Debian NEW package overview for coot
| coot_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.changes (click to toggle) | |
|---|---|
| Format: | 1.8 |
| Date: | Fri, 05 Apr 2024 15:10:59 +0300 |
| Source: | coot |
| Binary: | coot coot-data coot-dbgsym coot-doc libcootapi-dev libcootapi1.1 libcootapi1.1-dbgsym |
| Architecture: | source all amd64 |
| Version: | 1.1.07.705.gb7e2c16a2+dfsg-1 |
| Distribution: | unstable |
| Urgency: | medium |
| Maintainer: | Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org> |
| Changed-By: | Andrius Merkys <merkys@debian.org> |
| Description: | coot - model building program for macromolecular crystallography coot-data - various data files needed by Coot coot-doc - documentation for Coot libcootapi-dev - development files for libcoot libcootapi1.1 - shared library for coot |
| Closes: | 897673 |
| Changes: | coot (1.1.07.705.gb7e2c16a2+dfsg-1) unstable; urgency=medium * Initial release (Closes: #897673) |
| Files: | 92e8e3ac7ce5957bb9b2f8dc28cb85c3 3015 science optional coot_1.1.07.705.gb7e2c16a2+dfsg-1.dsc 08319e573768bbe4bda5e44c34a77aa9 86819852 science optional coot_1.1.07.705.gb7e2c16a2+dfsg.orig.tar.xz 3af28d98b47a70761c917383ebed776a 52144 science optional coot_1.1.07.705.gb7e2c16a2+dfsg-1.debian.tar.xz 3a35fdd6a2179dfd0bb4f8636a290582 11135376 science optional coot-data_1.1.07.705.gb7e2c16a2+dfsg-1_all.deb bc4592ccd0d66548d02462db1e7d5f12 238402548 debug optional coot-dbgsym_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.deb c98b335d1beae9b899f6c176565b79da 2109000 science optional coot-doc_1.1.07.705.gb7e2c16a2+dfsg-1_all.deb 3a6538dfd52977e3c848f227bf227bac 22159 science optional coot_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.buildinfo 8c8c98c0019816b63687d4e555c1479f 8483048 science optional coot_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.deb e750ba5b4fad97a7d94b63ebe9cf0c81 81112 libdevel optional libcootapi-dev_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.deb 641cdff36840dfcf3fba594c0741a85b 83201328 debug optional libcootapi1.1-dbgsym_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.deb 7a5707b71f4dc25d6292991f6dc13682 3548480 libs optional libcootapi1.1_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.deb |
| coot_1.1.07.705.gb7e2c16a2+dfsg-1.dsc (click to toggle) | |
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| Format: | 3.0 (quilt) |
| Source: | coot |
| Binary: | coot, coot-data, coot-doc, libcootapi-dev, libcootapi1.1 |
| Architecture: | any all |
| Version: | 1.1.07.705.gb7e2c16a2+dfsg-1 |
| Maintainer: | Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org> |
| Uploaders: | Morten Kjeldgaard <mok0@ubuntu.com>, Picca Frédéric-Emmanuel <picca@debian.org>, Andrius Merkys <merkys@debian.org>, Gürkan Myczko <tar@debian.org>, |
| Homepage: | https://github.com/pemsley/coot |
| Standards-Version: | 4.6.2 |
| Vcs-Browser: | https://salsa.debian.org/science-team/coot |
| Vcs-Git: | https://salsa.debian.org/science-team/coot.git |
| Testsuite: | autopkgtest |
| Build-Depends: | bc, cmake, debhelper-compat (=13), dh-sequence-python3, gemmi, gemmi-dev, ghostscript, imagemagick | graphicsmagick-imagemagick-compat, libblas-dev, libboost-dev, libboost-iostreams-dev, libboost-python-dev, libboost-system-dev, libboost-thread-dev, libcairo-dev, libccp4-data, libclipper-dev, libcurl4-gnutls-dev | libcurl-dev, libeigen3-dev, libgl-dev, libglib2.0-dev, libglm-dev, libgsl-dev, libgtkmm-4.0-dev, libmmdb2-dev, libpng-dev, libpython3-dev, librdkit-dev, libsqlite3-dev, libssm-dev, nanobind-dev, python-gi-dev, python3-distutils, python3-rdkit, python3-requests, sharutils, swig, tao-pegtl-dev |
| Package-List: | coot deb science optional arch=any coot-data deb science optional arch=all coot-doc deb science optional arch=all libcootapi-dev deb libdevel optional arch=any libcootapi1.1 deb libs optional arch=any |
| Files: | 08319e573768bbe4bda5e44c34a77aa9 86819852 coot_1.1.07.705.gb7e2c16a2+dfsg.orig.tar.xz 3af28d98b47a70761c917383ebed776a 52144 coot_1.1.07.705.gb7e2c16a2+dfsg-1.debian.tar.xz |
| README.source for coot_1.1.07.705.gb7e2c16a2+dfsg-1.dsc (click to toggle) | |
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| No README.source in this package | |
| control file for coot_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.deb (click to toggle) | |
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| Package: | coot |
| Version: | 1.1.07.705.gb7e2c16a2+dfsg-1 |
| Architecture: | amd64 |
| Maintainer: | Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org> |
| Installed-Size: | 31886 |
| Depends: | coot-data, refmac-dictionary, python3 (<<3.12), python3 (>=3.11~), python3:any, libblas3 | libblas.so.3, libboost-python1.83.0 (>=1.83.0), libboost-python1.83.0-py311, libc6 (>=2.34), libcairo2 (>=1.4.10), libclipper2 (>=2.1.20201109), libcootapi1.1 (>=1.1.07.705.gb7e2c16a2+dfsg), libcurl3t64-gnutls (>=7.16.2), libepoxy0 (>=1.3), libfreetype6 (>=2.2.1), libgcc-s1 (>=4.0), libgdk-pixbuf-2.0-0 (>=2.22.0), libglib2.0-0t64 (>=2.75.3), libgomp1 (>=6), libgraphene-1.0-0 (>=1.5.4), libgsl27 (>=2.7.1), libgtk-4-1 (>=4.9.2), libmmdb2-0 (>=2.0.22), libpango-1.0-0 (>=1.14.0), libpangocairo-1.0-0 (>=1.14.0), libpng16-16t64 (>=1.6.2), libpython3.11t64 (>=3.11.5), librdkit1 (>=202309.3), libsqlite3-0 (>=3.5.9), libssm2 (>=1.4.0), libstdc++6 (>=13.1), zlib1g (>=1:1.2.6) |
| Suggests: | coot-doc |
| Section: | science |
| Priority: | optional |
| Homepage: | https://github.com/pemsley/coot |
| Description: | model building program for macromolecular crystallography This is a program for constructing atomic models of macromolecules from x-ray diffraction data. Coot displays electron density maps and molecular models and allows model manipulations such as idealization, refinement, manual rotation/translation, rigid-body fitting, ligand search, solvation, mutations, rotamers. Validation tools such as Ramachandran and geometry plots are available to the user. This package provides a Coot build with embedded Python support. |
| contents of coot_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.deb (click to toggle) | |
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drwxr-xr-x root/root 0 2024-04-05 12:10 ./ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/bin/ -rwxr-xr-x root/root 6763 2024-04-05 12:10 ./usr/bin/coot -rwxr-xr-x root/root 19040 2024-04-05 12:10 ./usr/bin/coot-bfactan -rwxr-xr-x root/root 3196 2024-04-05 12:10 ./usr/bin/coot-density-score-by-residue -rwxr-xr-x root/root 1995 2024-04-05 12:10 ./usr/bin/coot-identify-protein -rwxr-xr-x root/root 1230 2024-04-05 12:10 ./usr/bin/coot-ligand-validation -rwxr-xr-x root/root 1216 2024-04-05 12:10 ./usr/bin/coot-mini-rsr -rwxr-xr-x root/root 2865 2024-04-05 12:10 ./usr/bin/findligand -rwxr-xr-x root/root 2865 2024-04-05 12:10 ./usr/bin/findwaters -rwxr-xr-x root/root 19008 2024-04-05 12:10 ./usr/bin/layla -rwxr-xr-x root/root 23184 2024-04-05 12:10 ./usr/bin/mmrrcc -rwxr-xr-x root/root 840 2024-04-05 12:10 ./usr/bin/pyrogen drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/lib/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/lib/python3/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/lib/python3/dist-packages/ -rw-r--r-- root/root 2399160 2024-04-05 12:10 ./usr/lib/python3/dist-packages/_coot.cpython-311-x86_64-linux-gnu.so -rw-r--r-- root/root 1024184 2024-04-05 12:10 ./usr/lib/python3/dist-packages/_coot_headless_api.cpython-311-x86_64-linux-gnu.so -rw-r--r-- root/root 479608 2024-04-05 12:10 ./usr/lib/python3/dist-packages/_pyrogen_swig.cpython-311-x86_64-linux-gnu.so -rw-r--r-- root/root 615600 2024-04-05 12:10 ./usr/lib/python3/dist-packages/chapi.cpython-311-x86_64-linux-gnu.so drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/ -rw-r--r-- root/root 20661 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/add_linked_cho.py -rw-r--r-- root/root 1210 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/americanisms.py -rw-r--r-- root/root 34622 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/atom_types.py -rw-r--r-- root/root 2178 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/background_demo.py -rw-r--r-- root/root 6048 