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ghmm_0.9~rc3-1_amd64.changes (click to toggle)
Format:1.8
Date:Wed, 23 May 2018 18:36:43 +0200
Source:ghmm
Binary:ghmm libghmm-dev libghmm1
Architecture:source amd64 all
Version:0.9~rc3-1
Distribution:experimental
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Steffen Moeller <moeller@debian.org>
Description:
ghmm       - General Hidden-Markov-Model library - tools
libghmm-dev - General Hidden-Markov-Model library - header files
libghmm1   - General Hidden-Markov-Model library
Closes:899396
Changes:
ghmm (0.9~rc3-1) experimental; urgency=medium

  * Initial release (Closes: #899396)

    - Not ready for main because of missing python3 support
    - legacy "cluster" binary conflicts with graphviz,
      upstream agrees to rename it to ghmm-cluster.
Files:
1b86bfff2602e95e1a07945d9dd7a105 2047 science optional ghmm_0.9~rc3-1.dsc
4e2db5a83bbd5b2a7cc6476657c0c4d7 770526 science optional ghmm_0.9~rc3.orig.tar.gz
4d50885b8ca5f7ce0f6c77c312383474 3264 science optional ghmm_0.9~rc3-1.debian.tar.xz
2634a323209917ad3ee735185a18014e 8856 debug optional ghmm-dbgsym_0.9~rc3-1_amd64.deb
d8319e8b91098d144e3e04b0b34aa677 8349 science optional ghmm_0.9~rc3-1_amd64.buildinfo
e511f22092cbbc45a33363efcca88e04 5852 science optional ghmm_0.9~rc3-1_amd64.deb
b3d942a84ae31e3e105ee19291e3f9f7 29580 science optional libghmm-dev_0.9~rc3-1_all.deb
9075bab0bf17e3fcb972ed6090d3ac84 634380 debug optional libghmm1-dbgsym_0.9~rc3-1_amd64.deb
dd1ad5f117fff3faf97dced177371aaf 274416 science optional libghmm1_0.9~rc3-1_amd64.deb
ghmm_0.9~rc3-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:ghmm
Binary:ghmm, libghmm-dev, libghmm1
Architecture:any all
Version:0.9~rc3-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Steffen Moeller <moeller@debian.org>
Homepage:https://ghmm.org
Standards-Version:4.1.4
Vcs-Browser:https://salsa.debian.org/med-team/ghmm
Vcs-Git:https://salsa.debian.org/med-team/ghmm.git
Build-Depends:debhelper (>=11~), libxml2-dev, libgsl-dev, liblapack-dev, swig
Package-List:ghmm deb science optional arch=any libghmm-dev deb science optional arch=all libghmm1 deb science optional arch=any
Files:
4e2db5a83bbd5b2a7cc6476657c0c4d7 770526 ghmm_0.9~rc3.orig.tar.gz
4d50885b8ca5f7ce0f6c77c312383474 3264 ghmm_0.9~rc3-1.debian.tar.xz
lintian check for ghmm_0.9~rc3-1.dsc (click to toggle)
W: ghmm source: missing-field-in-dep5-copyright license (paragraph at line 5)
W: ghmm source: missing-license-text-in-dep5-copyright GPL-2.0+ (paragraph at line 31)
README.source for ghmm_0.9~rc3-1.dsc (click to toggle)
No README.source in this package
control file for libghmm1_0.9~rc3-1_amd64.deb (click to toggle)
Package:libghmm1
Source:ghmm
Version:0.9~rc3-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:1275
Depends:libc6 (>=2.14), libxml2 (>=2.7.4), python
Section:science
Priority:optional
Homepage:https://ghmm.org
Description:
General Hidden-Markov-Model library
 The library files themselves.
