Debian NEW package overview for genomicsdb
genomicsdb_1.4.3-1_amd64.changes (click to toggle)
Format:1.8
Date:Thu, 28 Jul 2022 17:35:09 +0200
Source:genomicsdb
Binary:genomicsdb-tools genomicsdb-tools-dbgsym libgenomicsdb-dev libgenomicsdb-java libgenomicsdb-jni libgenomicsdb-jni-dbgsym libgenomicsdb0 libgenomicsdb0-dbgsym
Architecture:source amd64 all
Version:1.4.3-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Pierre Gruet <pgt@debian.org>
Description:
genomicsdb-tools - sparse array storage library for genomics (tools)
libgenomicsdb-dev - sparse array storage library for genomics (development files)
libgenomicsdb-java - sparse array storage library for genomics (Java library)
libgenomicsdb-jni - sparse array storage library for genomics (Java native bindings)
libgenomicsdb0 - sparse array storage library for genomics (shared libraries)
Closes:1016046
Changes:
genomicsdb (1.4.3-1) unstable; urgency=medium

  * Initial release (Closes: #1016046)
Files:
9c7005d5d98fcc5ec78f9576c2526074 3378 science optional genomicsdb_1.4.3-1.dsc
89a7133f35d70b5520d583c93b9cbe94 1515241 science optional genomicsdb_1.4.3.orig-genomicsdb-htslib.tar.gz
17bca1fec0ffd8d01ab3cd887ff128d1 1063796 science optional genomicsdb_1.4.3.orig-genomicsdb-tiledb.tar.gz
f294b187df30be2a6640e7846bd1d104 6589775 science optional genomicsdb_1.4.3.orig.tar.gz
98f424b37567bcf17469f82a3f7a100b 25472 science optional genomicsdb_1.4.3-1.debian.tar.xz
0e180f28f54d906aa4381662fd47531b 102219156 debug optional genomicsdb-tools-dbgsym_1.4.3-1_amd64.deb
1fb7630087059de3cfa176f95d3d7f69 1466188 science optional genomicsdb-tools_1.4.3-1_amd64.deb
7d640ca90fb13217467554b08faa087c 20159 science optional genomicsdb_1.4.3-1_amd64.buildinfo
c928218e449d6649c7820d55a76df658 1819348 libdevel optional libgenomicsdb-dev_1.4.3-1_amd64.deb
e7240ec8075b22d1875b97fabc82bb3f 379084 java optional libgenomicsdb-java_1.4.3-1_all.deb
ef45180009d10bb9fd366f8fefcf9855 2341628 debug optional libgenomicsdb-jni-dbgsym_1.4.3-1_amd64.deb
401946ef2c88a66576425391c651ca8f 114572 java optional libgenomicsdb-jni_1.4.3-1_amd64.deb
949d26bb43b365714a91f7575ada3d50 35140568 debug optional libgenomicsdb0-dbgsym_1.4.3-1_amd64.deb
21ed3cf8b873a701c8f7fca6c49a84a5 1460112 libs optional libgenomicsdb0_1.4.3-1_amd64.deb
genomicsdb_1.4.3-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:genomicsdb
Binary:libgenomicsdb-java, libgenomicsdb-jni, genomicsdb-tools, libgenomicsdb0, libgenomicsdb-dev
Architecture:any all
Version:1.4.3-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Pierre Gruet <pgt@debian.org>
Homepage:https://www.genomicsdb.org/
Standards-Version:4.6.1
Vcs-Browser:https://salsa.debian.org/med-team/genomicsdb
Vcs-Git:https://salsa.debian.org/med-team/genomicsdb.git
Testsuite:autopkgtest
Testsuite-Triggers:default-jdk
