corner image corner image corner image corner image Debian NEW package overview for graphbin
graphbin_1.1-1_amd64.changes (click to toggle)
Format:1.8
Date:Tue, 14 Jul 2020 18:49:48 +0100
Source:graphbin
Binary:graphbin graphbin-examples
Architecture:source all
Version:1.1-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Shayan Doust <hello@shayandoust.me>
Description:
graphbin   - refined binning of metagenomic contigs using assembly graphs
graphbin-examples - refined binning of metagenomic contigs using assembly graphs (exa
Closes:965079
Changes:
graphbin (1.1-1) unstable; urgency=medium

  * Initial release (Closes: #965079)
Files:
fa9a67697ef99deb4ae24df949fe4338 2043 science optional graphbin_1.1-1.dsc
d6817a47e000d1521e3a13863cbf0199 33265662 science optional graphbin_1.1.orig.tar.gz
cb5ea19e07496b6518872e5569175e6f 4296 science optional graphbin_1.1-1.debian.tar.xz
3ee10f02ccbb6244e9bcf8bdb1feae02 29621516 python optional graphbin-examples_1.1-1_all.deb
86d66982f07ed9a12588a6343766cd88 16176 python optional graphbin_1.1-1_all.deb
29d8615c108047bc637612f5802080af 6128 science optional graphbin_1.1-1_amd64.buildinfo
graphbin_1.1-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:graphbin
Binary:graphbin, graphbin-examples
Architecture:all
Version:1.1-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Shayan Doust <hello@shayandoust.me>
Homepage:https://github.com/Vini2/GraphBin
Standards-Version:4.5.0
Vcs-Browser:https://salsa.debian.org/med-team/graphbin
Vcs-Git:https://salsa.debian.org/med-team/graphbin.git
Testsuite:autopkgtest
Build-Depends:debhelper-compat (=13), python3-all, dh-python
Package-List:graphbin deb python optional arch=all graphbin-examples deb python optional arch=all
Files:
d6817a47e000d1521e3a13863cbf0199 33265662 graphbin_1.1.orig.tar.gz
cb5ea19e07496b6518872e5569175e6f 4296 graphbin_1.1-1.debian.tar.xz
lintian 2.79.0~bpo10+1 check for graphbin_1.1-1.dsc (click to toggle)
README.source for graphbin_1.1-1.dsc (click to toggle)
No README.source in this package
control file for graphbin_1.1-1_all.deb (click to toggle)
Package:graphbin
Version:1.1-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:207
Depends:python3:any, python3-biopython, python3-igraph, python3-cairocffi
Section:python
Priority:optional
Multi-Arch:foreign
Homepage:https://github.com/Vini2/GraphBin
Description:
refined binning of metagenomic contigs using assembly graphs
 GraphBin is a NGS data-based metagenomic contig bin refinment tool that
 makes use of the contig connectivity information from the assembly graph
 to bin contigs. It utilizes the binning result of an existing binning
 tool and a label propagation algorithm to correct mis-binned contigs and
 predict the labels of contigs which are discarded due to short length.
lintian 2.79.0~bpo10+1 check for graphbin_1.1-1_all.deb (click to toggle)
contents of graphbin_1.1-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2020-07-14 17:49 ./
drwxr-xr-x root/root         0 2020-07-14 17:49 ./usr/
drwxr-xr-x root/root         0 2020-07-14 17:49 ./usr/bin/
-rwxr-xr-x root/root      7556 2020-07-14 17:49 ./usr/bin/graphbin
drwxr-xr-x root/root         0 2020-07-14 17:49 ./usr/share/
drwxr-xr-x root/root         0 2020-07-14 17:49 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-07-14 17:49 ./usr/share/doc/graphbin/
-rw-r--r-- root/root       317 2020-07-14 17:49 ./usr/share/doc/graphbin/README.test
-rw-r--r-- root/root       156 2020-07-14 17:49 ./usr/share/doc/graphbin/changelog.Debian.gz
-rw-r--r-- root/root      1076 2020-07-14 17:49 ./usr/share/doc/graphbin/copyright
drwxr-xr-x root/root         0 2020-07-14 17:49 ./usr/share/graphbin/
drwxr-xr-x root/root         0 2020-06-06 16:40 ./usr/share/graphbin/bidirectionalmap/
-rw-r--r-- root/root      1096 2020-06-06 16:40 ./usr/share/graphbin/bidirectionalmap/bidirectionalmap.py
-rw-r--r-- root/root     15681 2020-06-06 16:40 ./usr/share/graphbin/graphbin_Canu.py
-rw-r--r-- root/root     15693 2020-06-06 16:40 ./usr/share/graphbin/graphbin_Flye.py
-rw-r--r-- root/root     15745 2020-06-06 16:40 ./usr/share/graphbin/graphbin_MEGAHIT.py
-rw-r--r-- root/root     15647 2020-06-06 16:40 ./usr/share/graphbin/graphbin_Miniasm.py
-rw-r--r-- root/root     15719 2020-06-06 16:40 ./usr/share/graphbin/graphbin_SGA.py
-rw-r--r-- root/root     17890 2020-06-06 16:40 ./usr/share/graphbin/graphbin_SPAdes.py
drwxr-xr-x root/root         0 2020-06-06 16:40 ./usr/share/graphbin/labelpropagation/
-rw-r--r-- root/root      7898 2020-06-06 16:40 ./usr/share/graphbin/labelpropagation/labelprop.py
drwxr-xr-x root/root         0 2020-07-14 17:49 ./usr/share/graphbin/support-scripts/
-rw-r--r-- root/root      2240 2020-06-06 16:40 ./usr/share/graphbin/support-scripts/SupportREADME.md