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/bones_reader.py -rw-r--r-- root/root 2002 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/brute_lsqman.py -rw-r--r-- root/root 16025 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/check_for_updates.py -rw-r--r-- root/root 6516 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/cho_restraints_from_models.py -rw-r--r-- root/root 7737 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/clear_backup.py -rw-r--r-- root/root 6847 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/cns2coot.py -rw-r--r-- root/root 14284 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/coot_acedrg_link.py -rw-r--r-- root/root 28901 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/coot_chemical_feature_clusters.py -rw-r--r-- root/root 3800 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/coot_contact_score_isolated_ligand.py -rw-r--r-- root/root 17661 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/coot_find_baddies.py -rw-r--r-- root/root 36454 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/coot_fitting.py -rw-r--r-- root/root 31762 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/coot_generator_3d_import.py -rw-r--r-- root/root 38 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/coot_git.py -rw-r--r-- root/root 248367 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/coot_gui.py -rw-r--r-- root/root 5095 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/coot_hole.py -rw-r--r-- root/root 13047 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/coot_ligand_check.py -rw-r--r-- root/root 4549 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/coot_load_modules.py -rw-r--r-- root/root 3463 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/coot_lsq.py -rw-r--r-- root/root 13661 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/coot_ncs.py -rw-r--r-- root/root 8197 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/coot_output_to_window.py -rw-r--r-- root/root 13343 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/coot_redefine_functions.py -rw-r--r-- root/root 919 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/coot_res_spec_utils.py -rw-r--r-- root/root 5335 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/coot_sharpen_blur.py -rw-r--r-- root/root 10419 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/coot_testing_utils.py -rw-r--r-- root/root 31613 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/coot_toolbuttons.py -rw-r--r-- root/root 155618 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/coot_utils.py -rw-r--r-- root/root 1755 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/create_server.py -rw-r--r-- root/root 2066 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/dictionary_generators.py -rw-r--r-- root/root 10103 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/enhanced_ligand.py -rw-r--r-- root/root 2361 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/extensions.py -rw-r--r-- root/root 1230 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/filter.py -rw-r--r-- root/root 14116 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/gap.py -rw-r--r-- root/root 22438 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/generic_objects.py -rw-r--r-- root/root 15895 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/get_ebi.py -rw-r--r-- root/root 43397 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/get_recent_pdbe.py -rw-r--r-- root/root 1547 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/group_settings.py -rw-r--r-- root/root 36757 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/gui_add_linked_cho.py -rw-r--r-- root/root 739 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/gui_contact_score_isolated_ligand.py -rw-r--r-- root/root 3450 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/gui_hole.py -rw-r--r-- root/root 5527 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/gui_ligand_sliders.py -rw-r--r-- root/root 11560 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/gui_prosmart.py -rw-r--r-- root/root 2640 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/hello.py -rw-r--r-- root/root 3485 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/interactive_nudge_residues.py -rw-r--r-- root/root 499 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/jay_util.py -rw-r--r-- root/root 8881 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/jligand.py -rw-r--r-- root/root 4738 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/jligand_gui.py -rw-r--r-- root/root 10656 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/libcheck.py -rw-r--r-- root/root 11993 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/ligand_validation_sliders.py -rw-r--r-- root/root 191 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/local_code.py -rw-r--r-- root/root 11154 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/mutate.py -rw-r--r-- root/root 28188 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/parse_pisa_xml.py -rw-r--r-- root/root 3049 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/pathology_plots.py -rw-r--r-- root/root 34965 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/pdbe_validation_data.py -rw-r--r-- root/root 52228 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/populate_python_menus.py -rw-r--r-- root/root 3036 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/povray.py -rw-r--r-- root/root 50106 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/pyrogen.py -rw-r--r-- root/root 13881 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/pyrogen_swig.py -rw-r--r-- root/root 4361 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/python_coot_docs.py -rw-r--r-- root/root 10725 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/raster3d.py -rw-r--r-- root/root 2865 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/rcrane_loader.py -rw-r--r-- root/root 2509 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/refine.py -rw-r--r-- root/root 69328 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/refmac.py -rw-r--r-- root/root 8673 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/remote_control.py -rw-r--r-- root/root 8 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/run_mogul.py -rw-r--r-- root/root 26477 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/shelx.py -rw-r--r-- root/root 9624 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/shelx_extensions.py -rw-r--r-- root/root 25153 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/tautomer.py -rw-r--r-- root/root 8032 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/template_key_bindings.py -rw-r--r-- root/root 4275 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/tips.py -rw-r--r-- root/root 3474 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/tips_gui.py -rw-r--r-- root/root 22486 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/user_define_restraints.py -rw-r--r-- root/root 12312 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot/what_check.py -rwxr-xr-x root/root 532794 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot.py -rw-r--r-- root/root 109566 2024-04-05 12:10 ./usr/lib/python3/dist-packages/coot_headless_api.py -rw-r--r-- root/root 227272 2024-04-05 12:10 ./usr/lib/python3/dist-packages/pyrogen_boost.cpython-311-x86_64-linux-gnu.so drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/ -rw-r--r-- root/root 683152 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libMoleculesToTrianglesCXXClasses.so.0.0.0 -rw-r--r-- root/root 602336 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libMoleculesToTrianglesCXXSurface.so.0.0.0 -rw-r--r-- root/root 233672 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libccp4mg-utils.so.0.0.0 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./usr/lib/x86_64-linux-gnu/coot/libcoot-geometry.so.0.0.0 -rw-r--r-- root/root 212928 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-high-res.so.0.0.0 -rw-r--r-- root/root 1442360 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-ideal.so.0.0.0 -rw-r--r-- root/root 118024 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-isosurface.so.0.0.0 -rw-r--r-- root/root 469888 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-layla.so.0.0.0 -rw-r--r-- root/root 712064 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-lidia-core.so.0.0.0 -rw-r--r-- root/root 1695160 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-ligand.so.0.0.0 -rw-r--r-- root/root 130608 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-map-heavy.so.0.0.0 -rw-r--r-- root/root 468568 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-map-utils.so.0.0.0 -rw-r--r-- root/root 150864 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-mini-mol.so.0.0.0 -rw-r--r-- 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./usr/share/icons/hicolor/scalable/apps/coot.svg drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/share/man/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/share/man/man1/ -rw-r--r-- root/root 348 2024-04-05 12:10 ./usr/share/man/man1/coot-available-comp-id.1.gz -rw-r--r-- root/root 178 2024-04-05 12:10 ./usr/share/man/man1/coot-bfactan.1.gz -rw-r--r-- root/root 826 2024-04-05 12:10 ./usr/share/man/man1/coot-compare-dictionaries.1.gz -rw-r--r-- root/root 311 2024-04-05 12:10 ./usr/share/man/man1/coot-density-score-by-residue.1.gz -rw-r--r-- root/root 189 2024-04-05 12:10 ./usr/share/man/man1/coot-fix-nomenclature-errors.1.gz -rw-r--r-- root/root 206 2024-04-05 12:10 ./usr/share/man/man1/coot-make-shelx-restraints.1.gz -rw-r--r-- root/root 1026 2024-04-05 12:10 ./usr/share/man/man1/coot-mini-rsr.1.gz -rw-r--r-- root/root 3058 2024-04-05 12:10 ./usr/share/man/man1/coot.1.gz -rw-r--r-- root/root 655 2024-04-05 12:10 ./usr/share/man/man1/density-score-by-residue.1.gz -rw-r--r-- root/root 1007 2024-04-05 12:10 ./usr/share/man/man1/findligand.1.gz -rw-r--r-- root/root 867 2024-04-05 12:10 ./usr/share/man/man1/findwaters.1.gz -rw-r--r-- root/root 386 2024-04-05 12:10 ./usr/share/man/man1/fix-nomenclature-errors.1.gz -rw-r--r-- root/root 354 2024-04-05 12:10 ./usr/share/man/man1/lidia.1.gz drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/share/metainfo/ -rw-r--r-- root/root 1631 2024-04-05 12:10 ./usr/share/metainfo/coot.appdata.xml lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libMoleculesToTrianglesCXXClasses.so -> libMoleculesToTrianglesCXXClasses.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libMoleculesToTrianglesCXXClasses.so.0 -> libMoleculesToTrianglesCXXClasses.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libMoleculesToTrianglesCXXSurface.so -> libMoleculesToTrianglesCXXSurface.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libMoleculesToTrianglesCXXSurface.so.0 -> libMoleculesToTrianglesCXXSurface.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libccp4mg-utils.so -> libccp4mg-utils.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libccp4mg-utils.so.0 -> libccp4mg-utils.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-AngleInfo.so -> libcoot-AngleInfo.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-AngleInfo.so.0 -> libcoot-AngleInfo.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-analysis.so -> libcoot-analysis.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-analysis.so.0 -> libcoot-analysis.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-api.so -> libcoot-api.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-api.so.0 -> libcoot-api.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-cabuild.so -> libcoot-cabuild.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-cabuild.so.0 -> libcoot-cabuild.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-compat.so -> libcoot-compat.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-compat.so.0 -> libcoot-compat.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-coord-extras.so -> libcoot-coord-extras.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-coord-extras.so.0 -> libcoot-coord-extras.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-coord-utils.so -> libcoot-coord-utils.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-coord-utils.so.0 -> libcoot-coord-utils.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-coords.so -> libcoot-coords.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-coords.so.0 -> libcoot-coords.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-db-main.so -> libcoot-db-main.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-db-main.so.0 -> libcoot-db-main.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-geometry.so -> libcoot-geometry.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-geometry.so.0 -> libcoot-geometry.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-high-res.so -> libcoot-high-res.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-high-res.so.0 -> libcoot-high-res.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-ideal.so -> libcoot-ideal.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-ideal.so.0 -> libcoot-ideal.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-isosurface.so -> libcoot-isosurface.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-isosurface.so.0 -> libcoot-isosurface.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-layla.so -> libcoot-layla.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-layla.so.0 -> libcoot-layla.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-lidia-core.so -> libcoot-lidia-core.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-lidia-core.so.0 -> libcoot-lidia-core.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-ligand.so -> libcoot-ligand.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-ligand.so.0 -> libcoot-ligand.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-map-heavy.so -> libcoot-map-heavy.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-map-heavy.so.0 -> libcoot-map-heavy.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-map-utils.so -> libcoot-map-utils.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-map-utils.so.0 -> libcoot-map-utils.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-mini-mol.so -> libcoot-mini-mol.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-mini-mol.so.0 -> libcoot-mini-mol.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-pli.so -> libcoot-pli.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-pli.so.0 -> libcoot-pli.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-protein-db.so -> libcoot-protein-db.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-protein-db.so.0 -> libcoot-protein-db.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-res-tracer.so -> libcoot-res-tracer.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-res-tracer.so.0 -> libcoot-res-tracer.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-skeleton.so -> libcoot-skeleton.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-skeleton.so.0 -> libcoot-skeleton.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-utils.so -> libcoot-utils.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-utils.so.0 -> libcoot-utils.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-validation-graphs.so -> libcoot-validation-graphs.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot-validation-graphs.so.0 -> libcoot-validation-graphs.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot_py_restraints.so -> libcoot_py_restraints.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcoot_py_restraints.so.0 -> libcoot_py_restraints.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcootaneer.so -> libcootaneer.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcootaneer.so.0 -> libcootaneer.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcootilus.so -> libcootilus.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcootilus.so.0 -> libcootilus.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcootsumo.so -> libcootsumo.so.0.0.0 lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/coot/libcootsumo.so.0 -> libcootsumo.so.0.0.0 | |
| copyright of coot_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.deb (click to toggle) | |
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Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: Coot
Upstream-Contact: https://github.com/pemsley/coot/issues