Build-Depends:debhelper-compat (=13), chrpath, cmake, default-jdk, javahelper, libbuild-helper-maven-plugin-java, libbz2-dev, libcommons-io-java, libcurlpp-dev, libfmt-dev, libgetopt-java, libguava-java, libhtsjdk-java, libjson-simple-java, liblog4j2-java, libmaven-antrun-plugin-java, libmuparserx-dev, libopenmpi-dev, libprotobuf-dev, libprotobuf-java, libprotobuf-java-format-java, libspdlog-dev, libssl-dev, libsurefire-java, libtiledb-dev, liblzma-dev, maven-debian-helper, protobuf-compiler, rapidjson-dev, testng<!nocheck>, uuid-dev
Package-List:genomicsdb-tools deb science optional arch=any libgenomicsdb-dev deb libdevel optional arch=any libgenomicsdb-java deb java optional arch=all libgenomicsdb-jni deb java optional arch=any libgenomicsdb0 deb libs optional arch=any
Files:
89a7133f35d70b5520d583c93b9cbe94 1515241 genomicsdb_1.4.3.orig-genomicsdb-htslib.tar.gz
17bca1fec0ffd8d01ab3cd887ff128d1 1063796 genomicsdb_1.4.3.orig-genomicsdb-tiledb.tar.gz
f294b187df30be2a6640e7846bd1d104 6589775 genomicsdb_1.4.3.orig.tar.gz
98f424b37567bcf17469f82a3f7a100b 25472 genomicsdb_1.4.3-1.debian.tar.xz
lintian 2.94.0~bpo10+1 check for genomicsdb_1.4.3-1.dsc (click to toggle)
README.source for genomicsdb_1.4.3-1.dsc (click to toggle)
genomicsdb is based on forks of tiledb and htslib. These forks are very
different from the tiledb and htslib packages that are maintained in Debian.
This is the reason why we provide components by designing a MUT package.

 -- Pierre Gruet <pgt@debian.org>  Tue, 26 Jul 2022 11:21:54 +0200
control file for genomicsdb-tools_1.4.3-1_amd64.deb (click to toggle)
Package:genomicsdb-tools
Source:genomicsdb
Version:1.4.3-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:11157
Depends:libc6 (>=2.32), libfmt8 (>=8.1.1+ds1), libgcc-s1 (>=3.0), libgomp1 (>=4.9), libopenmpi3 (>=4.1.4), libprotobuf23 (>=3.12.4), libstdc++6 (>=11), libuuid1 (>=2.16), libgenomicsdb0 (=1.4.3-1)
Section:science
Priority:optional
Homepage:https://www.genomicsdb.org/
Description:
sparse array storage library for genomics (tools)
 GenomicsDB is built on top of a htslib fork and an internal array storage
 system for importing, querying and transforming variant data. Variant data is
 sparse by nature (sparse relative to the whole genome) and using sparse array
 data stores is a perfect fit for storing such data.
 .
 The GenomicsDB stores variant data in a 2D array where:
  - Each column corresponds to a genomic position (chromosome + position);
  - Each row corresponds to a sample in a VCF (or CallSet in the GA4GH
    terminology);
  - Each cell contains data for a given sample/CallSet at a given position;
    data is stored in the form of cell attributes;
  - Cells are stored in column major order - this makes accessing cells with
    the same column index (i.e. data for a given genomic position over all
    samples) fast.
  - Variant interval/gVCF interval data is stored in a cell at the start of the
    interval. The END is stored as a cell attribute. For variant intervals
    (such as deletions and gVCF REF blocks), an additional cell is stored at
    the END value of the variant interval. When queried for a given genomic
    position, the query library performs an efficient sweep to determine all
    intervals that intersect with the queried position.
 .