lintian check for libghmm1_0.9~rc3-1_amd64.deb (click to toggle)
contents of libghmm1_0.9~rc3-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2018-05-23 16:36 ./
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/lib/
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/lib/python2.7/
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/lib/python2.7/dist-packages/
-rw-r--r-- root/root       217 2018-05-23 16:36 ./usr/lib/python2.7/dist-packages/HMMEd-0.8-py2.7.egg-info
-rw-r--r-- root/root      6754 2018-05-23 16:36 ./usr/lib/python2.7/dist-packages/HMMEditingContext.py
-rw-r--r-- root/root     23318 2018-05-23 16:36 ./usr/lib/python2.7/dist-packages/HMMEditor.py
-rw-r--r-- root/root     55361 2018-05-23 16:36 ./usr/lib/python2.7/dist-packages/ObjectHMM.py
-rw-r--r-- root/root    495496 2018-05-23 16:36 ./usr/lib/python2.7/dist-packages/_ghmmwrapper.so
-rw-r--r-- root/root      2912 2018-05-23 16:36 ./usr/lib/python2.7/dist-packages/class_change.py
-rw-r--r-- root/root    202980 2018-05-23 16:36 ./usr/lib/python2.7/dist-packages/ghmm.py
-rw-r--r-- root/root     10258 2018-05-23 16:36 ./usr/lib/python2.7/dist-packages/ghmmhelper.py
-rw-r--r-- root/root       248 2018-05-23 16:36 ./usr/lib/python2.7/dist-packages/ghmmwrapper-0.8-py2.7.egg-info
-rw-r--r-- root/root    101718 2018-05-23 16:36 ./usr/lib/python2.7/dist-packages/ghmmwrapper.py
-rw-r--r-- root/root     17741 2018-05-23 16:36 ./usr/lib/python2.7/dist-packages/modhmmer.py
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/lib/x86_64-linux-gnu/
-rw-r--r-- root/root    364632 2018-05-23 16:36 ./usr/lib/x86_64-linux-gnu/libghmm.so.1.0.0
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/share/
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/share/doc/
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/share/doc/libghmm1/
-rw-r--r-- root/root       266 2018-05-23 16:36 ./usr/share/doc/libghmm1/changelog.Debian.gz
-rw-r--r-- root/root      1683 2018-05-23 16:36 ./usr/share/doc/libghmm1/copyright
lrwxrwxrwx root/root         0 2018-05-23 16:36 ./usr/lib/x86_64-linux-gnu/libghmm.so.1 -> libghmm.so.1.0.0
control file for ghmm-dbgsym_0.9~rc3-1_amd64.deb (click to toggle)
Package:ghmm-dbgsym
Source:ghmm
Version:0.9~rc3-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:45
Depends:ghmm (=0.9~rc3-1)
Section:debug
Priority:optional
Description:
debug symbols for ghmm
Build-Ids:5f8ee3e5c8527583d041d6583982b96878411a16 787e05ff51570162314374e0f80a57fdb04a82ca 8b23747ad732673298ae0a0c36f3ce8e64846203 acd8930aa63d43ec839d5a7d2d4e7d624991b39d
lintian check for ghmm-dbgsym_0.9~rc3-1_amd64.deb (click to toggle)
contents of ghmm-dbgsym_0.9~rc3-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2018-05-23 16:36 ./
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/lib/
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/lib/debug/
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/lib/debug/.build-id/5f/
-rw-r--r-- root/root      7520 2018-05-23 16:36 ./usr/lib/debug/.build-id/5f/8ee3e5c8527583d041d6583982b96878411a16.debug
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/lib/debug/.build-id/78/
-rw-r--r-- root/root      7512 2018-05-23 16:36 ./usr/lib/debug/.build-id/78/7e05ff51570162314374e0f80a57fdb04a82ca.debug
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/lib/debug/.build-id/8b/
-rw-r--r-- root/root      7512 2018-05-23 16:36 ./usr/lib/debug/.build-id/8b/23747ad732673298ae0a0c36f3ce8e64846203.debug
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/lib/debug/.build-id/ac/
-rw-r--r-- root/root      7536 2018-05-23 16:36 ./usr/lib/debug/.build-id/ac/d8930aa63d43ec839d5a7d2d4e7d624991b39d.debug
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/share/
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/share/doc/
lrwxrwxrwx root/root         0 2018-05-23 16:36 ./usr/share/doc/ghmm-dbgsym -> ghmm
control file for libghmm-dev_0.9~rc3-1_all.deb (click to toggle)
Package:libghmm-dev
Source:ghmm
Version:0.9~rc3-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:206
Depends:libghmm1 (>=0.9~rc3), libghmm1 (<<0.9~rc3+1)
Section:science
Priority:optional
Homepage:https://ghmm.org
Description:
General Hidden-Markov-Model library - header files
 Header files to compile against the library.
