corner image corner image corner image corner image Debian NEW package overview for estscan
estscan_3.0.3-2_amd64.changes (click to toggle)
Format:1.8
Date:Sun, 03 Jun 2018 10:20:28 +0200
Source:estscan
Binary:estscan
Architecture:source amd64
Version:3.0.3-2
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Steffen Moeller <moeller@debian.org>
Description:
estscan    - ORF-independent detector of coding DNA sequences
Closes:900532
Changes:
estscan (3.0.3-2) unstable; urgency=medium

  * Reuploading to main / thanks to Goeran Weinholt for reexamining my
    interpretation of the license (Closes: #900532).
Files:
29fb82eb048f1d51eebd0f1017e4deca 1931 science optional estscan_3.0.3-2.dsc
c07284ad28a38050bab0c1b71bbd055a 46412 science optional estscan_3.0.3.orig.tar.gz
57e6963bf179002c38cc021ca8d4dc15 4016 science optional estscan_3.0.3-2.debian.tar.xz
48eabf0df9d434647db325f790082c88 43460 debug optional estscan-dbgsym_3.0.3-2_amd64.deb
5ba1e029e14aaa1c26373b5a2df8aa5d 6260 science optional estscan_3.0.3-2_amd64.buildinfo
8bb4d226c3080f0f3b77a81b93060a83 44368 science optional estscan_3.0.3-2_amd64.deb
estscan_3.0.3-2.dsc (click to toggle)
Format:3.0 (quilt)
Source:estscan
Binary:estscan
Architecture:any
Version:3.0.3-2
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Steffen Moeller <moeller@debian.org>
Homepage:http://estscan.sourceforge.net/
Standards-Version:4.1.4
Vcs-Browser:https://salsa.debian.org/med-team/estscan
Vcs-Git:https://salsa.debian.org/med-team/estscan.git
Build-Depends:debhelper (>=10), gfortran
Package-List:estscan deb science optional arch=any
Files:
c07284ad28a38050bab0c1b71bbd055a 46412 estscan_3.0.3.orig.tar.gz
57e6963bf179002c38cc021ca8d4dc15 4016 estscan_3.0.3-2.debian.tar.xz
lintian check for estscan_3.0.3-2.dsc (click to toggle)
README.source for estscan_3.0.3-2.dsc (click to toggle)
No README.source in this package
control file for estscan_3.0.3-2_amd64.deb (click to toggle)
Package:estscan
Version:3.0.3-2
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:179
Depends:libc6 (>=2.14), libgcc1 (>=1:3.0), libgfortran4 (>=7), libquadmath0 (>=4.6), perl:any
Section:science
Priority:optional
Homepage:http://estscan.sourceforge.net/
Description:
ORF-independent detector of coding DNA sequences
 ESTScan is a program that can detect coding regions in DNA sequences,
 even if they are of low quality. ESTScan will also detect and correct
 sequencing errors that lead to frameshifts.  ESTScan is not a gene
 prediction program , nor is it an open reading frame detector. In fact,
 its strength lies in the fact that it does not require an open reading
 frame to detect a coding region. As a result, the program may miss a
 few translated amino acids at either the N or the C terminus, but will
 detect coding regions with high selectivity and sensitivity.
 .
 ESTScan takes advantages of the bias in hexanucleotide usage found in
 coding regions relative to non-coding regions. This bias is formalized
 as an inhomogeneous 3-periodic fifth-order Hidden Markov Model
 (HMM). Additionally, the HMM of ESTScan has been extended to allows
 insertions and deletions when these improve the coding region statistics.