Source: https://github.com/pemsley/coot
Files-Excluded:
fonts
Files: *
Copyright: 2001-2007, The University of York
2007-2012, The University of Oxford
2012-2016, Medical Research Council
1999-2024, Paul Emsley
License: GPL-3+
Files: analysis/b-factor-histogram.cc
analysis/coot-daca.cc
analysis/daca.cc
analysis/daca.hh
analysis/improper-dihedrals.cc
analysis/mogul-interface.hh
analysis/rna-backbone.cc
analysis/rna-backbone.hh
analysis/test-align.cc
analysis/test-cablam.cc
analysis/test-mogul.cc
analysis/test-rna-backbone.cc
analysis/test-stats.cc
analysis/typed-distances.cc
analysis/typed-distances.hh
api/add-terminal-residue.cc
api/add-terminal-residue.hh
api/api-cell.hh
api/atom-pull.hh
api/blender-mesh.cc
api/blender-mesh.hh
api/bond-colour.hh
api/cell.hh
api/clipper-ccp4-map-file-wrapper.hh
api/colour-functions.cc
api/colour-functions.hh
api/coot-colour.hh
api/coot-molecule-backup.cc
api/coot-molecule-blender.cc
api/coot-molecule-bonds-instanced.cc
api/coot-molecule-bonds.hh
api/coot-molecule-change-chain-id.cc
api/coot-molecule-maps.cc
api/coot-molecule-merge-molecules.cc
api/coot-molecule-moltris.cc
api/coot-molecule-refine.cc
api/coot-molecule-replace-fragment.cc
api/coot-molecule-validation.cc
api/coot-molecule.cc
api/coot-molecule.hh
coords/graphical-bonds-container.hh
coords/graphics-line.hh
coords/loop-path.cc
coords/loop-path.hh
coords/phenix-geo-bonds.cc
coords/phenix-geo.cc
coords/phenix-geo.hh
coords/phi-psi-prob.cc
coords/phi-psi-prob.hh
coords/rama-plot-phi-psi.cc
coords/rama-plot-phi-psi.hh
coords/ramachandran-container.hh
coords/ramachandran-validation.cc
coords/ramachandran-validation.hh
coords/rotamer-container.hh
coords/rotamer-markup.cc
coords/test-phenix-geo.cc
coords/test-transform.cc
coords/torus-description.hh
coot-utils/3d-texture.cc
coot-utils/3d-texture.hh
coot-utils/amp-reso.hh
coot-utils/arc-info.hh
coot-utils/atom-tools.cc
coot-utils/atom-tools.hh
coot-utils/atom-tree.hh
coot-utils/atom-vertex.hh
coot-utils/blob-line.cc
coot-utils/blob-line.hh
coot-utils/bonded-atoms.cc
coot-utils/bonded-atoms.hh
coot-utils/bricks.cc
coot-utils/c-beta-deviations.cc
coot-utils/c-beta-deviations.hh
coot-utils/cablam-markup.cc
coot-utils/cablam-markup.hh
coot-utils/cis-peptide-info.hh
coot-utils/cmtz-interface.cc
coot-utils/cmtz-interface.hh
coot-utils/cod-db-access.cc
coot-utils/contact-info.cc
coot-utils/contact-info.hh
coot-utils/contacts-by-bricks.cc
coot-utils/contacts-by-bricks.hh
coot-utils/coot-least-squares.hh
coot-utils/cylinder-with-rotation-translation.cc
coot-utils/cylinder-with-rotation-translation.hh
coot-utils/cylinder.cc
coot-utils/cylinder.hh
coot-utils/diff-diff-map-peaks.cc
coot-utils/diff-diff-map-peaks.hh
coot-utils/emma.hh
coot-utils/exp-fit.cc
coot-utils/exp-fit.hh
coot-utils/fast-eigens.cc
coot-utils/fast-eigens.hh
coot-utils/fib-sphere.cc
coot-utils/fib-sphere.hh
coot-utils/find-pepflip-using-difference-map.cc
coot-utils/find-pepflip-using-difference-map.hh
coot-utils/find-water-baddies.cc
coot-utils/find-water-baddies.hh
coot-utils/fragment-container.cc
coot-utils/fragment-container.hh
coot-utils/g_triangle.hh
coot-utils/gltf-export.cc
coot-utils/glyco-tree.hh
coot-utils/helix-like.cc
coot-utils/helix-like.hh
coot-utils/jed-flip.cc
coot-utils/jed-flip.hh
coot-utils/lidia-core-functions.cc
coot-utils/lidia-core-functions.hh
coot-utils/make-cablam-like-stats.cc
coot-utils/map-index.hh
coot-utils/merge-C-and-N-terminii.cc
coot-utils/merge-C-and-N-terminii.hh
coot-utils/merge-atom-selections.cc
coot-utils/merge-atom-selections.hh
coot-utils/merge-molecules.cc
coot-utils/merge-molecules.hh
coot-utils/mmrrcc.cc
coot-utils/mtz-column-auto-read.hh
coot-utils/mutate.cc
coot-utils/oct.cc
coot-utils/oct.hh
coot-utils/parse-pisa.cc
coot-utils/parse-pisa.hh
coot-utils/pepflip-using-difference-map.cc
coot-utils/pepflip-using-difference-map.hh
coot-utils/plane-utils.cc
coot-utils/plane-utils.hh
coot-utils/polar-atoms.cc
coot-utils/polar-atoms.hh
coot-utils/positron.cc
coot-utils/positron.hh
coot-utils/prideout-octasphere.hh
coot-utils/reduce.cc
coot-utils/reduce.hh
coot-utils/secondary-structure-headers.cc
coot-utils/secondary-structure-headers.hh
coot-utils/segmap.cc
coot-utils/segmap.hh
coot-utils/sfcalc-genmap.hh
coot-utils/shape-types.hh
coot-utils/shapes.cc
coot-utils/shapes.hh
coot-utils/simple-mesh.cc
coot-utils/simple-mesh.hh
coot-utils/spherical-harmonics.cc
coot-utils/spherical-harmonics.hh
coot-utils/stack-and-pair.cc
coot-utils/stack-and-pair.hh
coot-utils/strand-fragments.cc
coot-utils/strand-fragments.hh
coot-utils/strand-like.hh
coot-utils/test-5-residue-fragments.cc
coot-utils/test-cod-atom-types-from-sm-cif.cc
coot-utils/test-convolute.cc
coot-utils/test-coot-probe.cc
coot-utils/test-diff-diff-map-peaks.cc
coot-utils/test-emma.cc
coot-utils/test-parse-pisa.cc
coot-utils/test-segmap.cc
coot-utils/vertex.hh
density-contour/gaussian-surface.cc
density-contour/gaussian-surface.hh
density-contour/occlusion.cc
density-contour/occlusion.hh
density-contour/test-gaussian-surface.cc
density-contour/test-occlusion.cc
density-contour/transfer-occlusions.hh
geometry/bonded-quad.hh
geometry/chem_mods.hh
geometry/cif-parse-mon-lib.cc
geometry/compare-dictionaries.cc
geometry/dict-mismatches.hh
geometry/dict-utils.cc
geometry/dict-utils.hh
geometry/dictionary-bond-distributions.cc
geometry/dreiding.cc
geometry/gphl-chem-comp-info.hh
geometry/hb-types.hh
geometry/hydrophobic.cc
geometry/hydrophobic.hh
geometry/intercept-3GP.cc
geometry/main-chain.cc
geometry/main-chain.hh
geometry/make-shelx-restraints.cc
geometry/match-results.hh
geometry/mol-utils-2.cc
geometry/mol-utils-2.hh
geometry/mol-utils.cc
geometry/mol-utils.hh
geometry/pdbe-chem-comp-atom-depiction.hh
geometry/pdbx-chem-comp-description-generator.hh
geometry/protein-donor-acceptors.cc
geometry/protein-donor-acceptors.hh
geometry/read-metals-json.cc
geometry/residue-and-atom-specs.cc
geometry/srs-interface.cc
geometry/srs-interface.hh
high-res/high-res.hh
ideal/coot-compare-residues.cc
ideal/crankshaft-test.cc
ideal/crankshaft.cc
ideal/crankshaft.hh
ideal/extra-restraints.hh
ideal/lv.cc
ideal/model-bond-deltas.cc
ideal/model-bond-deltas.hh
ideal/neutron.cc
ideal/new-linked-residue-t.hh
ideal/ng.cc
ideal/parallel-planes.cc
ideal/parallel-planes.hh
ideal/phi-psi.cc
ideal/phi-psi.hh
ideal/process-dfs-in-range.cc
ideal/process-dfs-in-range.hh
ideal/pull-restraint.cc
ideal/rama-types.hh
ideal/refinement-lights.hh
ideal/refinement-results-t.hh
ideal/simulated-annealing.cc
ideal/test-rama-plot.cc
ideal/torsion-bonds.cc
ideal/torsion-bonds.hh
ideal/trans-peptide.cc
ideal/write-png.cc
ideal/write-png.hh
ideal/zo-rama.cc
ideal/zo-rama.hh
lidia-core/atom-types.cc
lidia-core/get-residue.cc
lidia-core/get-residue.hh
lidia-core/neighbour-sorter.hh
lidia-core/svg-molecule.cc
lidia-core/svg-molecule.hh
lidia-core/test-lig-build.cc
lidia-core/third-neighbour-info-t.hh
lidia-core/use-rdkit.hh
ligand/ca-torsion-info.cc
ligand/ca-torsion-info.hh
ligand/dSFMT-params19937.h
ligand/joining-residues.cc
ligand/libres-tracer.cc
ligand/libres-tracer.hh
ligand/ligand-score-card.hh
ligand/map-point-cluster.hh
ligand/multi-peptide.hh
ligand/new-residue-by-3-phi-psi.cc
ligand/new-residue-by-3-phi-psi.hh
ligand/rama-rsr-extend-fragments.cc
ligand/rama-rsr-extend-fragments.hh
ligand/refine-isolated-chain.cc
ligand/refine-isolated-chain.hh
ligand/res-tracer.cc
ligand/scored-molecule.hh
ligand/scored-node.hh
ligand/side-chain-densities.cc
ligand/side-chain-densities.hh
ligand/side-chain.cc
ligand/side-chain.hh
ligand/smith-waterman.hh
ligand/test-tube-finder.cc
ligand/tube-finder.cc
ligand/tube-finder.hh
mini-mol/mol-hierarchy.cc
pli/flev-annotations.cc
pli/protein-ligand-interactions.hh
pli/sdf-interface-for-export.hh
pli/sdf-internal.hh
pli/specs.cc
pli/specs.hh
pyrogen/cairo-molecule.cc
pyrogen/cairo-molecule.hh
src/9.ssao.shader
src/9.ssao_blur.shader
src/9.ssao_geometry.shader
src/Basic.shader
src/HUDMesh.cc
src/HUDMesh.hh
src/HUDTextureMesh.cc
src/HUDTextureMesh.hh
src/Instanced-Markup-Mesh.cc
src/Instanced-Markup-Mesh.hh
src/LigandViewMesh.cc
src/LigandViewMesh.hh
src/LinesMesh.cc
src/LinesMesh.hh
src/Material.hh
src/Mesh-from-glTF.cc
src/Mesh-from-graphical-bonds-instanced.cc