 This package contains some tools to be run as executable files.
lintian 2.94.0~bpo10+1 check for genomicsdb-tools_1.4.3-1_amd64.deb (click to toggle)
contents of genomicsdb-tools_1.4.3-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2022-07-28 15:35 ./
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/bin/
-rwxr-xr-x root/root   2261728 2022-07-28 15:35 ./usr/bin/consolidate_genomicsdb_array
-rwxr-xr-x root/root     14664 2022-07-28 15:35 ./usr/bin/create_genomicsdb_workspace
-rwxr-xr-x root/root   2127232 2022-07-28 15:35 ./usr/bin/gt_mpi_gather
-rwxr-xr-x root/root   2348128 2022-07-28 15:35 ./usr/bin/vcf2genomicsdb
-rwxr-xr-x root/root    578592 2022-07-28 15:35 ./usr/bin/vcf2genomicsdb_init
-rwxr-xr-x root/root   2335456 2022-07-28 15:35 ./usr/bin/vcf_histogram
-rwxr-xr-x root/root   1712000 2022-07-28 15:35 ./usr/bin/vcfdiff
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/share/
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/share/doc/genomicsdb-tools/
-rw-r--r-- root/root       158 2022-07-28 15:35 ./usr/share/doc/genomicsdb-tools/changelog.Debian.gz
-rw-r--r-- root/root     22702 2022-07-28 15:32 ./usr/share/doc/genomicsdb-tools/copyright
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/share/man/
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/share/man/man1/
-rw-r--r-- root/root       245 2022-07-28 15:35 ./usr/share/man/man1/consolidate_genomicsdb_array.1.gz
-rw-r--r-- root/root       216 2022-07-28 15:35 ./usr/share/man/man1/create_genomicsdb_workspace.1.gz
-rw-r--r-- root/root      1054 2022-07-28 15:35 ./usr/share/man/man1/gt_mpi_gather.1.gz
-rw-r--r-- root/root       855 2022-07-28 15:35 ./usr/share/man/man1/vcf2genomicsdb.1.gz
-rw-r--r-- root/root      1091 2022-07-28 15:35 ./usr/share/man/man1/vcf2genomicsdb_init.1.gz
-rw-r--r-- root/root       202 2022-07-28 15:35 ./usr/share/man/man1/vcf_histogram.1.gz
-rw-r--r-- root/root       178 2022-07-28 15:35 ./usr/share/man/man1/vcfdiff.1.gz
control file for genomicsdb-tools-dbgsym_1.4.3-1_amd64.deb (click to toggle)
Package:genomicsdb-tools-dbgsym
Source:genomicsdb
Version:1.4.3-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:103498
Depends:genomicsdb-tools (=1.4.3-1)
Section:debug
Priority:optional
Description:
debug symbols for genomicsdb-tools
Build-Ids:460f5bb8f57ddcdb08ce2236a9ca0d5765877389 4a8290d13f5856588f9b37a73c03f3cb093e8b2e 586a7cbe4bebe1b85365737db10486b79a9d7618 9a6cf0080a90109eddad222ef4283c72ae623831 a63e6e022e052aa37490426a446710878759c467 c892e77740f25fd322aba775ea707b15544f2c44 d318e0610147a0b9ce08c2dcdf618723e014afee
lintian 2.94.0~bpo10+1 check for genomicsdb-tools-dbgsym_1.4.3-1_amd64.deb (click to toggle)
contents of genomicsdb-tools-dbgsym_1.4.3-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2022-07-28 15:35 ./
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/lib/
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/lib/debug/
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/lib/debug/.build-id/46/
-rw-r--r-- root/root  20629592 2022-07-28 15:35 ./usr/lib/debug/.build-id/46/0f5bb8f57ddcdb08ce2236a9ca0d5765877389.debug
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/lib/debug/.build-id/4a/
-rw-r--r-- root/root  20212752 2022-07-28 15:35 ./usr/lib/debug/.build-id/4a/8290d13f5856588f9b37a73c03f3cb093e8b2e.debug
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/lib/debug/.build-id/58/
-rw-r--r-- root/root  20412952 2022-07-28 15:35 ./usr/lib/debug/.build-id/58/6a7cbe4bebe1b85365737db10486b79a9d7618.debug
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/lib/debug/.build-id/9a/
-rw-r--r-- root/root     18280 2022-07-28 15:35 ./usr/lib/debug/.build-id/9a/6cf0080a90109eddad222ef4283c72ae623831.debug
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/lib/debug/.build-id/a6/
-rw-r--r-- root/root   3643912 2022-07-28 15:35 ./usr/lib/debug/.build-id/a6/3e6e022e052aa37490426a446710878759c467.debug
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/lib/debug/.build-id/c8/
-rw-r--r-- root/root  17197680 2022-07-28 15:35 ./usr/lib/debug/.build-id/c8/92e77740f25fd322aba775ea707b15544f2c44.debug