lintian check for libghmm-dev_0.9~rc3-1_all.deb (click to toggle)
contents of libghmm-dev_0.9~rc3-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2018-05-23 16:36 ./
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/include/
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/include/ghmm/
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/include/ghmm/ghmm/
-rw-r--r-- root/root       611 2018-05-23 16:36 ./usr/include/ghmm/ghmm/cfbgibbs.h
-rw-r--r-- root/root      4216 2018-05-23 16:36 ./usr/include/ghmm/ghmm/cluster.h
-rw-r--r-- root/root      3001 2018-05-23 16:36 ./usr/include/ghmm/ghmm/discrime.h
-rw-r--r-- root/root       607 2018-05-23 16:36 ./usr/include/ghmm/ghmm/fbgibbs.h
-rw-r--r-- root/root      5858 2018-05-23 16:36 ./usr/include/ghmm/ghmm/foba.h
-rw-r--r-- root/root      6127 2018-05-23 16:36 ./usr/include/ghmm/ghmm/ghmm.h
-rw-r--r-- root/root      2184 2018-05-23 16:36 ./usr/include/ghmm/ghmm/ghmmconfig.h
-rw-r--r-- root/root      2482 2018-05-23 16:36 ./usr/include/ghmm/ghmm/gradescent.h
-rw-r--r-- root/root      2503 2018-05-23 16:36 ./usr/include/ghmm/ghmm/kbest.h
-rw-r--r-- root/root     22431 2018-05-23 16:36 ./usr/include/ghmm/ghmm/model.h
-rw-r--r-- root/root     13596 2018-05-23 16:36 ./usr/include/ghmm/ghmm/obsolete.h
-rw-r--r-- root/root      8090 2018-05-23 16:36 ./usr/include/ghmm/ghmm/pmodel.h
-rw-r--r-- root/root      1290 2018-05-23 16:36 ./usr/include/ghmm/ghmm/psequence.h
-rw-r--r-- root/root      2956 2018-05-23 16:36 ./usr/include/ghmm/ghmm/pviterbi.h
-rw-r--r-- root/root      2333 2018-05-23 16:36 ./usr/include/ghmm/ghmm/pviterbi_propagate.h
-rw-r--r-- root/root      4528 2018-05-23 16:36 ./usr/include/ghmm/ghmm/reestimate.h
-rw-r--r-- root/root      3435 2018-05-23 16:36 ./usr/include/ghmm/ghmm/rng.h
-rw-r--r-- root/root      5489 2018-05-23 16:36 ./usr/include/ghmm/ghmm/scanner.h
-rw-r--r-- root/root      6564 2018-05-23 16:36 ./usr/include/ghmm/ghmm/scluster.h
-rw-r--r-- root/root      2194 2018-05-23 16:36 ./usr/include/ghmm/ghmm/sdfoba.h
-rw-r--r-- root/root     12829 2018-05-23 16:36 ./usr/include/ghmm/ghmm/sdmodel.h
-rw-r--r-- root/root     15323 2018-05-23 16:36 ./usr/include/ghmm/ghmm/sequence.h
-rw-r--r-- root/root      4510 2018-05-23 16:36 ./usr/include/ghmm/ghmm/sfoba.h
-rw-r--r-- root/root      4099 2018-05-23 16:36 ./usr/include/ghmm/ghmm/sgenerate.h
-rw-r--r-- root/root      3428 2018-05-23 16:36 ./usr/include/ghmm/ghmm/smap_classify.h
-rw-r--r-- root/root      3082 2018-05-23 16:36 ./usr/include/ghmm/ghmm/smixturehmm.h
-rw-r--r-- root/root     19007 2018-05-23 16:36 ./usr/include/ghmm/ghmm/smodel.h
-rw-r--r-- root/root      3305 2018-05-23 16:36 ./usr/include/ghmm/ghmm/sreestimate.h
-rw-r--r-- root/root      2608 2018-05-23 16:36 ./usr/include/ghmm/ghmm/sviterbi.h
-rw-r--r-- root/root      4747 2018-05-23 16:36 ./usr/include/ghmm/ghmm/unsupported.h
-rw-r--r-- root/root      3165 2018-05-23 16:36 ./usr/include/ghmm/ghmm/viterbi.h
-rw-r--r-- root/root      2289 2018-05-23 16:36 ./usr/include/ghmm/ghmm/xmlreader.h
-rw-r--r-- root/root      1974 2018-05-23 16:36 ./usr/include/ghmm/ghmm/xmlwriter.h
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/share/
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/share/doc/
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/share/doc/libghmm-dev/
