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gasic_0.0.r19-6_amd64.changes (click to toggle)
Format:1.8
Date:Sun, 10 May 2020 02:52:45 +0530
Source:gasic
Binary:gasic gasic-examples
Architecture:source all
Version:0.0.r19-6
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Pranav Ballaney <ballaneypranav@gmail.com>
Description:
gasic      - genome abundance similarity correction
gasic-examples - genome abundance similarity correction (example data)
Changes:
gasic (0.0.r19-6) unstable; urgency=medium

  * Team upload

  [ Steffen Moeller ]
  * d/u/metadata: fixed yaml

  [ Pranav Ballaney ]
  * Install examples
  * Add autopkgtests
  * Move examples to another binary: gasic-examples

  [ Andreas Tille ]
  * Standards-Version: 4.5.0 (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Set upstream metadata fields: Repository.
  * Architecture: all
Files:
a2300111bdb51fb35ce4b7d879e1f831 2112 science optional gasic_0.0.r19-6.dsc
4bbffdc4fed7fe3327fbe22df43ed160 7307544 science optional gasic_0.0.r19-6.debian.tar.xz
0c6ee4f44707a631d02e1baeac4be01c 7302296 science optional gasic-examples_0.0.r19-6_all.deb
be70944b74c2404da9ca4e75bd1e812a 20904 science optional gasic_0.0.r19-6_all.deb
2629eeb2b19f23c04830e53395e60f0c 6156 science optional gasic_0.0.r19-6_amd64.buildinfo
control file for gasic-examples_0.0.r19-6_all.deb (click to toggle)
Package:gasic-examples
Source:gasic
Version:0.0.r19-6
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:7151
Enhances:gasic
Section:science
Priority:optional
Homepage:http://sourceforge.net/projects/gasic/
Description:
genome abundance similarity correction (example data)
 One goal of sequencing based metagenomic analysis is the quantitative
 taxonomic assessment of microbial community compositions. However, the
 majority of approaches either quantify at low resolution (e.g. at phylum
 level) or have severe problems discerning highly similar species. Yet,
 accurate quantification on species level is desirable in applications
 such as metagenomic diagnostics or community comparison. GASiC is a
 method to correct read alignment results for the ambiguities imposed by
 similarities of genomes. It has superior performance over existing
 methods.
 .
 This package includes some examples that can be used for testing gasic.
lintian 2.71.0~bpo10+1 check for gasic-examples_0.0.r19-6_all.deb (click to toggle)
contents of gasic-examples_0.0.r19-6_all.deb (click to toggle)
drwxr-xr-x root/root         0 2020-05-09 21:22 ./
drwxr-xr-x root/root         0 2020-05-09 21:22 ./usr/
drwxr-xr-x root/root         0 2020-05-09 21:22 ./usr/share/
drwxr-xr-x root/root         0 2020-05-09 21:22 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-05-09 21:22 ./usr/share/doc/gasic/
-rw-r--r-- root/root       417 2020-05-09 21:22 ./usr/share/doc/gasic/README.test_data
drwxr-xr-x root/root         0 2020-05-09 21:22 ./usr/share/doc/gasic/examples/
-rw-r--r-- root/root       417 2020-05-09 21:22 ./usr/share/doc/gasic/examples/README.test_data
drwxr-xr-x root/root         0 2020-05-09 21:22 ./usr/share/doc/gasic/examples/genomes/
-rw-r--r-- root/root      3536 2020-05-09 21:22 ./usr/share/doc/gasic/examples/genomes/dwv.fasta-e.gz
-rw-r--r-- root/root        64 2020-05-09 21:22 ./usr/share/doc/gasic/examples/genomes/dwv.fasta.fai.gz
-rw-r--r-- root/root      3519 2020-05-09 21:22 ./usr/share/doc/gasic/examples/genomes/dwv.fasta.gz
-rw-r--r-- root/root        63 2020-05-09 21:22 ./usr/share/doc/gasic/examples/genomes/vdv-1-dwv-5.fasta.fai.gz
-rw-r--r-- root/root        63 2020-05-09 21:22 ./usr/share/doc/gasic/examples/genomes/vdv-1-dwv-9.fasta.fai.gz
-rw-r--r-- root/root        64 2020-05-09 21:22 ./usr/share/doc/gasic/examples/genomes/vdv1.fasta.fai.gz
-rw-r--r-- root/root      3441 2020-05-09 21:22 ./usr/share/doc/gasic/examples/genomes/vdv1.fasta.gz
-rw-r--r-- root/root      3465 2020-05-09 21:22 ./usr/share/doc/gasic/examples/genomes/vdv1dwv5.fasta.gz
-rw-r--r-- root/root      3479 2020-05-09 21:22 ./usr/share/doc/gasic/examples/genomes/vdv1dwv9.fasta.gz
-rw-r--r-- root/root        37 2020-05-09 21:22 ./usr/share/doc/gasic/examples/names.gz
drwxr-xr-x root/root         0 2020-05-09 21:22 ./usr/share/doc/gasic/examples/reads/
-rw-r--r-- root/root   7279302 2020-05-09 21:22 ./usr/share/doc/gasic/examples/reads/SRR059298_subset.fastq.gz
-rw-r--r-- root/root       601 2020-05-09 21:22 ./usr/share/doc/gasic/run-unit-test
drwxr-xr-x root/root         0 2020-05-09 21:22 ./usr/share/doc/gasic-examples/
-rw-r--r-- root/root      1121 2020-05-09 21:22 ./usr/share/doc/gasic-examples/changelog.Debian.gz
-rw-r--r-- root/root      1825 2020-05-09 21:22 ./usr/share/doc/gasic-examples/copyright

Timestamp: 13.05.2020 / 08:10:58 (UTC)