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/lib/debug/.build-id/d3/
-rw-r--r-- root/root  12593272 2022-07-28 15:35 ./usr/lib/debug/.build-id/d3/18e0610147a0b9ce08c2dcdf618723e014afee.debug
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/lib/debug/.dwz/x86_64-linux-gnu/
-rw-r--r-- root/root  11250544 2022-07-28 15:35 ./usr/lib/debug/.dwz/x86_64-linux-gnu/genomicsdb-tools.debug
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/share/
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/share/doc/
lrwxrwxrwx root/root         0 2022-07-28 15:35 ./usr/share/doc/genomicsdb-tools-dbgsym -> genomicsdb-tools
control file for libgenomicsdb-dev_1.4.3-1_amd64.deb (click to toggle)
Package:libgenomicsdb-dev
Source:genomicsdb
Version:1.4.3-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:21343
Depends:libgenomicsdb0 (=1.4.3-1)
Section:libdevel
Priority:optional
Homepage:https://www.genomicsdb.org/
Description:
sparse array storage library for genomics (development files)
 GenomicsDB is built on top of a htslib fork and an internal array storage
 system for importing, querying and transforming variant data. Variant data is
 sparse by nature (sparse relative to the whole genome) and using sparse array
 data stores is a perfect fit for storing such data.
 .
 The GenomicsDB stores variant data in a 2D array where:
  - Each column corresponds to a genomic position (chromosome + position);
  - Each row corresponds to a sample in a VCF (or CallSet in the GA4GH
    terminology);
  - Each cell contains data for a given sample/CallSet at a given position;
    data is stored in the form of cell attributes;
  - Cells are stored in column major order - this makes accessing cells with
    the same column index (i.e. data for a given genomic position over all
    samples) fast.
  - Variant interval/gVCF interval data is stored in a cell at the start of the
    interval. The END is stored as a cell attribute. For variant intervals
    (such as deletions and gVCF REF blocks), an additional cell is stored at
    the END value of the variant interval. When queried for a given genomic
    position, the query library performs an efficient sweep to determine all
    intervals that intersect with the queried position.
 .
 This package contains the development files and the static library.
lintian 2.94.0~bpo10+1 check for libgenomicsdb-dev_1.4.3-1_amd64.deb (click to toggle)
contents of libgenomicsdb-dev_1.4.3-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2022-07-28 15:35 ./
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/include/
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/include/genomicsdb/
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/include/genomicsdb/htslib/
-rw-r--r-- root/root     16081 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/bgzf.h
-rw-r--r-- root/root     15930 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/cram.h
-rw-r--r-- root/root     13194 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/faidx.h
-rw-r--r-- root/root     11004 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/hfile.h
-rw-r--r-- root/root     51041 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/hts.h
-rw-r--r-- root/root      3989 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/hts_defs.h
-rw-r--r-- root/root     11485 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/hts_endian.h
-rw-r--r-- root/root      3944 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/hts_log.h
-rw-r--r-- root/root      2509 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/hts_os.h
-rw-r--r-- root/root      5605 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/kbitset.h
-rw-r--r-- root/root      2828 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/kfunc.h
-rw-r--r-- root/root     22899 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/khash.h
-rw-r--r-- root/root      4050 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/khash_str2int.h
-rw-r--r-- root/root      5135 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/klist.h
