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covtobed_1.1.2+dfsg-1_amd64.changes (click to toggle)
Format:1.8
Date:Sat, 30 May 2020 18:45:28 +0100
Source:covtobed
Binary:covtobed covtobed-dbgsym covtobed-examples
Architecture:source amd64 all
Version:1.1.2+dfsg-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Shayan Doust <hello@shayandoust.me>
Description:
covtobed   - convert the coverage track from a BAM file into a BED file
covtobed-examples - example data and scripts for mindthegap
Closes:962057
Changes:
covtobed (1.1.2+dfsg-1) unstable; urgency=medium

  * Initial release (Closes: #962057)
Files:
5a75b459f5f892d9a1b21cee9b638303 2105 science optional covtobed_1.1.2+dfsg-1.dsc
ddde825fa9224c9470ce6e9547b6e532 35266408 science optional covtobed_1.1.2+dfsg.orig.tar.xz
0d1d258496455971941e2e67ae2e0ac8 5188 science optional covtobed_1.1.2+dfsg-1.debian.tar.xz
bbe54480af7d285d958cada7fb53b5f0 715252 debug optional covtobed-dbgsym_1.1.2+dfsg-1_amd64.deb
f33d8a186be76a595612d65a1ba6726a 34312304 science optional covtobed-examples_1.1.2+dfsg-1_all.deb
7f278338122ad83778c48372b13934d2 6035 science optional covtobed_1.1.2+dfsg-1_amd64.buildinfo
335009c6cbc3c1576ceb9a36c7778006 43972 science optional covtobed_1.1.2+dfsg-1_amd64.deb
covtobed_1.1.2+dfsg-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:covtobed
Binary:covtobed, covtobed-examples
Architecture:any all
Version:1.1.2+dfsg-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Shayan Doust <hello@shayandoust.me>
Homepage:https://github.com/telatin/covtobed
Standards-Version:4.5.0
Vcs-Browser:https://salsa.debian.org/med-team/covtobed
Vcs-Git:https://salsa.debian.org/med-team/covtobed.git
Testsuite:autopkgtest
Build-Depends:debhelper-compat (=13), libbamtools-dev, zlib1g-dev
Package-List:covtobed deb science optional arch=any covtobed-examples deb science optional arch=all
Files:
ddde825fa9224c9470ce6e9547b6e532 35266408 covtobed_1.1.2+dfsg.orig.tar.xz
0d1d258496455971941e2e67ae2e0ac8 5188 covtobed_1.1.2+dfsg-1.debian.tar.xz
lintian 2.78.0~bpo10+1 check for covtobed_1.1.2+dfsg-1.dsc (click to toggle)
README.source for covtobed_1.1.2+dfsg-1.dsc (click to toggle)
No README.source in this package
control file for covtobed_1.1.2+dfsg-1_amd64.deb (click to toggle)
Package:covtobed
Version:1.1.2+dfsg-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:133
Depends:libbamtools2.5.1 (>=2.5.1+dfsg), libc6 (>=2.14), libgcc-s1 (>=3.0), libstdc++6 (>=5.2), bamtools, zlib1g
Section:science
Priority:optional
Homepage:https://github.com/telatin/covtobed
Description:
convert the coverage track from a BAM file into a BED file
 Reads one (or more) alignment files (sorted BAM) and prints a BED with
 the coverage. It will join consecutive bases with the same coverage, and
 can be used to only print a BED file with the regions having a specific
 coverage range.
lintian 2.78.0~bpo10+1 check for covtobed_1.1.2+dfsg-1_amd64.deb (click to toggle)
contents of covtobed_1.1.2+dfsg-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-05-30 17:45 ./
drwxr-xr-x root/root         0 2020-05-30 17:45 ./usr/
drwxr-xr-x root/root         0 2020-05-30 17:45 ./usr/bin/
-rwxr-xr-x root/root    121000 2020-05-30 17:45 ./usr/bin/covtobed
drwxr-xr-x root/root         0 2020-05-30 17:45 ./usr/share/
drwxr-xr-x root/root         0 2020-05-30 17:45 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-05-30 17:45 ./usr/share/doc/covtobed/
-rw-r--r-- root/root       161 2020-05-30 17:45 ./usr/share/doc/covtobed/changelog.Debian.gz
-rw-r--r-- root/root      1465 2020-05-30 17:45 ./usr/share/doc/covtobed/copyright
drwxr-xr-x root/root         0 2020-05-30 17:45 ./usr/share/man/
drwxr-xr-x root/root         0 2020-05-30 17:45 ./usr/share/man/man1/
-rw-r--r-- root/root      1066 2020-05-30 17:45 ./usr/share/man/man1/covtobed.1.gz
control file for covtobed-dbgsym_1.1.2+dfsg-1_amd64.deb (click to toggle)
Package:covtobed-dbgsym
Source:covtobed
Version:1.1.2+dfsg-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:736
Depends:covtobed (=1.1.2+dfsg-1)
Section:debug
Priority:optional
Description:
debug symbols for covtobed
Build-Ids:85ac42129a2222f06a955e2051d7f0d66849a7e0
lintian 2.78.0~bpo10+1 check for covtobed-dbgsym_1.1.2+dfsg-1_amd64.deb (click to toggle)
contents of covtobed-dbgsym_1.1.2+dfsg-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-05-30 17:45 ./
drwxr-xr-x root/root         0 2020-05-30 17:45 ./usr/
drwxr-xr-x root/root         0 2020-05-30 17:45 ./usr/lib/
drwxr-xr-x root/root         0 2020-05-30 17:45 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-05-30 17:45 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-05-30 17:45 ./usr/lib/debug/.build-id/85/
-rw-r--r-- root/root    743368 2020-05-30 17:45 ./usr/lib/debug/.build-id/85/ac42129a2222f06a955e2051d7f0d66849a7e0.debug
drwxr-xr-x root/root         0 2020-05-30 17:45 ./usr/share/
drwxr-xr-x root/root         0 2020-05-30 17:45 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-05-30 17:45 ./usr/share/doc/covtobed-dbgsym -> covtobed
control file for covtobed-examples_1.1.2+dfsg-1_all.deb (click to toggle)
Package:covtobed-examples
Source:covtobed
Version:1.1.2+dfsg-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:34233
Recommends:covtobed
Section:science
Priority:optional
Homepage:https://github.com/telatin/covtobed
Description:
example data and scripts for mindthegap
 Reads one (or more) alignment files (sorted BAM) and prints a BED with
 the coverage. It will join consecutive bases with the same coverage, and
 can be used to only print a BED file with the regions having a specific
 coverage range.
