team/insilicoseq
Vcs-Git:https://salsa.debian.org/med-team/insilicoseq.git
Testsuite:autopkgtest, autopkgtest-pkg-python
Testsuite-Triggers:python3-nose
Build-Depends:debhelper-compat (=12), dh-python, python3-setuptools, python3-all, python3-biopython, python3-nose
Package-List:insilicoseq deb science optional arch=all
Files:
5c9cf9f6e324ec6a8c258881046b55e0 1884931 insilicoseq_1.4.6.orig.tar.gz
46e2169afeb780fef23fe9b120a05c1b 3872 insilicoseq_1.4.6-1.debian.tar.xz
lintian 2.79.0~bpo10+1 check for insilicoseq_1.4.6-1.dsc (click to toggle)
README.source for insilicoseq_1.4.6-1.dsc (click to toggle)
No README.source in this package
control file for insilicoseq_1.4.6-1_all.deb (click to toggle)
Package:insilicoseq
Version:1.4.6-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:1601
Depends:python3-biopython, python3-future, python3-joblib, python3-numpy, python3-pysam, python3-requests, python3-scipy, python3:any
Section:science
Priority:optional
Homepage:https://github.com/HadrienG/InSilicoSeq
Description:
sequencing simulator producing realistic Illumina reads
 Primarily intended for simulating metagenomic samples, it can also be
 used to produce sequencing data from a single genome.
 .
 InSilicoSeq is written in Python, and use kernel density estimators to
 model the read quality of real sequencing data.
 .
 InSilicoSeq support substitution, insertion and deletion errors. If
 you don't have the use for insertion and deletion error a basic
 error model is provided.
lintian 2.79.0~bpo10+1 check for insilicoseq_1.4.6-1_all.deb (click to toggle)
contents of insilicoseq_1.4.6-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2020-06-10 13:17 ./
drwxr-xr-x root/root         0 2020-06-10 13:17 ./usr/
drwxr-xr-x root/root         0 2020-06-10 13:17 ./usr/bin/
-rwxr-xr-x root/root       386 2020-06-10 13:17 ./usr/bin/iss
drwxr-xr-x root/root         0 2020-06-10 13:17 ./usr/lib/
drwxr-xr-x root/root         0 2020-06-10 13:17 ./usr/lib/python3/
drwxr-xr-x root/root         0 2020-06-10 13:17 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2020-06-10 13:17 ./usr/lib/python3/dist-packages/InSilicoSeq-1.4.6.egg-info/
-rw-r--r-- root/root      6182 2020-06-10 13:17 ./usr/lib/python3/dist-packages/InSilicoSeq-1.4.6.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2020-06-10 13:17 ./usr/lib/python3/dist-packages/InSilicoSeq-1.4.6.egg-info/dependency_links.txt
-rw-r--r-- root/root        38 2020-06-10 13:17 ./usr/lib/python3/dist-packages/InSilicoSeq-1.4.6.egg-info/entry_points.txt
-rw-r--r-- root/root         0 2020-06-10 13:17 ./usr/lib/python3/dist-packages/InSilicoSeq-1.4.6.egg-info/requires.txt
-rw-r--r-- root/root         4 2020-06-10 13:17 ./usr/lib/python3/dist-packages/InSilicoSeq-1.4.6.egg-info/top_level.txt
drwxr-xr-x root/root         0 2020-06-10 13:17 ./usr/lib/python3/dist-packages/iss/
-rw-r--r-- root/root        65 2020-05-12 08:22 ./usr/lib/python3/dist-packages/iss/__init__.py
-rw-r--r-- root/root        79 2020-05-12 08:22 ./usr/lib/python3/dist-packages/iss/__main__.py
-rw-r--r-- root/root      7264 2020-05-12 08:22 ./usr/lib/python3/dist-packages/iss/abundance.py
-rw-r--r-- root/root     20697 2020-06-10 13:17 ./usr/lib/python3/dist-packages/iss/app.py
-rw-r--r-- root/root      9232 2020-05-12 08:22 ./usr/lib/python3/dist-packages/iss/bam.py
-rw-r--r-- root/root      3690 2020-05-12 08:22 ./usr/lib/python3/dist-packages/iss/download.py
drwxr-xr-x root/root         0 2020-06-10 13:17 ./usr/lib/python3/dist-packages/iss/error_models/
-rw-r--r-- root/root      7332 2020-05-12 08:22 ./usr/lib/python3/dist-packages/iss/error_models/__init__.py
-rw-r--r-- root/root      2026 2020-05-12 08:22 ./usr/lib/python3/dist-packages/iss/error_models/basic.py
-rw-r--r-- root/root      3456 2020-05-12 08:22 ./usr/lib/python3/dist-packages/iss/error_models/kde.py
-rw-r--r-- root/root      1596 2020-05-12 08:22 ./usr/lib/python3/dist-packages/iss/error_models/perfect.py
-rw-r--r-- root/root      6862 2020-05-12 08:22 ./usr/lib/python3/dist-packages/iss/generator.py