drwxr-xr-x root/root         0 2020-06-06 16:40 ./usr/share/graphbin/support-scripts/bidirectionalmap/
-rw-r--r-- root/root      1096 2020-06-06 16:40 ./usr/share/graphbin/support-scripts/bidirectionalmap/bidirectionalmap.py
-rw-r--r-- root/root      3800 2020-06-06 16:40 ./usr/share/graphbin/support-scripts/flye_miniasm_gfa2fasta.py
-rw-r--r-- root/root      6998 2020-07-14 17:49 ./usr/share/graphbin/support-scripts/prepResult.py
-rw-r--r-- root/root     12097 2020-06-06 16:40 ./usr/share/graphbin/support-scripts/visualiseResult_Flye_Canu_Miniasm.py
-rw-r--r-- root/root     12299 2020-06-06 16:40 ./usr/share/graphbin/support-scripts/visualiseResult_MEGAHIT.py
-rw-r--r-- root/root     12011 2020-06-06 16:40 ./usr/share/graphbin/support-scripts/visualiseResult_SGA.py
-rw-r--r-- root/root     14204 2020-06-06 16:40 ./usr/share/graphbin/support-scripts/visualiseResult_SPAdes.py
drwxr-xr-x root/root         0 2020-07-14 17:49 ./usr/share/man/
drwxr-xr-x root/root         0 2020-07-14 17:49 ./usr/share/man/man1/
-rw-r--r-- root/root       789 2020-07-14 17:49 ./usr/share/man/man1/graphbin.1.gz
drwxr-xr-x root/root         0 2020-07-14 17:49 ./usr/share/python3/
drwxr-xr-x root/root         0 2020-07-14 17:49 ./usr/share/python3/runtime.d/
-rwxr-xr-x root/root       137 2020-07-14 17:49 ./usr/share/python3/runtime.d/graphbin.rtupdate
control file for graphbin-examples_1.1-1_all.deb (click to toggle)
Package:graphbin-examples
Source:graphbin
Version:1.1-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:29294
Recommends:graphbin
Section:python
Priority:optional
Homepage:https://github.com/Vini2/GraphBin
Description:
refined binning of metagenomic contigs using assembly graphs (examples)
 GraphBin is a NGS data-based metagenomic contig bin refinment tool that
 makes use of the contig connectivity information from the assembly graph
 to bin contigs. It utilizes the binning result of an existing binning
 tool and a label propagation algorithm to correct mis-binned contigs and
 predict the labels of contigs which are discarded due to short length.
 .
 Contains supplementary test data meant to accommodate the graphbin package
lintian 2.79.0~bpo10+1 check for graphbin-examples_1.1-1_all.deb (click to toggle)
contents of graphbin-examples_1.1-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2020-07-14 17:49 ./
drwxr-xr-x root/root         0 2020-07-14 17:49 ./usr/
drwxr-xr-x root/root         0 2020-07-14 17:49 ./usr/share/
drwxr-xr-x root/root         0 2020-07-14 17:49 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-07-14 17:49 ./usr/share/doc/graphbin/
drwxr-xr-x root/root         0 2020-07-14 17:49 ./usr/share/doc/graphbin/examples/
drwxr-xr-x root/root         0 2020-07-14 17:49 ./usr/share/doc/graphbin/examples/ESC_MEGAHIT/
-rw-r--r-- root/root      1544 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ESC_MEGAHIT/busybee_contig_bins.csv.gz
-rw-r--r-- root/root   3834845 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ESC_MEGAHIT/final.gfa.gz
-rw-r--r-- root/root      2270 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ESC_MEGAHIT/maxbin_contig_bins.csv
-rw-r--r-- root/root      1232 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ESC_MEGAHIT/metabat_contig_bins.csv
-rw-r--r-- root/root      7775 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ESC_MEGAHIT/metawatt_contig_bins.csv.gz
-rw-r--r-- root/root   3713665 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ESC_MEGAHIT/my.contigs.fasta.gz
-rw-r--r-- root/root      2270 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ESC_MEGAHIT/solidbin_contig_bins.csv
-rw-r--r-- root/root      5211 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ESC_MEGAHIT/taxaassign_ground_truth_labelling.txt.gz
drwxr-xr-x root/root         0 2020-07-14 17:49 ./usr/share/doc/graphbin/examples/ESC_SGA/
-rw-r--r-- root/root      1869 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ESC_SGA/busybee_contig_bins.csv.gz
-rw-r--r-- root/root   3026217 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ESC_SGA/default-contigs.fa.gz
-rw-r--r-- root/root   3079896 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ESC_SGA/default-graph.asqg.gz
-rw-r--r-- root/root      1006 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ESC_SGA/maxbin_contig_bins.csv.gz
-rw-r--r-- root/root       610 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ESC_SGA/metabat_contig_bins.csv
-rw-r--r-- root/root     13877 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ESC_SGA/metawatt_contig_bins.csv.gz
-rw-r--r-- root/root       917 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ESC_SGA/solidbin_contig_bins.csv.gz