lintian check for estscan_3.0.3-2_amd64.deb (click to toggle)
W: estscan: binary-without-manpage usr/bin/estscan
W: estscan: binary-without-manpage usr/bin/evaluate_model
W: estscan: binary-without-manpage usr/bin/extract_EST
W: estscan: binary-without-manpage usr/bin/extract_UG_EST
W: estscan: binary-without-manpage usr/bin/makesmat
W: estscan: binary-without-manpage usr/bin/maskred
W: estscan: binary-without-manpage usr/bin/prepare_data
W: estscan: binary-without-manpage usr/bin/winsegshuffle
contents of estscan_3.0.3-2_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2018-06-03 08:20 ./
drwxr-xr-x root/root         0 2018-06-03 08:20 ./usr/
drwxr-xr-x root/root         0 2018-06-03 08:20 ./usr/bin/
-rwxr-xr-x root/root     31096 2018-06-03 08:20 ./usr/bin/estscan
-rwxr-xr-x root/root     25415 2018-05-31 22:23 ./usr/bin/evaluate_model
-rwxr-xr-x root/root     18837 2018-05-31 22:23 ./usr/bin/extract_EST
-rwxr-xr-x root/root     16564 2018-05-31 22:23 ./usr/bin/extract_UG_EST
-rwxr-xr-x root/root     18680 2018-06-03 08:20 ./usr/bin/makesmat
-rwxr-xr-x root/root     10456 2018-06-03 08:20 ./usr/bin/maskred
-rwxr-xr-x root/root     18182 2018-05-31 22:23 ./usr/bin/prepare_data
-rwxr-xr-x root/root     14560 2018-06-03 08:20 ./usr/bin/winsegshuffle
drwxr-xr-x root/root         0 2018-06-03 08:20 ./usr/share/
drwxr-xr-x root/root         0 2018-06-03 08:20 ./usr/share/doc/
drwxr-xr-x root/root         0 2018-06-03 08:20 ./usr/share/doc/estscan/
-rw-r--r-- root/root       256 2018-06-03 08:20 ./usr/share/doc/estscan/changelog.Debian.gz
-rw-r--r-- root/root      5480 2018-05-31 22:45 ./usr/share/doc/estscan/copyright
drwxr-xr-x root/root         0 2018-06-03 08:20 ./usr/share/perl5/
-rw-r--r-- root/root      8714 2018-05-31 22:23 ./usr/share/perl5/build_model_utils.pl
control file for estscan-dbgsym_3.0.3-2_amd64.deb (click to toggle)
Package:estscan-dbgsym
Source:estscan
Version:3.0.3-2
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:80
Depends:estscan (=3.0.3-2)
Section:debug
Priority:optional
Description:
debug symbols for estscan
Build-Ids:7dfd689a44fc01717737904a9d18b64e004f00dd 9e5d0032db1f48373147d5df63d7b17364a37309 ca8e8e14f7e6b2d9c0d504c33a0a9ea5d4d67948 fa4acc9678c61bfa8728f2d3bd55509d062415fc
lintian check for estscan-dbgsym_3.0.3-2_amd64.deb (click to toggle)
contents of estscan-dbgsym_3.0.3-2_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2018-06-03 08:20 ./
drwxr-xr-x root/root         0 2018-06-03 08:20 ./usr/
drwxr-xr-x root/root         0 2018-06-03 08:20 ./usr/lib/
drwxr-xr-x root/root         0 2018-06-03 08:20 ./usr/lib/debug/
drwxr-xr-x root/root         0 2018-06-03 08:20 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2018-06-03 08:20 ./usr/lib/debug/.build-id/7d/
-rw-r--r-- root/root     10584 2018-06-03 08:20 ./usr/lib/debug/.build-id/7d/fd689a44fc01717737904a9d18b64e004f00dd.debug
drwxr-xr-x root/root         0 2018-06-03 08:20 ./usr/lib/debug/.build-id/9e/
-rw-r--r-- root/root     11992 2018-06-03 08:20 ./usr/lib/debug/.build-id/9e/5d0032db1f48373147d5df63d7b17364a37309.debug
drwxr-xr-x root/root         0 2018-06-03 08:20 ./usr/lib/debug/.build-id/ca/
-rw-r--r-- root/root     28096 2018-06-03 08:20 ./usr/lib/debug/.build-id/ca/8e8e14f7e6b2d9c0d504c33a0a9ea5d4d67948.debug
drwxr-xr-x root/root         0 2018-06-03 08:20 ./usr/lib/debug/.build-id/fa/
-rw-r--r-- root/root     16344 2018-06-03 08:20 ./usr/lib/debug/.build-id/fa/4acc9678c61bfa8728f2d3bd55509d062415fc.debug
drwxr-xr-x root/root         0 2018-06-03 08:20 ./usr/share/
drwxr-xr-x root/root         0 2018-06-03 08:20 ./usr/share/doc/
lrwxrwxrwx root/root         0 2018-06-03 08:20 ./usr/share/doc/estscan-dbgsym -> estscan

Timestamp: 03.06.2018 / 09:01:14 (UTC)