-rw-r--r-- root/root      2972 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/knetfile.h
-rw-r--r-- root/root      3295 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/kroundup.h
-rw-r--r-- root/root      8830 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/kseq.h
-rw-r--r-- root/root     11480 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/ksort.h
-rw-r--r-- root/root     10837 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/kstring.h
-rw-r--r-- root/root      8881 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/regidx.h
-rw-r--r-- root/root     74997 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/sam.h
-rw-r--r-- root/root     15903 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/synced_bcf_reader.h
-rw-r--r-- root/root      4942 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/tbx.h
-rw-r--r-- root/root     12747 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/thread_pool.h
-rw-r--r-- root/root     66041 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/vcf.h
-rw-r--r-- root/root      1686 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/vcf_sweep.h
-rw-r--r-- root/root      4919 2021-07-11 09:36 ./usr/include/genomicsdb/htslib/vcfutils.h
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/include/genomicsdb/tiledb/
-rw-r--r-- root/root     56273 2021-09-28 18:36 ./usr/include/genomicsdb/tiledb/tiledb.h
-rw-r--r-- root/root      7773 2021-09-28 18:36 ./usr/include/genomicsdb/tiledb/tiledb_constants.h
-rw-r--r-- root/root      7902 2021-09-28 18:36 ./usr/include/genomicsdb/tiledb/tiledb_storage.h
-rw-r--r-- root/root      3053 2021-09-28 18:36 ./usr/include/genomicsdb/tiledb/tiledb_utils.h
-rw-r--r-- root/root     17371 2021-12-18 00:51 ./usr/include/genomicsdb.h
-rw-r--r-- root/root      2126 2021-12-18 00:51 ./usr/include/genomicsdb_exception.h
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/lib/
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/lib/x86_64-linux-gnu/
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/lib/x86_64-linux-gnu/genomicsdb/
-rw-r--r-- root/root   2899216 2022-07-28 15:35 ./usr/lib/x86_64-linux-gnu/genomicsdb/libgenomicsdb-tiledb.a
-rw-r--r-- root/root  18410870 2022-07-28 15:35 ./usr/lib/x86_64-linux-gnu/libgenomicsdb.a
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/share/
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/share/doc/libgenomicsdb-dev/
-rw-r--r-- root/root       158 2022-07-28 15:35 ./usr/share/doc/libgenomicsdb-dev/changelog.Debian.gz
-rw-r--r-- root/root     22702 2022-07-28 15:32 ./usr/share/doc/libgenomicsdb-dev/copyright
lrwxrwxrwx root/root         0 2022-07-28 15:35 ./usr/lib/x86_64-linux-gnu/libgenomicsdb.so -> libgenomicsdb.so.0
control file for libgenomicsdb-java_1.4.3-1_all.deb (click to toggle)
Package:libgenomicsdb-java
Source:genomicsdb
Version:1.4.3-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:453
Depends:libcommons-io-java (>=2.11.0), libgetopt-java, libguava-java, libhtsjdk-java (>=2.23.0), libjson-simple-java, liblog4j2-java (>=2.17.2), libprotobuf-java, libprotobuf-java-format-java (>=1.3), liblog4j1.2-java, libgenomicsdb-jni (>=1.4.3-1), libgenomicsdb-jni (<<1.4.3-1.1~)
Section:java
Priority:optional
Homepage:https://www.genomicsdb.org/
Description:
sparse array storage library for genomics (Java library)
 GenomicsDB is built on top of a htslib fork and an internal array storage
 system for importing, querying and transforming variant data. Variant data is
 sparse by nature (sparse relative to the whole genome) and using sparse array
 data stores is a perfect fit for storing such data.
 .
 The GenomicsDB stores variant data in a 2D array where:
  - Each column corresponds to a genomic position (chromosome + position);
  - Each row corresponds to a sample in a VCF (or CallSet in the GA4GH
    terminology);
  - Each cell contains data for a given sample/CallSet at a given position;
    data is stored in the form of cell attributes;
  - Cells are stored in column major order - this makes accessing cells with
    the same column index (i.e. data for a given genomic position over all
    samples) fast.