-rw-r--r-- root/root       266 2018-05-23 16:36 ./usr/share/doc/libghmm-dev/changelog.Debian.gz
-rw-r--r-- root/root      1683 2018-05-23 16:36 ./usr/share/doc/libghmm-dev/copyright
control file for libghmm1-dbgsym_0.9~rc3-1_amd64.deb (click to toggle)
Package:libghmm1-dbgsym
Source:ghmm
Version:0.9~rc3-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:709
Depends:libghmm1 (=0.9~rc3-1)
Section:debug
Priority:optional
Description:
debug symbols for libghmm1
Build-Ids:6511489d7acb36e0d3105220ec4bdbdb96a3491c 8519b33b021754b9542ac5e4a852b4766aabe228
lintian check for libghmm1-dbgsym_0.9~rc3-1_amd64.deb (click to toggle)
contents of libghmm1-dbgsym_0.9~rc3-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2018-05-23 16:36 ./
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/lib/
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/lib/debug/
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/lib/debug/.build-id/65/
-rw-r--r-- root/root    300648 2018-05-23 16:36 ./usr/lib/debug/.build-id/65/11489d7acb36e0d3105220ec4bdbdb96a3491c.debug
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/lib/debug/.build-id/85/
-rw-r--r-- root/root    412824 2018-05-23 16:36 ./usr/lib/debug/.build-id/85/19b33b021754b9542ac5e4a852b4766aabe228.debug
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/share/
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/share/doc/
lrwxrwxrwx root/root         0 2018-05-23 16:36 ./usr/share/doc/libghmm1-dbgsym -> libghmm1
control file for ghmm_0.9~rc3-1_amd64.deb (click to toggle)
Package:ghmm
Version:0.9~rc3-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:43
Depends:libc6 (>=2.2.5), python, libghmm1
Section:science
Priority:optional
Homepage:https://ghmm.org
Description:
General Hidden-Markov-Model library - tools
 The General Hidden Markov Model Library (GHMM) is a C library with
 additional Python bindings implementing a wide range of types of
 Hidden Markov Models and algorithms: discrete, continuous emissions,
 basic training, HMM clustering, HMM mixtures.
lintian check for ghmm_0.9~rc3-1_amd64.deb (click to toggle)
W: ghmm: binary-without-manpage usr/bin/HMMEd
W: ghmm: binary-without-manpage usr/bin/ghmm-cluster
W: ghmm: binary-without-manpage usr/bin/ghmm-config
W: ghmm: binary-without-manpage usr/bin/probdist
W: ghmm: binary-without-manpage usr/bin/scluster
W: ghmm: binary-without-manpage usr/bin/smix_hmm
contents of ghmm_0.9~rc3-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2018-05-23 16:36 ./
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/bin/
-rwxr-xr-x root/root      1887 2018-05-23 16:36 ./usr/bin/HMMEd
-rwxr-xr-x root/root      6248 2018-05-23 16:36 ./usr/bin/ghmm-cluster
-rwxr-xr-x root/root      2735 2018-05-23 16:36 ./usr/bin/ghmm-config
-rwxr-xr-x root/root      6248 2018-05-23 16:36 ./usr/bin/probdist
-rwxr-xr-x root/root      6248 2018-05-23 16:36 ./usr/bin/scluster
-rwxr-xr-x root/root      6248 2018-05-23 16:36 ./usr/bin/smix_hmm
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/share/
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/share/doc/
drwxr-xr-x root/root         0 2018-05-23 16:36 ./usr/share/doc/ghmm/
-rw-r--r-- root/root       266 2018-05-23 16:36 ./usr/share/doc/ghmm/changelog.Debian.gz
-rw-r--r-- root/root      1683 2018-05-23 16:36 ./usr/share/doc/ghmm/copyright

Timestamp: 30.05.2018 / 01:01:21 (UTC)