src/Mesh-from-graphical-bonds.cc
src/Mesh.cc
src/Mesh.hh
src/Model.cc
src/Model.hh
src/Particle.cc
src/Particle.hh
src/Shader.cc
src/Shader.hh
src/TemplateMesh.hh
src/Texture.cc
src/Texture.hh
src/TextureMesh.cc
src/TextureMesh.hh
src/animated-ligand.hh
src/array-2d.hh
src/atom-label-info.hh
src/atom-label.shader
src/atom-overlaps.cc
src/atom-pull.hh
src/background-image.shader
src/blur-x.shader
src/blur-y.shader
src/blur.shader
src/boids.cc
src/boids.hh
src/bond-colour-mode.hh
src/boot-python.cc
src/c-interface-bonds.cc
src/c-interface-bonds.hh
src/c-interface-curlew.cc
src/c-interface-curlew.hh
src/c-interface-geometry-distortion.hh
src/c-interface-gui.hh
src/c-interface-image.cc
src/c-interface-ligand-search.hh
src/c-interface-ligands-widgets.hh
src/c-interface-mogul-scripting.cc
src/c-interface-refine.hh
src/c-interface-sequence.cc
src/c-interface-sequence.hh
src/camera-facing-quad-shader-for-testing.shader
src/cc-interface-alignment.cc
src/cc-interface-alignment.hh
src/cc-interface-graphics.cc
src/cc-interface-graphics.hh
src/cc-interface-image.hh
src/cc-interface-map-utils.cc
src/cc-interface-merge.cc
src/cc-interface-molecular-representation.cc
src/cc-interface-molecular-representation.hh
src/cc-interface-molecular-symmetry.cc
src/cc-interface-png.cc
src/cc-interface-scripting.cc
src/cc-interface-user-defined-atom-colours.cc
src/cc-interface-user-defined-atom-colours.hh
src/central-cube.shader
src/cfc-widgets.hh
src/cfc.cc
src/cfc.hh
src/change-dir.cc
src/change-dir.hh
src/clip-hybrid-atom.hh
src/clipper-ccp4-map-file-wrapper.hh
src/clipper-to-glm.hh
src/cmtz-interface-gui.hh
src/colour-functions.hh
src/colour-holder-to-glm.hh
src/coot-application.cc
src/coot-application.hh
src/coot-colour.cc
src/coot-phi-psi.cc
src/coot-phi-psi.hh
src/coot-setup-python.hh
src/coot-version.hh
src/create-menu-item-actions.cc
src/create-menu-item-actions.hh
src/crunch-model.hh
src/curl-utils.hh
src/curlew-gtk4.cc
src/curlew-gtk4.hh
src/curlew.h
src/data-pair-remover.hh
src/density-results-container-t.hh
src/depth-of-field.shader
src/draw-2.hh
src/draw-generic-display-objects.cc
src/draw-map-cap.shader
src/draw.cc
src/draw.hh
src/dynamic-validation.cc
src/dynamic-validation.hh
src/effects.shader
src/event-controller-callbacks.cc
src/event-controller-callbacks.hh
src/extra-distance-restraint-markup.hh
src/extra-distance-restraints.shader
src/extra-restraints-representation.hh
src/eyes.cc
src/eyes.hh
src/fit-loop-gui.cc
src/fit-loop-gui.hh
src/fit-loop.cc
src/fit-loop.hh
src/fixup-interface.h.sh
src/framebuffer.cc
src/framebuffer.hh
src/fresnel-settings.hh
src/ft-character.hh
src/gaussian-surface.cc
src/generic-vertex.hh
src/gensurf.hh
src/gl-rama-plot.cc
src/gl-rama-plot.hh
src/glarea_tick_function.hh
src/globularize.cc
src/graphical-molecule.cc
src/graphical-molecule.hh
src/graphics-info-defines-gtk4.cc
src/graphics-info-draw-models.cc
src/graphics-info-draw.cc
src/graphics-info-init.cc
src/graphics-info-intermediate.cc
src/graphics-info-opengl.cc
src/graphics-info-refine.cc
src/graphics-info-render-scene.cc
src/graphics-info-statics.cc
src/graphics-info-tick-function.cc
src/graphics-ligand-mesh-molecule.cc
src/graphics-ligand-mesh-molecule.hh
src/gtkglarea-rama-plot.hh
src/hud-bars.shader
src/hud-geometry-tooltip-text.shader
src/hud-image-texture.shader
src/hud-labels.shader
src/hud-lines.shader
src/hud-text.shader
src/idles.hh
src/init-from-gtkbuilder.cc
src/init-from-gtkbuilder.hh
src/init_coot_as_python_module.cc
src/init_coot_as_python_module.hh
src/instanced-meshes-for-shadow-map.shader
src/instanced-meshes-for-ssao.shader
src/instanced-meshes-with-shadows.shader
src/instanced-objects.shader
src/key-bindings.cc
src/key-bindings.hh
src/labelled-button-info.hh
src/ligand-check.hh
src/ligand-view.shader
src/lights-info.hh
src/lines-pulse.shader
src/lines.shader
src/make-a-dodec.cc
src/make-a-dodec.hh
src/map.shader
src/map_triangle.hh
src/matrix-utils.cc
src/matrix-utils.hh
src/meshed-generic-display-object.cc
src/meshed-generic-display-object.hh
src/meshed-particle-container.hh
src/meshes-for-shadow-map.shader
src/meshes-for-ssao.shader
src/meshes-with-shadows.shader
src/meshes.shader
src/model-as-mesh.shader
src/model-molecule-meshes.cc
src/model-molecule-meshes.hh
src/model.shader
src/mol-hierarchy.cc
src/mol-tri.hh
src/molecular-mesh-generator-mol-tris.cc
src/molecular-mesh-generator.cc
src/molecular-mesh-generator.hh
src/molecular-triangles-mesh.hh
src/molecule-class-info-alignment.cc
src/molecule-class-info-analysis.cc
src/molecule-class-info-bonds.cc
src/molecule-class-info-dots-internal.cc
src/molecule-class-info-geometry.cc
src/molecule-class-info-maps-2.cc
src/molecule-class-info-mol-tris.cc
src/molecule-class-info-molecular-symmetry.cc
src/molecule-class-info-string.cc
src/moleculestotriangles.shader
src/mtz-column-auto-read.hh
src/new-startup.cc
src/obj_loader.cc
src/obj_loader.h
src/old-event-callbacks.cc
src/old-generic-display-object.cc
src/old-generic-display-object.hh
src/outline-of-active-residue.shader
src/particles.shader
src/pick.hh
src/positron-plot.cc
src/pulse-data.hh
src/pumpkin.cc
src/pumpkin.hh
src/python-classes.cc
src/python-classes.hh
src/python-scripting-gui.hh
src/rail-points.hh
src/rama-balls.shader
src/rama-plot-axes-and-ticks.shader
src/rama-plot-phi-psi-markers.shader
src/rama-plot-phi-psi.cc
src/rama-plot-phi-psi.hh
src/rdkit-smiles.cc
src/read-cif.cc
src/read-molecule.hh
src/residue-markers-for-ssao.shader
src/residue-markers.shader
src/restore-these.hh
src/rotation-centre-cross-hairs-for-ssao.shader
src/rsr-functions.cc
src/rsr-functions.hh
src/screen.shader
src/screendump-tga.cc
src/screendump-tga.hh
src/setup-gui-components.cc
src/setup-gui-components.hh
src/shadow-map-image-texture.shader
src/simple-distance-object.hh
src/simple-refmac.cc
src/single-map-properties-dialog.cc
src/single-map-properties-dialog.hh
src/sound-mac.cc
src/sound.cc
src/sound.hh
src/spherical-density.cc
src/startup-utils.cc
src/startup-utils.hh
src/symmetry-atoms-lines.shader
src/template-python-function.cc
src/testing-2.cc
src/text-rendering-utils.cc
src/text-rendering-utils.hh
src/texture-meshes-for-ssao.shader
src/texture-meshes-shadow-map.shader
src/texture-meshes-with-shadows.shader
src/texture-meshes.shader
src/ud-colour-rule.hh
src/updating-coordinates-molecule-parameters.hh
src/updating-map-params.hh
src/validation.cc
src/validation.hh
src/vnc-vertex-to-generic-vertex.hh
src/widget-from-builder.cc
src/widget-from-builder.hh
src/widget-headers.hh
utils/dodec.cc
utils/dodec.hh
utils/split-indices.cc
utils/split-indices.hh
utils/test-logging.cc
utils/test-utils.cc
utils/threads.cc
utils/win-compat.cc
utils/win-compat.hh
validation-graphs/gtk4-test-sequence-view.cc
validation-graphs/gtk4-test-validation-graph.cc
validation-graphs/residue-validation-information.cc
validation-graphs/residue-validation-information.hh
validation-graphs/validation-graphs.cc
validation-graphs/validation-graphs.hh
validation-graphs/validation-information.cc
validation-graphs/validation-information.hh
Copyright: 2007, Medical Research Council
2011, Medical Research Council
2012, Medical Research Council
2012-2014, Medical Research Council
2013, 2015, Medical Research Council
2013, Medical Research Council
2014, Medical Research Council
2014-2015, Medical Research Council
2015, Medical Research Council
2016, Medical Research Council
2017, Medical Research Council
2018, Medical Research Council
2019, Medical Research Council
2020, Medical Research Council
2021, Medical Research Council
2022, Medical Research Council
2023, Medical Research Council
2024, Medical Research Council
License: LGPL-3+
Files: MoleculesToTriangles/CXXClasses/AtomPropertyRampColorRule.cpp
MoleculesToTriangles/CXXClasses/AtomPropertyRampColorRule.h
MoleculesToTriangles/CXXClasses/BallsPrimitive.cpp
MoleculesToTriangles/CXXClasses/BallsPrimitive.h
MoleculesToTriangles/CXXClasses/BondsPrimitive.cpp
MoleculesToTriangles/CXXClasses/BondsPrimitive.h
MoleculesToTriangles/CXXClasses/BoostWrappers.cpp
MoleculesToTriangles/CXXClasses/BoxSectionPrimitive.cpp
MoleculesToTriangles/CXXClasses/BoxSectionPrimitive.h
MoleculesToTriangles/CXXClasses/CXXMatrix.cpp
MoleculesToTriangles/CXXClasses/CXXMatrix.h
