Debian NEW package overview for cutesv
cutesv_1.0.11-1_amd64.changes (click to toggle)
Format:1.8
Date:Sat, 22 May 2021 08:48:12 +0200
Source:cutesv
Binary:cutesv
Architecture:source all
Version:1.0.11-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Andreas Tille <tille@debian.org>
Description:
cutesv     - comprehensive discovery of structural variations of genomic seque
Closes:991277
Changes:
cutesv (1.0.11-1) unstable; urgency=medium

  * Initial release (Closes: #991277)
Files:
4be62739e6e94ea455d8824087dbc973 1978 science optional cutesv_1.0.11-1.dsc
0fd036c55551c99b01488a296819723d 1902303 science optional cutesv_1.0.11.orig.tar.gz
217a6745f21c28ba931ae35d10afb14c 5084 science optional cutesv_1.0.11-1.debian.tar.xz
e2140b18639f5aa8ee33ba15c3c9c5b7 29124 science optional cutesv_1.0.11-1_all.deb
34875d91f2041af7f9084cd09cf904e9 6817 science optional cutesv_1.0.11-1_amd64.buildinfo
cutesv_1.0.11-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:cutesv
Binary:cutesv
Architecture:all
Version:1.0.11-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Andreas Tille <tille@debian.org>, Steffen Moeller <moeller@debian.org>
Homepage:https://github.com/tjiangHIT/cuteSV
Standards-Version:4.6.0
Vcs-Browser:https://salsa.debian.org/med-team/cutesv
Vcs-Git:https://salsa.debian.org/med-team/cutesv.git
Build-Depends:debhelper-compat (=13), dh-python, python3, python3-setuptools
Package-List:cutesv deb science optional arch=all
Files:
0fd036c55551c99b01488a296819723d 1902303 cutesv_1.0.11.orig.tar.gz
217a6745f21c28ba931ae35d10afb14c 5084 cutesv_1.0.11-1.debian.tar.xz
lintian 2.94.0~bpo10+1 check for cutesv_1.0.11-1.dsc (click to toggle)
README.source for cutesv_1.0.11-1.dsc (click to toggle)
The file debian/cuteSV.1 was created by the script debian/createmanpages,
which again depends on help2man.  That dependency was not formally stated
in d/control.

 -- Steffen Moeller <moeller@debian.org>  Mon, 19 Jul 2021 15:50:30 +0200
control file for cutesv_1.0.11-1_all.deb (click to toggle)
Package:cutesv
Version:1.0.11-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:153
Depends:python3-biopython, python3-cigar, python3-numpy, python3-pysam, python3-vcf, python3:any
Section:science
Priority:optional
Homepage:https://github.com/tjiangHIT/cuteSV
Description:
comprehensive discovery of structural variations of genomic sequences
 Long-read sequencing enables the comprehensive discovery of structural
 variations (SVs). However, it is still non-trivial to achieve high
 sensitivity and performance simultaneously due to the complex SV
 characteristics implied by noisy long reads.
 .
 cuteSV is a sensitive, fast and scalable long-read-based SV detection
 approach. cuteSV uses tailored methods to collect the signatures of
 various types of SVs and employs a clustering-and-refinement method to
 analyze the signatures to implement sensitive SV detection. Benchmarks
 on real Pacific Biosciences (PacBio) and Oxford Nanopore Technology
 (ONT) datasets demonstrate that cuteSV has better yields and scalability
 than state-of-the-art tools.
lintian 2.94.0~bpo10+1 check for cutesv_1.0.11-1_all.deb (click to toggle)
contents of cutesv_1.0.11-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2021-05-22 06:48 ./
drwxr-xr-x root/root         0 2021-05-22 06:48 ./usr/
drwxr-xr-x root/root         0 2021-05-22 06:48 ./usr/bin/
-rwxr-xr-x root/root     25297 2021-05-22 06:48 ./usr/bin/cuteSV
drwxr-xr-x root/root         0 2021-05-22 06:48 ./usr/lib/
drwxr-xr-x root/root         0 2021-05-22 06:48 ./usr/lib/python3/
drwxr-xr-x root/root         0 2021-05-22 06:48 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2021-05-22 06:48 ./usr/lib/python3/dist-packages/cuteSV/
-rw-r--r-- root/root      5159 2021-05-22 06:48 ./usr/lib/python3/dist-packages/cuteSV/CommandRunner.py
-rw-r--r-- root/root         0 2021-05-22 06:48 ./usr/lib/python3/dist-packages/cuteSV/__init__.py
-rw-r--r-- root/root     11361 2021-05-22 06:48 ./usr/lib/python3/dist-packages/cuteSV/cuteSV_Description.py
-rw-r--r-- root/root     21514 2021-05-22 06:48 ./usr/lib/python3/dist-packages/cuteSV/cuteSV_forcecalling.py
-rw-r--r-- root/root     12732 2021-05-22 06:48 ./usr/lib/python3/dist-packages/cuteSV/cuteSV_genotype.py
-rw-r--r-- root/root      4769 2021-05-22 06:48 ./usr/lib/python3/dist-packages/cuteSV/cuteSV_resolveDUP.py
-rw-r--r-- root/root     11965 2021-05-22 06:48 ./usr/lib/python3/dist-packages/cuteSV/cuteSV_resolveINDEL.py
-rw-r--r-- root/root      7724 2021-05-22 06:48 ./usr/lib/python3/dist-packages/cuteSV/cuteSV_resolveINV.py
-rw-r--r-- root/root      8402 2021-05-22 06:48 ./usr/lib/python3/dist-packages/cuteSV/cuteSV_resolveTRA.py
-rw-r--r-- root/root      3043 2021-05-22 06:48 ./usr/lib/python3/dist-packages/cuteSV/diploid_calling.py
drwxr-xr-x root/root         0 2021-05-22 06:48 ./usr/lib/python3/dist-packages/cuteSV-1.0.11.egg-info/
-rw-r--r-- root/root     13779 2021-05-22 06:48 ./usr/lib/python3/dist-packages/cuteSV-1.0.11.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2021-05-22 06:48 ./usr/lib/python3/dist-packages/cuteSV-1.0.11.egg-info/dependency_links.txt
-rw-r--r-- root/root         1 2021-05-22 06:48 ./usr/lib/python3/dist-packages/cuteSV-1.0.11.egg-info/not-zip-safe
-rw-r--r-- root/root         0 2021-05-22 06:48 ./usr/lib/python3/dist-packages/cuteSV-1.0.11.egg-info/requires.txt
-rw-r--r-- root/root        18 2021-05-22 06:48 ./usr/lib/python3/dist-packages/cuteSV-1.0.11.egg-info/top_level.txt
drwxr-xr-x root/root         0 2021-05-22 06:48 ./usr/share/
drwxr-xr-x root/root         0 2021-05-22 06:48 ./usr/share/doc/
drwxr-xr-x root/root         0 2021-05-22 06:48 ./usr/share/doc/cutesv/
-rw-r--r-- root/root       156 2021-05-22 06:48 ./usr/share/doc/cutesv/changelog.Debian.gz
-rw-r--r-- root/root      1333 2021-05-22 06:48 ./usr/share/doc/cutesv/copyright
drwxr-xr-x root/root         0 2021-05-22 06:48 ./usr/share/man/
drwxr-xr-x root/root         0 2021-05-22 06:48 ./usr/share/man/man1/
-rw-r--r-- root/root      1959 2021-05-22 06:48 ./usr/share/man/man1/cuteSV.1.gz

Timestamp: 27.09.2021 / 23:01:01 (UTC)