-rw-r--r-- root/root     13387 2020-05-12 08:22 ./usr/lib/python3/dist-packages/iss/modeller.py
drwxr-xr-x root/root         0 2020-06-10 13:17 ./usr/lib/python3/dist-packages/iss/profiles/
-rw-r--r-- root/root    259870 2020-05-12 08:22 ./usr/lib/python3/dist-packages/iss/profiles/HiSeq
-rw-r--r-- root/root    934227 2020-05-12 08:22 ./usr/lib/python3/dist-packages/iss/profiles/MiSeq
-rw-r--r-- root/root    250101 2020-05-12 08:22 ./usr/lib/python3/dist-packages/iss/profiles/NovaSeq
-rw-r--r-- root/root      7778 2020-05-12 08:22 ./usr/lib/python3/dist-packages/iss/util.py
-rw-r--r-- root/root        22 2020-05-12 08:22 ./usr/lib/python3/dist-packages/iss/version.py
drwxr-xr-x root/root         0 2020-06-10 13:17 ./usr/share/
drwxr-xr-x root/root         0 2020-06-10 13:17 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-06-10 13:17 ./usr/share/doc/insilicoseq/
-rw-r--r-- root/root      1910 2020-05-12 08:22 ./usr/share/doc/insilicoseq/README.md.gz
-rw-r--r-- root/root       278 2020-06-10 13:17 ./usr/share/doc/insilicoseq/README.test
-rw-r--r-- root/root       158 2020-06-10 13:17 ./usr/share/doc/insilicoseq/changelog.Debian.gz
-rw-r--r-- root/root      1431 2020-06-10 13:17 ./usr/share/doc/insilicoseq/copyright
drwxr-xr-x root/root         0 2020-06-10 13:17 ./usr/share/doc/insilicoseq/examples/
drwxr-xr-x root/root         0 2020-05-12 08:22 ./usr/share/doc/insilicoseq/examples/data/
-rw-r--r-- root/root        80 2020-05-12 08:22 ./usr/share/doc/insilicoseq/examples/data/abundance.txt
-rw-r--r-- root/root        77 2020-05-12 08:22 ./usr/share/doc/insilicoseq/examples/data/bad_abundance.txt
-rw-r--r-- root/root       141 2020-05-12 08:22 ./usr/share/doc/insilicoseq/examples/data/draft.fasta
-rw-r--r-- root/root       720 2020-05-12 08:22 ./usr/share/doc/insilicoseq/examples/data/ecoli.bam
-rw-r--r-- root/root        96 2020-05-12 08:22 ./usr/share/doc/insilicoseq/examples/data/ecoli.bam.bai
-rw-r--r-- root/root      1427 2020-05-12 08:22 ./usr/share/doc/insilicoseq/examples/data/ecoli.fasta
-rw-r--r-- root/root     19864 2020-05-12 08:22 ./usr/share/doc/insilicoseq/examples/data/ecoli.npz
-rw-r--r-- root/root       719 2020-05-12 08:22 ./usr/share/doc/insilicoseq/examples/data/ecoli_R1.fastq
-rw-r--r-- root/root       729 2020-05-12 08:22 ./usr/share/doc/insilicoseq/examples/data/ecoli_R2.fastq
-rw-r--r-- root/root         0 2020-05-12 08:22 ./usr/share/doc/insilicoseq/examples/data/empty_file
-rw-r--r-- root/root      3576 2020-05-12 08:22 ./usr/share/doc/insilicoseq/examples/data/genomes.fasta
-rw-r--r-- root/root      2854 2020-05-12 08:22 ./usr/share/doc/insilicoseq/examples/data/read_only.fasta
-rw-r--r-- root/root       673 2020-05-12 08:22 ./usr/share/doc/insilicoseq/examples/data/substitutions_test.bam
-rw-r--r-- root/root        96 2020-05-12 08:22 ./usr/share/doc/insilicoseq/examples/data/substitutions_test.bam.bai
drwxr-xr-x root/root         0 2020-05-12 08:22 ./usr/share/doc/insilicoseq/examples/test/
-rw-r--r-- root/root      3012 2020-05-12 08:22 ./usr/share/doc/insilicoseq/examples/test/test_abundance.py
-rw-r--r-- root/root       435 2020-05-12 08:22 ./usr/share/doc/insilicoseq/examples/test/test_bam.py
-rw-r--r-- root/root       783 2020-05-12 08:22 ./usr/share/doc/insilicoseq/examples/test/test_download.py
-rw-r--r-- root/root      2643 2020-05-12 08:22 ./usr/share/doc/insilicoseq/examples/test/test_error_model.py
-rw-r--r-- root/root      3529 2020-05-12 08:22 ./usr/share/doc/insilicoseq/examples/test/test_generator.py
-rw-r--r-- root/root      2168 2020-05-12 08:22 ./usr/share/doc/insilicoseq/examples/test/test_modeller.py
-rw-r--r-- root/root      4279 2020-05-12 08:22 ./usr/share/doc/insilicoseq/examples/test/test_util.py
-rw-r--r-- root/root       381 2020-06-10 13:17 ./usr/share/doc/insilicoseq/run-unit-test
drwxr-xr-x root/root         0 2020-06-10 13:17 ./usr/share/man/
drwxr-xr-x root/root         0 2020-06-10 13:17 ./usr/share/man/man1/
-rw-r--r-- root/root       434 2020-06-10 13:17 ./usr/share/man/man1/iss.1.gz

Timestamp: 17.06.2020 / 17:01:07 (UTC)