MoleculesToTriangles/CXXClasses/Callbacks.h
MoleculesToTriangles/CXXClasses/Camera.cpp
MoleculesToTriangles/CXXClasses/Camera.h
MoleculesToTriangles/CXXClasses/CameraPort.cpp
MoleculesToTriangles/CXXClasses/CameraPort.h
MoleculesToTriangles/CXXClasses/ColorNamesMap.h
MoleculesToTriangles/CXXClasses/ColorRule.cpp
MoleculesToTriangles/CXXClasses/ColorRule.h
MoleculesToTriangles/CXXClasses/ColorScheme.cpp
MoleculesToTriangles/CXXClasses/ColorScheme.h
MoleculesToTriangles/CXXClasses/CompoundSelection.cpp
MoleculesToTriangles/CXXClasses/CompoundSelection.h
MoleculesToTriangles/CXXClasses/CylinderPoint.cpp
MoleculesToTriangles/CXXClasses/CylinderPoint.h
MoleculesToTriangles/CXXClasses/CylindersPrimitive.cpp
MoleculesToTriangles/CXXClasses/CylindersPrimitive.h
MoleculesToTriangles/CXXClasses/DemoApp.cpp
MoleculesToTriangles/CXXClasses/DirectedPositionedEntity.cpp
MoleculesToTriangles/CXXClasses/DirectedPositionedEntity.h
MoleculesToTriangles/CXXClasses/DiscreteSegment.cpp
MoleculesToTriangles/CXXClasses/DiscreteSegment.h
MoleculesToTriangles/CXXClasses/DishyBase.cpp
MoleculesToTriangles/CXXClasses/DishyBase.h
MoleculesToTriangles/CXXClasses/DisplayPrimitive.cpp
MoleculesToTriangles/CXXClasses/DisplayPrimitive.h
MoleculesToTriangles/CXXClasses/ElectrostaticColorScheme.cpp
MoleculesToTriangles/CXXClasses/ElectrostaticColorScheme.hpp
MoleculesToTriangles/CXXClasses/FlatFanPrimitive.cpp
MoleculesToTriangles/CXXClasses/FlatFanPrimitive.h
MoleculesToTriangles/CXXClasses/GLIndexType.h
MoleculesToTriangles/CXXClasses/Light.cpp
MoleculesToTriangles/CXXClasses/Light.h
MoleculesToTriangles/CXXClasses/LinesPrimitive.cpp
MoleculesToTriangles/CXXClasses/LinesPrimitive.h
MoleculesToTriangles/CXXClasses/MolecularRepresentation.cpp
MoleculesToTriangles/CXXClasses/MolecularRepresentation.h
MoleculesToTriangles/CXXClasses/MolecularRepresentationInstance.cpp
MoleculesToTriangles/CXXClasses/MolecularRepresentationInstance.h
MoleculesToTriangles/CXXClasses/MyMolecule.cpp
MoleculesToTriangles/CXXClasses/MyMolecule.h
MoleculesToTriangles/CXXClasses/NRStuff.cpp
MoleculesToTriangles/CXXClasses/NRStuff.h
MoleculesToTriangles/CXXClasses/Polyhedron.cpp
MoleculesToTriangles/CXXClasses/Polyhedron.h
MoleculesToTriangles/CXXClasses/PositionedEntity.cpp
MoleculesToTriangles/CXXClasses/PositionedEntity.h
MoleculesToTriangles/CXXClasses/Renderer.cpp
MoleculesToTriangles/CXXClasses/Renderer.h
MoleculesToTriangles/CXXClasses/RendererGL.cpp
MoleculesToTriangles/CXXClasses/RendererGL.h
MoleculesToTriangles/CXXClasses/RendererGLSL.cpp
MoleculesToTriangles/CXXClasses/RendererGLSL.hpp
MoleculesToTriangles/CXXClasses/Representation.cpp
MoleculesToTriangles/CXXClasses/Representation.h
MoleculesToTriangles/CXXClasses/RepresentationInstance.cpp
MoleculesToTriangles/CXXClasses/RepresentationInstance.h
MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.cpp
MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h
MoleculesToTriangles/CXXClasses/SceneSetup.cpp
MoleculesToTriangles/CXXClasses/SceneSetup.h
MoleculesToTriangles/CXXClasses/SecondaryColorScheme.cpp
MoleculesToTriangles/CXXClasses/SecondaryColorScheme.h
MoleculesToTriangles/CXXClasses/SolidColorRule.cpp
MoleculesToTriangles/CXXClasses/SolidColorRule.h
MoleculesToTriangles/CXXClasses/SpherePrimitive.cpp
MoleculesToTriangles/CXXClasses/SpherePrimitive.h
MoleculesToTriangles/CXXClasses/SticksPrimitive.cpp
MoleculesToTriangles/CXXClasses/SticksPrimitive.h
MoleculesToTriangles/CXXClasses/SurfacePrimitive.cpp
MoleculesToTriangles/CXXClasses/SurfacePrimitive.h
MoleculesToTriangles/CXXClasses/VertexColorNormalPrimitive.cpp
MoleculesToTriangles/CXXClasses/VertexColorNormalPrimitive.h
MoleculesToTriangles/CXXClasses/lfit.h
MoleculesToTriangles/CXXClasses/oglPolyhedron.cpp
MoleculesToTriangles/CXXClasses/oglPolyhedron.h
MoleculesToTriangles/CXXSurface/CXXAlloc.h
MoleculesToTriangles/CXXSurface/CXXBall.cpp
MoleculesToTriangles/CXXSurface/CXXBall.h
MoleculesToTriangles/CXXSurface/CXXChargeTable.cpp
MoleculesToTriangles/CXXSurface/CXXChargeTable.h
MoleculesToTriangles/CXXSurface/CXXCircle.cpp
MoleculesToTriangles/CXXSurface/CXXCircle.h
MoleculesToTriangles/CXXSurface/CXXCircleNode.cpp
MoleculesToTriangles/CXXSurface/CXXCircleNode.h
MoleculesToTriangles/CXXSurface/CXXCoord.cpp
MoleculesToTriangles/CXXSurface/CXXCoord.h
MoleculesToTriangles/CXXSurface/CXXCreator.cpp
MoleculesToTriangles/CXXSurface/CXXCreator.h
MoleculesToTriangles/CXXSurface/CXXException.cpp
MoleculesToTriangles/CXXSurface/CXXException.h
MoleculesToTriangles/CXXSurface/CXXFFTSolventMap.h
MoleculesToTriangles/CXXSurface/CXXFortranFile.cpp
MoleculesToTriangles/CXXSurface/CXXFortranFile.h
MoleculesToTriangles/CXXSurface/CXXMatrix4x4.h
MoleculesToTriangles/CXXSurface/CXXNewHood.cpp
MoleculesToTriangles/CXXSurface/CXXNewHood.h
MoleculesToTriangles/CXXSurface/CXXPointyBit.h
MoleculesToTriangles/CXXSurface/CXXQADSurface.cpp
MoleculesToTriangles/CXXSurface/CXXQADSurface.h
MoleculesToTriangles/CXXSurface/CXXQADSurfaceStaticData.cpp
MoleculesToTriangles/CXXSurface/CXXSpace.cpp
MoleculesToTriangles/CXXSurface/CXXSpace.h
MoleculesToTriangles/CXXSurface/CXXSphereElement.cpp
MoleculesToTriangles/CXXSurface/CXXSphereElement.h
MoleculesToTriangles/CXXSurface/CXXSphereFlatTriangle.h
MoleculesToTriangles/CXXSurface/CXXSphereNode.cpp
MoleculesToTriangles/CXXSurface/CXXSphereNode.h
MoleculesToTriangles/CXXSurface/CXXSphereTriangle.cpp
MoleculesToTriangles/CXXSurface/CXXSphereTriangle.h
MoleculesToTriangles/CXXSurface/CXXSphereTriangleEdge.cpp
MoleculesToTriangles/CXXSurface/CXXSphereTriangleEdge.h
MoleculesToTriangles/CXXSurface/CXXSurface.cpp
MoleculesToTriangles/CXXSurface/CXXSurface.h
MoleculesToTriangles/CXXSurface/CXXSurfaceMaker.cpp
MoleculesToTriangles/CXXSurface/CXXSurfaceMaker.h
MoleculesToTriangles/CXXSurface/CXXSurfaceVertex.cpp
MoleculesToTriangles/CXXSurface/CXXSurfaceVertex.h
MoleculesToTriangles/CXXSurface/CXXTorusElement.cpp
MoleculesToTriangles/CXXSurface/CXXTorusElement.h
MoleculesToTriangles/CXXSurface/CXXTorusNode.cpp
MoleculesToTriangles/CXXSurface/CXXTorusNode.h
MoleculesToTriangles/CXXSurface/CXXTorusTriangle.h.h
MoleculesToTriangles/CXXSurface/CXXTriangle.cpp
MoleculesToTriangles/CXXSurface/CXXTriangle.h
MoleculesToTriangles/CXXSurface/CXXUtils.cpp
MoleculesToTriangles/CXXSurface/CXXUtils.h
MoleculesToTriangles/CXXSurface/CXXVCN.cpp
MoleculesToTriangles/CXXSurface/CXXVCN.h
MoleculesToTriangles/CXXSurface/TokenIterator.h
Copyright: 2009, Martin Noble, University of Oxford
2010, Martin Noble, University of Oxford
2011, Martin Noble, University of Oxford
2012, Martin Noble, University of Oxford
2016, Martin Noble, University of Oxford
2017, Martin Noble, University of Oxford
License: LGPL-3+
Files: ccp4mg-utils/mgtree.cc
ccp4mg-utils/mgtree.h
ccp4mg-utils/mmut/mman_base.cc
ccp4mg-utils/mmut/mman_base.h
ccp4mg-utils/mmut/mman_manager.cc
ccp4mg-utils/mmut/mman_manager.h
ccp4mg-utils/mmut/mmut_basepairs.cc
ccp4mg-utils/mmut/mmut_basepairs.h
ccp4mg-utils/mmut/mmut_bonds.cc
ccp4mg-utils/mmut/mmut_bonds.h
ccp4mg-utils/mmut/mmut_colour.cc
ccp4mg-utils/mmut/mmut_colour.h
ccp4mg-utils/mmut/mmut_connectivity.cc
ccp4mg-utils/mmut/mmut_connectivity.h
ccp4mg-utils/mmut/mmut_contact.cc
ccp4mg-utils/mmut/mmut_contact.h
ccp4mg-utils/mmut/mmut_hbond.cc
ccp4mg-utils/mmut/mmut_hbond.h
ccp4mg-utils/mmut/mmut_lipids.h
ccp4mg-utils/mmut/mmut_manager.cc
ccp4mg-utils/mmut/mmut_manager.h
ccp4mg-utils/mmut/mmut_morph.h
ccp4mg-utils/mmut/mmut_nma.cc
ccp4mg-utils/mmut/mmut_nma.h
ccp4mg-utils/mmut/mmut_sasarea.cc
ccp4mg-utils/mmut/mmut_sasarea.h
ccp4mg-utils/mmut/mmut_sbase.cc
ccp4mg-utils/mmut/mmut_sbase.h
ccp4mg-utils/mmut/mmut_secstr.cc
ccp4mg-utils/mmut/mmut_secstr.h
ccp4mg-utils/mmut/mmut_spline.cc
ccp4mg-utils/mmut/mmut_util.cc
ccp4mg-utils/mmut/mmut_util.h
ccp4mg-utils/mmut/splineinfo.h
ccp4mg-utils/pygl/atom_util.cc
ccp4mg-utils/pygl/atom_util.h
ccp4mg-utils/pygl/bezier.cc
ccp4mg-utils/pygl/billboard.cc
ccp4mg-utils/pygl/build_tree_primitives.cc
ccp4mg-utils/pygl/catmull.cc
ccp4mg-utils/pygl/catmull.h
ccp4mg-utils/pygl/cbuild.h
ccp4mg-utils/pygl/cdisplayobject.cc
ccp4mg-utils/pygl/cdisplayobject.h
ccp4mg-utils/pygl/cprimitive.cc
ccp4mg-utils/pygl/cprimitive.h
ccp4mg-utils/pygl/font_info.cc