 .
 This package is meant to accommodate covtobed.
lintian 2.78.0~bpo10+1 check for covtobed-examples_1.1.2+dfsg-1_all.deb (click to toggle)
contents of covtobed-examples_1.1.2+dfsg-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2020-05-30 17:45 ./
drwxr-xr-x root/root         0 2020-05-30 17:45 ./usr/
drwxr-xr-x root/root         0 2020-05-30 17:45 ./usr/share/
drwxr-xr-x root/root         0 2020-05-30 17:45 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-05-30 17:45 ./usr/share/doc/covtobed-examples/
-rw-r--r-- root/root       161 2020-05-30 17:45 ./usr/share/doc/covtobed-examples/changelog.Debian.gz
-rw-r--r-- root/root      1465 2020-05-30 17:45 ./usr/share/doc/covtobed-examples/copyright
drwxr-xr-x root/root         0 2020-05-30 17:45 ./usr/share/doc/covtobed-examples/examples/
-rw-r--r-- root/root       674 2020-05-29 11:55 ./usr/share/doc/covtobed-examples/examples/README.md
-rw-r--r-- root/root       403 2020-05-29 11:55 ./usr/share/doc/covtobed-examples/examples/del.bam
-rw-r--r-- root/root     12566 2020-05-29 11:55 ./usr/share/doc/covtobed-examples/examples/demo.bam
-rw-r--r-- root/root    379766 2020-05-29 11:55 ./usr/share/doc/covtobed-examples/examples/duplicates.bam
-rw-r--r-- root/root       292 2020-05-29 11:55 ./usr/share/doc/covtobed-examples/examples/filtered.bam
-rw-r--r-- root/root       294 2020-05-29 11:55 ./usr/share/doc/covtobed-examples/examples/filtered_unsorted.bam
-rw-r--r-- root/root       382 2020-05-29 11:55 ./usr/share/doc/covtobed-examples/examples/mock.bam
-rw-r--r-- root/root        72 2020-05-29 11:55 ./usr/share/doc/covtobed-examples/examples/mock.bed
-rw-r--r-- root/root     20106 2020-05-29 11:55 ./usr/share/doc/covtobed-examples/examples/mp.bam
drwxr-xr-x root/root         0 2020-05-29 11:55 ./usr/share/doc/covtobed-examples/examples/output/
-rw-r--r-- root/root       597 2020-05-29 11:55 ./usr/share/doc/covtobed-examples/examples/output/README.md
-rw-r--r-- root/root      4688 2020-05-29 11:55 ./usr/share/doc/covtobed-examples/examples/output/bedtools.bed
-rw-r--r-- root/root      4688 2020-05-29 11:55 ./usr/share/doc/covtobed-examples/examples/output/covtobed.bed
-rw-r--r-- root/root     62701 2020-05-29 11:55 ./usr/share/doc/covtobed-examples/examples/output/sambamba.txt
-rw-r--r-- root/root      4688 2020-05-29 11:55 ./usr/share/doc/covtobed-examples/examples/output.bed
-rw-r--r-- root/root  10900207 2020-05-29 11:55 ./usr/share/doc/covtobed-examples/examples/panel_01.bam
-rw-r--r-- root/root  23627896 2020-05-29 11:55 ./usr/share/doc/covtobed-examples/examples/panel_02.bam
-rw-r--r-- root/root      9065 2020-05-29 11:55 ./usr/share/doc/covtobed-examples/examples/target.bed
-rwxr-xr-x root/root      3618 2020-05-30 17:45 ./usr/share/doc/covtobed-examples/examples/test.sh
-rw-r--r-- root/root       243 2020-05-29 11:55 ./usr/share/doc/covtobed-examples/examples/test_cov.bam

Timestamp: 04.06.2020 / 20:12:01 (UTC)