  - Variant interval/gVCF interval data is stored in a cell at the start of the
    interval. The END is stored as a cell attribute. For variant intervals
    (such as deletions and gVCF REF blocks), an additional cell is stored at
    the END value of the variant interval. When queried for a given genomic
    position, the query library performs an efficient sweep to determine all
    intervals that intersect with the queried position.
 .
 This package contains the Java library.
lintian 2.94.0~bpo10+1 check for libgenomicsdb-java_1.4.3-1_all.deb (click to toggle)
contents of libgenomicsdb-java_1.4.3-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2022-07-28 15:35 ./
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/share/
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/share/doc/
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lrwxrwxrwx root/root         0 2022-07-28 15:35 ./usr/share/maven-repo/org/genomicsdb/genomicsdb/1.4.3/genomicsdb-1.4.3.jar -> ../../../../../java/genomicsdb.jar
lrwxrwxrwx root/root         0 2022-07-28 15:35 ./usr/share/maven-repo/org/genomicsdb/genomicsdb/debian/genomicsdb-debian.jar -> ../../../../../java/genomicsdb.jar
control file for libgenomicsdb-jni_1.4.3-1_amd64.deb (click to toggle)
Package:libgenomicsdb-jni
Source:genomicsdb
Version:1.4.3-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:459
Depends:libc6 (>=2.32), libfmt8 (>=8.1.1+ds1), libgcc-s1 (>=3.0), libgenomicsdb0 (=1.4.3-1), libopenmpi3 (>=4.1.4), libprotobuf23 (>=3.12.4), libstdc++6 (>=11)
Section:java
Priority:optional
Homepage:https://www.genomicsdb.org/
Description:
sparse array storage library for genomics (Java native bindings)
 GenomicsDB is built on top of a htslib fork and an internal array storage
 system for importing, querying and transforming variant data. Variant data is
 sparse by nature (sparse relative to the whole genome) and using sparse array
 data stores is a perfect fit for storing such data.
 .
 The GenomicsDB stores variant data in a 2D array where:
  - Each column corresponds to a genomic position (chromosome + position);
  - Each row corresponds to a sample in a VCF (or CallSet in the GA4GH
    terminology);
  - Each cell contains data for a given sample/CallSet at a given position;
    data is stored in the form of cell attributes;
  - Cells are stored in column major order - this makes accessing cells with
    the same column index (i.e. data for a given genomic position over all
    samples) fast.
  - Variant interval/gVCF interval data is stored in a cell at the start of the
    interval. The END is stored as a cell attribute. For variant intervals
    (such as deletions and gVCF REF blocks), an additional cell is stored at
    the END value of the variant interval. When queried for a given genomic
    position, the query library performs an efficient sweep to determine all
    intervals that intersect with the queried position.
 .
 This package contains the Java native bindings.