ccp4mg-utils/pygl/font_info.h
ccp4mg-utils/pygl/font_util.cc
ccp4mg-utils/pygl/font_util.h
ccp4mg-utils/pygl/freetype_font.cc
ccp4mg-utils/pygl/freetype_font.h
ccp4mg-utils/pygl/help.cc
ccp4mg-utils/pygl/help.h
ccp4mg-utils/pygl/lincrv.h
ccp4mg-utils/pygl/psutil.cc
ccp4mg-utils/pygl/psutil.h
ccp4mg-utils/pygl/rgbreps.cc
ccp4mg-utils/pygl/rgbreps.h
ccp4mg-utils/pygl/sphere.cc
ccp4mg-utils/pygl/sphere.h
ccp4mg-utils/pygl/sphere_1.h
ccp4mg-utils/pygl/sphere_2.h
ccp4mg-utils/pygl/sphere_3.h
ccp4mg-utils/pygl/splineset.cc
ccp4mg-utils/pygl/subdivide.cc
ccp4mg-utils/pygl/subdivide.h
ccp4mg-utils/pygl/symmetry.cc
ccp4mg-utils/pygl/symmetry.h
ccp4mg-utils/pygl/text.cc
ccp4mg-utils/pygl/texture.cc
ccp4mg-utils/pygl/texture.h
ccp4mg-utils/pygl/win_font.cc
ccp4mg-utils/pygl/win_font.h
ccp4mg-utils/pygl/x11_font.cc
ccp4mg-utils/pygl/x11_font.h
ccp4mg-utils/pygl/zsortps.cc
ccp4mg-utils/util/CParamsManager.cc
ccp4mg-utils/util/CParamsManager.h
ccp4mg-utils/util/cartesian.cc
ccp4mg-utils/util/cartesian.h
ccp4mg-utils/util/connect.cc
ccp4mg-utils/util/connect.h
ccp4mg-utils/util/geomutil.cc
ccp4mg-utils/util/geomutil.h
ccp4mg-utils/util/matrix.cc
ccp4mg-utils/util/matrix.h
ccp4mg-utils/util/mginterrupt.cc
ccp4mg-utils/util/mginterrupt.h
ccp4mg-utils/util/mgtree.cc
ccp4mg-utils/util/mgtree.h
ccp4mg-utils/util/mgutil.cc
ccp4mg-utils/util/mgutil.h
ccp4mg-utils/util/plane.cc
ccp4mg-utils/util/plane.h
ccp4mg-utils/util/quat.cc
ccp4mg-utils/util/quat.h
ccp4mg-utils/util/redirect.cc
ccp4mg-utils/util/volume.cc
ccp4mg-utils/util/volume.h
Copyright: 2001-2008, University of York, CCLRC
License: LGPL-3
Files: api/filo-tests.cc
api/filo-tests.hh
coot-utils/coot-h-bonds.hh
coot-utils/coot-hole.hh
coot-utils/coot-lsq-types.h
coot-utils/elastic.cc
coot-utils/elastic.hh
coot-utils/helix-analysis.cc
coot-utils/helix-analysis.hh
coot-utils/read-sm-cif.hh
coot-utils/test-elastic.cc
coot-utils/test-h-bonds.cc
coot-utils/test-hole.cc
coot-utils/test-morph.cc
coot-utils/xmap-stats.hh
geometry/lbg-graph.cc
geometry/lbg-graph.cc-m
geometry/lbg-graph.hh
geometry/test-read-components.cc
ligand/chi-angles-autogen.cc
ligand/primitive-chi-angles.cc
ligand/primitive-chi-angles.hh
ligand/read-dunbrack.awk
ligand/richardson-rotamer.cc
ligand/richardson-rotamers.cc
skeleton/BuildCas.h
skeleton/dm-utils.cc
skeleton/graphical_skel.cc
skeleton/graphical_skel.h
src/add-c-extern.sh
src/blank.cc
src/c-inner-main.h
src/c-interface-ligands-swig.hh
src/c-interface-wii.cc
src/canvas-fixes.hh
src/cc-interface-mogul.hh
src/cmtz-interface.hh
src/command-arg.hh
src/command-line.hh
src/coot-align.cc
src/coot-align.hh
src/coot-colour.hh
src/coot-database.hh
src/coot-fileselections.h
src/coot-glue.hh
src/coot-hydrogens.cc
src/coot-hydrogens.hh
src/coot-nomenclature.hh
src/coot-preferences.h
src/coot-references.h
src/coot-render.hh
src/coot.i
src/fix-nomenclature.cc
src/flev.hh
src/get-residue.cc
src/get-residue.hh
src/gl-bits.hh
src/gl-matrix.cc
src/graphics-info-network.cc
src/graphics-info-scripting.cc
src/gtk-manual.hh
src/gtk-widget-conversion-utils.cc
src/gtk-widget-conversion-utils.h
src/guile-fixups.h
src/history_list.hh
src/interface.c
src/interface.h
src/lbg-callbacks-outer.cc
src/lbg-interface.hh
src/mmcif-sfs-to-mtz-main.cc
src/molecule-class-info-dots.cc
src/molecule-class-info.h
src/named-rotamer-score.hh
src/pisa-interface.hh
src/post-glade
src/post-gtk2-glade.sh
src/protein_db-interface.cc
src/protein_db-interface.hh
src/restraints-editor-c.h
src/rotate-translate-modes.hh
src/sdf-interface.hh
src/sdf-internal.hh
src/select-atom-info.hh
src/seq-view-interface.c
src/seq-view-interface.h
src/support-gtk2-extras.c
src/support.c
src/test-chol.cc
src/test-lbg-graph.cc
src/testing-scm.cc
src/testing-scm.hh
src/triangle-extras.h
src/user-mods.cc
src/user-mods.hh
src/xmap-utils.cc
src/xmap-utils.h
Copyright: 2007, University of York
2008, University of York
2009, University of York
2010, University of York
2011, University of York
2012, University of York
2023, University of York
License: LGPL-3+
Files: build/CalphaBuild.cc
build/CalphaBuild.hh
build/testcabuild.cc
coords/Bond_lines_ext.cc
coords/Cartesian.cc
coords/Cartesian.h
coords/Makefile.am
coords/coot-close.cc
coords/coot-close.hh
coords/cos-sin.cc
coords/cos-sin.h
coords/mmdb-crystal.cc
coords/mmdb-crystal.h
coords/mmdb-extras.cc
coords/mmdb-extras.h
coords/mmdb.hh
coords/utils.cc
coords/utils.h
density-contour/density-contour-triangles.cc
density-contour/density-contour-triangles.hh
geometry/Makefile.am
geometry/Makefile.simple
ideal/Makefile.am
ideal/lograma.cpp
ideal/lograma.h
ideal/logramatest.cpp
ideal/molmantest.cc
ideal/pepflip.hh
ideal/regularize-minimol.cc
ideal/regularize-minimol.hh
ideal/test-indexing.cc
ideal/test-indexing.hh
ideal/with-geometry.cc
pyrogen/pyrogen-swig.i
skeleton/dm-utils.h
src/align.cc
src/c-inner-main.c
src/c-interface-gtk2.cc
src/c-interface-mmdb.hh
src/c-interface-python.cc
src/c-interface-python.hh
src/coot_pythonmodule.cc
src/density-score-by-residue-src.cc
src/geometry-graphs.cc
src/geometry-graphs.hh
src/gl-matrix.h
src/graphics-info-lsq.cc
src/graphics-info-pick.cc
src/graphics-info-preferences.cc
src/graphics-info-superpose.cc
src/molecule-class-info-kdc.cc
src/molecule-class-info-ribbons.cc
src/molecule-class-info-surface.cc
src/molecule-class-info-widget-work.cc
src/pick.cc
src/positioned-widgets.h
src/rama_mousey.cc
src/read-phs.h
src/sequence-view.cc
src/sequence-view.hh
utils/Makefile.am
utils/atomic-numbers.cc
utils/coot-fasta.hh
utils/coot-utils.hh
Copyright: 2001-2003, 2006, The University of York
2001-2006, The University of York
2001-2007, The University of York
2002, The University of York
2002-2003, The University of York
2002-2004, The University of York
2002-2005, The University of York
2002-2006, The University of York
2002-2007, The University of York
2004, 2006, The University of York
2004, The University of York
2004-2005, The University of York
2004-2006, The University of York
2005, The University of York
2005-2006, The University of York
2006, The University of York
2007, The University of York
2008, The University of York
2011, The University of York
2014, The University of York
2020, The University of York
License: LGPL-3+
Files: analysis/fraction_stats.py
analysis/mogul.cc
analysis/peptide-projection.cc
analysis/stats.cc
analysis/stats.hh
api/Makefile.am
api/coot-colour.cc
canyon/canyon-points.scm
canyon/canyon.cc
canyon/canyon.hh
canyon/quaternion.cc
coot-utils/atom-overlaps.cc
coot-utils/atom-overlaps.hh
coot-utils/coot-density-stats.hh
coot-utils/dictionary-atom-types.cc
coot-utils/slurp-map.cc
coot-utils/slurp-map.hh
coot-utils/test-chem-feat.cc
coot-utils/test-cod-atom-types.cc
coot-utils/test-spherical.cc
lidia-core/bond-record-container-t.cc
lidia-core/bond-record-container-t.hh
lidia-core/bond-table-record-t.cc
lidia-core/bond-table-record-t.hh
lidia-core/cod-atom-type-t.cc
lidia-core/cod-atom-type-t.hh
lidia-core/cod-atom-types.cc
lidia-core/cod-atom-types.hh
lidia-core/cod-types.cc
lidia-core/cod-types.hh
lidia-core/primes.hh
lidia-core/test-fei-vs-mine.py
ligand/ligand-percentiles.cc
ligand/ligands-db.cc
ligand/ligands-db.hh
ligand/make-ligands-db.cc
ligand/smith-waterman.cc
ligand/test-trace.cc
ligand/trace-2.cc
ligand/trace.cc
ligand/trace.hh
man/coot-compare-dictionaries.man
man/coot-mini-rsr.man
man/coot.man
man/findligand.man
man/findwaters.man
pli/Makefile.am
pli/pi-stacking.hh
pyrogen/mmff-restraints.cc
pyrogen/mmff-restraints.hh
python/coot_chemical_feature_clusters.py
python/ligand_validation_sliders.py
scheme/3d-generator-import.scm
scheme/contact-score-isolated-ligand.scm
scheme/dictionary-generators.scm
scheme/enhanced-ligand.scm
scheme/gui-add-linked-cho.scm
scheme/gui-hole.scm
scheme/gui-ligand-sliders.scm
scheme/gui-prosmart.scm
scheme/ligand-check.scm
scheme/run-mogul.scm
Copyright: 2010, Medical Research Council
2012-2014, Medical Research Council
2013, Medical Research Council
2014, Medical Research Council
2014-2015, Medical Research Council
2015, Medical Research Council
2016, Medical Research Council
2017, Medical Research Council
2018, Medical Research Council
2019, Medical Research Council
2020, Medical Research Council