-rw-r--r-- root/root     10977 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ESC_SGA/taxaassign_ground_truth_labelling.txt.gz
drwxr-xr-x root/root         0 2020-07-14 17:49 ./usr/share/doc/graphbin/examples/ESC_metaSPAdes/
-rw-r--r-- root/root   2346367 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ESC_metaSPAdes/assembly_graph_with_scaffolds.gfa.gz
-rw-r--r-- root/root   2476486 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ESC_metaSPAdes/contigs.fasta.gz
-rw-r--r-- root/root     10099 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ESC_metaSPAdes/contigs.paths.gz
-rw-r--r-- root/root       816 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ESC_metaSPAdes/maxbin_contig_bins.csv
-rw-r--r-- root/root       651 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ESC_metaSPAdes/metabat_contig_bins.csv
-rw-r--r-- root/root       763 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ESC_metaSPAdes/metawatt_contig_bins.csv
-rw-r--r-- root/root       849 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ESC_metaSPAdes/solidbin_contig_bins.csv
-rw-r--r-- root/root       932 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ESC_metaSPAdes/taxaassign_ground_truth_labelling.txt
drwxr-xr-x root/root         0 2020-07-14 17:49 ./usr/share/doc/graphbin/examples/ES_MEGAHIT/
-rw-r--r-- root/root      3081 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ES_MEGAHIT/busybee_contig_bins.csv
-rw-r--r-- root/root   2160410 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ES_MEGAHIT/contigs.fasta.gz
-rw-r--r-- root/root   2244043 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ES_MEGAHIT/final.gfa.gz
-rw-r--r-- root/root      1825 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ES_MEGAHIT/maxbin_contig_bins.csv
-rw-r--r-- root/root       999 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ES_MEGAHIT/metabat_contig_bins.csv
-rw-r--r-- root/root     11079 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ES_MEGAHIT/metawatt_contig_bins.csv.gz
-rw-r--r-- root/root      1825 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ES_MEGAHIT/solidbin_contig_bins.csv
-rw-r--r-- root/root      3709 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ES_MEGAHIT/taxaassign_ground_truth_labelling.txt
drwxr-xr-x root/root         0 2020-07-14 17:49 ./usr/share/doc/graphbin/examples/ES_SGA/
-rw-r--r-- root/root       926 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ES_SGA/busybee_contig_bins.csv.gz
-rw-r--r-- root/root   1779076 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ES_SGA/default-contigs.fa.gz
-rw-r--r-- root/root   1804346 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ES_SGA/default-graph.asqg.gz
-rw-r--r-- root/root      3089 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ES_SGA/maxbin_contig_bins.csv
-rw-r--r-- root/root       735 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ES_SGA/metabat_contig_bins.csv
-rw-r--r-- root/root      1117 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ES_SGA/metawatt_contig_bins.csv.gz
-rw-r--r-- root/root      3103 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ES_SGA/solidbin_contig_bins.csv
-rw-r--r-- root/root      3382 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ES_SGA/taxaassign_ground_truth_labelling.txt.gz
drwxr-xr-x root/root         0 2020-07-14 17:49 ./usr/share/doc/graphbin/examples/ES_metaSPAdes/
-rw-r--r-- root/root   1646729 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ES_metaSPAdes/assembly_graph_with_scaffolds.gfa.gz
-rw-r--r-- root/root   1733070 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ES_metaSPAdes/contigs.fasta.gz
-rw-r--r-- root/root      9168 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ES_metaSPAdes/contigs.paths.gz
-rw-r--r-- root/root       596 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ES_metaSPAdes/maxbin_contig_bins.csv
-rw-r--r-- root/root       409 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ES_metaSPAdes/metabat_contig_bins.csv
-rw-r--r-- root/root       585 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ES_metaSPAdes/metawatt_contig_bins.csv
-rw-r--r-- root/root       629 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ES_metaSPAdes/solidbin_contig_bins.csv
-rw-r--r-- root/root       790 2020-06-06 16:40 ./usr/share/doc/graphbin/examples/ES_metaSPAdes/taxaassign_ground_truth_labelling.txt
drwxr-xr-x root/root         0 2020-07-14 17:49 ./usr/share/doc/graphbin-examples/
-rw-r--r-- root/root       156 2020-07-14 17:49 ./usr/share/doc/graphbin-examples/changelog.Debian.gz
-rw-r--r-- root/root      1076 2020-07-14 17:49 ./usr/share/doc/graphbin-examples/copyright
-rw-r--r-- root/root      1576 2020-07-14 17:49 ./usr/share/doc/graphbin-examples/run-unit-test

Timestamp: 16.07.2020 / 22:02:37 (UTC)