lintian 2.94.0~bpo10+1 check for libgenomicsdb-jni_1.4.3-1_amd64.deb (click to toggle)
contents of libgenomicsdb-jni_1.4.3-1_amd64.deb (click to toggle)
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-rw-r--r-- root/root     22702 2022-07-28 15:32 ./usr/share/doc/libgenomicsdb-jni/copyright
control file for libgenomicsdb-jni-dbgsym_1.4.3-1_amd64.deb (click to toggle)
Package:libgenomicsdb-jni-dbgsym
Source:genomicsdb
Version:1.4.3-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:2421
Depends:libgenomicsdb-jni (=1.4.3-1)
Section:debug
Priority:optional
Description:
debug symbols for libgenomicsdb-jni
Build-Ids:c94664894289cbe74894e7916893c56743cfcd3d
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lrwxrwxrwx root/root         0 2022-07-28 15:35 ./usr/share/doc/libgenomicsdb-jni-dbgsym -> libgenomicsdb-jni
control file for libgenomicsdb0_1.4.3-1_amd64.deb (click to toggle)
Package:libgenomicsdb0
Source:genomicsdb
Version:1.4.3-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:5270
Depends:libbz2-1.0, libc6 (>=2.33), libcurl4 (>=7.18.0), libfmt8 (>=8.1.1+ds1), libgcc-s1 (>=3.0), libgomp1 (>=4.9), liblzma5 (>=5.1.1alpha+20120614), libmuparserx4.0.8 (>=4.0.8+dfsg), libprotobuf23 (>=3.12.4), libssl3 (>=3.0.0), libstdc++6 (>=11), libuuid1 (>=2.16), zlib1g (>=1:1.1.4), openmpi-bin
Section:libs
Priority:optional
Homepage:https://www.genomicsdb.org/
Description:
sparse array storage library for genomics (shared libraries)
 GenomicsDB is built on top of a htslib fork and an internal array storage
 system for importing, querying and transforming variant data. Variant data is
 sparse by nature (sparse relative to the whole genome) and using sparse array
 data stores is a perfect fit for storing such data.
 .
 The GenomicsDB stores variant data in a 2D array where:
  - Each column corresponds to a genomic position (chromosome + position);
  - Each row corresponds to a sample in a VCF (or CallSet in the GA4GH
    terminology);
  - Each cell contains data for a given sample/CallSet at a given position;
    data is stored in the form of cell attributes;
  - Cells are stored in column major order - this makes accessing cells with
    the same column index (i.e. data for a given genomic position over all
    samples) fast.
  - Variant interval/gVCF interval data is stored in a cell at the start of the
    interval. The END is stored as a cell attribute. For variant intervals
    (such as deletions and gVCF REF blocks), an additional cell is stored at
    the END value of the variant interval. When queried for a given genomic
    position, the query library performs an efficient sweep to determine all
    intervals that intersect with the queried position.
 .
 This package contains the shared library.
lintian 2.94.0~bpo10+1 check for libgenomicsdb0_1.4.3-1_amd64.deb (click to toggle)
contents of libgenomicsdb0_1.4.3-1_amd64.deb (click to toggle)
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drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/
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-rw-r--r-- root/root     22702 2022-07-28 15:32 ./usr/share/doc/libgenomicsdb0/copyright
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/share/lintian/
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       131 2022-07-26 09:59 ./usr/share/lintian/overrides/libgenomicsdb0
lrwxrwxrwx root/root         0 2022-07-28 15:35 ./usr/lib/x86_64-linux-gnu/libgenomicsdb.so.0 -> libgenomicsdb.so.1.4.3
control file for libgenomicsdb0-dbgsym_1.4.3-1_amd64.deb (click to toggle)
Package:libgenomicsdb0-dbgsym
Source:genomicsdb
Version:1.4.3-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:35509
Depends:libgenomicsdb0 (=1.4.3-1)
Section:debug
Priority:optional
Description:
debug symbols for libgenomicsdb0
Build-Ids:357f34d4f82268e1906f695637fd77f9e2069377 5dd7ae141b0b61c660e509f18b72afe2610d60da f966bf7d723374069690932ebff28aa29320b6fa
lintian 2.94.0~bpo10+1 check for libgenomicsdb0-dbgsym_1.4.3-1_amd64.deb (click to toggle)
contents of libgenomicsdb0-dbgsym_1.4.3-1_amd64.deb (click to toggle)
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drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/
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drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/lib/debug/
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-rw-r--r-- root/root     75960 2022-07-28 15:35 ./usr/lib/debug/.dwz/x86_64-linux-gnu/libgenomicsdb0.debug
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/share/
drwxr-xr-x root/root         0 2022-07-28 15:35 ./usr/share/doc/
lrwxrwxrwx root/root         0 2022-07-28 15:35 ./usr/share/doc/libgenomicsdb0-dbgsym -> libgenomicsdb0

Timestamp: 28.07.2022 / 20:05:42 (UTC)