2021, Medical Research Council
License: GPL-3+
Files: Makefile.am
analysis/Makefile.am
autogen.sh
build/Makefile.am
compat/coot-sysdep.h
coot-utils/atom-selection-container.cc
coot-utils/atom-selection-container.hh
coot-utils/coot-coord-utils-glyco.cc
coot-utils/coot-map-heavy.hh
coot-utils/coot-shelx.hh
coot-utils/coot-trim.hh
coot-utils/peak-search.hh
db-main/db-main.cc
db-main/db-main.hh
db-main/db-strands.cc
db-main/db-strands.hh
db-main/testdbmain.cc
density-contour/Makefile.am
high-res/Makefile.am
high-res/coot-atom-graph.hh
high-res/coot-node-info.hh
high-res/globularize.cc
high-res/trace-high-res.cc
ligand/chi-angles.cc
ligand/chi-angles.hh
ligand/dunbrack.cc
ligand/dunbrack.hh
ligand/fast-ss-search.hh
ligand/find-waters.cc
ligand/helix-placement.cc
ligand/helix-placement.hh
ligand/monomer-utils.cc
ligand/monomer-utils.hh
ligand/test-fffear-in-coot.cc
ligand/test-helix-placement.cc
ligand/test-random.cc
ligand/wligand.hh
macros/Makefile.am
macros/clipper.m4
macros/coot-database.m4
macros/coot-windows.m4
macros/glut.m4
macros/guile-gtk.m4
macros/with-guile.m4
mini-mol/Makefile.am
mini-mol/atom-quads.cc
mini-mol/mini-mol-utils.cc
mini-mol/mini-mol-utils.hh
mini-mol/mini-mol.hh
mini-mol/testminimol.cc
scheme/coot-lsq.scm
scheme/fitting.scm
scheme/group-settings.scm
scheme/refmac.scm
scheme/tips-gui.scm
setup/coot.csh.in
setup/coot.sh.in
shell-utils/shell-copyright-template.sh
skeleton/BuildCas.cc
skeleton/Makefile.am
Copyright: 2001-2003, 2006, The University of York
2001-2003, The University of York
2001-2004, 2006, The University of York
2001-2007, The University of York
2002, The University of York
2002-2003, 2006, The University of York
2002-2004, The University of York
2002-2005, The University of York
2002-2006, The University of York
2003, The University of York
2003-2004, 2006-2007, The University of York
2003-2004, The University of York
2004, 2006, The University of York
2004, The University of York
2004-2005, The University of York
2004-2006, The University of York
2004-2007, The University of York
2005, The University of York
2005-2006, The University of York
2005-2007, The University of York
2006, The University of York
2007, The University of York
2008, The University of York
2009, The University of York
2011, The University of York
License: GPL-3+
Files: rcrane/__init__.py
rcrane/about.py
rcrane/bondLength.py
rcrane/buildInitSugar.py
rcrane/buildPhosOxy.py
rcrane/calcCoords.py
rcrane/chain.py
rcrane/citationPopup.py
rcrane/coot_gui_adapter.py
rcrane/coot_utils_adapter.py
rcrane/extendChain.py
rcrane/guiUtils.py
rcrane/installRCrane.py
rcrane/launch.py
rcrane/linearInterp.py
rcrane/menu.py
rcrane/nextPhos.py
rcrane/nucleotide.py
rcrane/phenixRestraints.py
rcrane/preLaunchCheck.py
rcrane/pseudoMolecule.py
rcrane/pseudoPredictor.py
rcrane/puckerList.py
rcrane/reportInputErrors.py
rcrane/reviewSuitesGui.py
rcrane/rotData.py
rcrane/rotamerSeq.py
rcrane/rotamerize.py
rcrane/safelog.py
rcrane/selectMapDialog.py
rcrane/settings.py
rcrane/smoothProb.py
rcrane/stats.py
rcrane/strucCalc.py
rcrane/suite.py
rcrane/thetaEtaPredictor.py
rcrane/traceGui.py
Copyright: 2010, Kevin Keating
2010-2011, 2102, Kevin Keating
2010-2011, Kevin Keating
2010-2012, Kevin Keating
2011, Kevin Keating
2011-2012, Kevin Keating
2012, Kevin Keating
License: ECL-2.0
Files: geometry/cif-parse-link.cc
geometry/cif-parse.cc
geometry/dictionary-residue.cc
geometry/glyco-tools.cc
geometry/link.cc
geometry/protein-geometry.cc
geometry/protein-geometry.hh
ideal/chi-squareds.cc
ideal/chirals.cc
ideal/distortion.cc
ideal/flanking.cc
ideal/gradients.cc
ideal/link-restraints.cc
ideal/make-restraints.cc
ideal/mini-rsr.cc
ideal/mods.cc
ideal/simple-restraint.cc
ideal/simple-restraint.hh
src/Makefile.am
src/c-interface-gui.cc
src/c-interface-ligands-gui.cc
src/c-interface-ligands.cc
src/c-interface-maps.cc
src/c-interface-ncs.cc
src/c-interface-preferences.cc
src/c-interface-waters-gui.cc
src/c-interface-waters.cc
src/generic-objects.cc
src/glade-callbacks-main-window.cc
src/glade-callbacks-preferences.cc
src/glade-callbacks-shader-settings.cc
src/glade-callbacks.cc
src/graphics-info-graphs.cc
src/main.cc
src/molecule-class-info-ncs.cc
src/molecule-class-info-other.cc
Copyright: 2001-2007, The University of York
2002-2003, The University of York
2002-2005, The University of York
2002-2006, The University of York
2002-2007, The University of York
2003-2004, 2007, The University of York
2003-2006, The University of York
2004-2005, The University of York
2004-2007, The University of York
2005-2006, The University of York
2007, 2009, 2011-2012, The University of Oxford
2007, 2012, The University of Oxford
2007, The University of Oxford
2007, The University of York
2007-2008, The University of Oxford
2007-2009, The University of Oxford
2007-2012, The University of Oxford
2008, 2010, The University of Oxford
2008, The University of Oxford
2008-2009, 2011-2012, The University of Oxford
2008-2009, The University of Oxford
2008-2010, The University of Oxford
2008-2012, The University of Oxford
2009, The University of Oxford
2012-2015, Medical Research Council
2013, 2015-2016, Medical Research Council
2013, Medical Research Council
2013-2014, Medical Research Council
2013-2015, 2018, 2020-2021, Medical Research Council
2013-2015, Medical Research Council
2013-2016, Medical Research Council
2014, Medical Research Council
2014-2015, Medical Research Council
2014-2016, Medical Research Council
2015-2016, Medical Research Council
2016, Medical Research Council
License: LGPL-3+
Files: coot-utils/voidp-buffer.hh
layla/generators.cpp
layla/generators.hpp
layla/layla_embedded.cpp
layla/layla_embedded.hpp
layla/ligand_editor_canvas.cpp
layla/ligand_editor_canvas.hpp
layla/ligand_editor_canvas/core.cpp
layla/ligand_editor_canvas/core.hpp
layla/ligand_editor_canvas/model.cpp
layla/ligand_editor_canvas/model.hpp
layla/ligand_editor_canvas/render.cpp
layla/ligand_editor_canvas/render.hpp
layla/ligand_editor_canvas/tools.cpp
layla/ligand_editor_canvas/tools.hpp
layla/main.cpp
layla/notifier.cpp
layla/notifier.hpp
layla/python_utils.cpp
layla/python_utils.hpp
layla/signals.cpp
layla/state.cpp
layla/state.hpp
layla/ui.cpp
layla/ui.hpp
layla/utils.cpp
layla/utils.hpp
lhasa/embind.cpp
lhasa/embind.hpp
lhasa/glog_replacement.cpp
lhasa/glog_replacement.hpp
lhasa/lhasa.cpp
lhasa/lhasa.hpp
Copyright: 2023, Global Phasing Ltd.
License: GPL-3+
Files: cootaneer/buccaneer-lib.cpp
cootaneer/buccaneer-lib.h
cootaneer/buccaneer-prot.cpp
cootaneer/buccaneer-prot.h
cootaneer/buccaneer-sequence.cpp
cootaneer/buccaneer-sequence.h
cootaneer/cootaneer-demo.cpp
cootaneer/cootaneer-sequence.cpp
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protein_db/rna_db.h
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| |
| control file for coot-data_1.1.07.705.gb7e2c16a2+dfsg-1_all.deb (click to toggle) | |
|---|---|
| Package: | coot-data |
| Source: | coot |
| Version: | 1.1.07.705.gb7e2c16a2+dfsg-1 |
| Architecture: | all |
| Maintainer: | Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org> |
| Installed-Size: | 63670 |
| Depends: | fonts-noto-core, ttf-bitstream-vera |
| Section: | science |
| Priority: | optional |
| Homepage: | https://github.com/pemsley/coot |
| Description: | various data files needed by Coot This is an interactive program for fitting atomic models to crystallographic electron density maps. This package contains various data files needed by Coot. |
| contents of coot-data_1.1.07.705.gb7e2c16a2+dfsg-1_all.deb (click to toggle) | |
|---|---|
drwxr-xr-x root/root 0 2024-04-05 12:10 ./ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/share/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/share/coot/ -rw-r--r-- root/root 2916 2024-04-05 12:10 ./usr/share/coot/ASN-NAG-via-NAG-ASN.pdb -rw-r--r-- root/root 460 2024-04-05 12:10 ./usr/share/coot/BMA-decorations.tab -rw-r--r-- root/root 361 2024-04-05 12:10 ./usr/share/coot/FUC-decorations.tab -rw-r--r-- root/root 361 2024-04-05 12:10 ./usr/share/coot/FUL-decorations.tab -rw-r--r-- root/root 460 2024-04-05 12:10 ./usr/share/coot/GAL-decorations.tab -rw-r--r-- root/root 460 2024-04-05 12:10 ./usr/share/coot/GLC-decorations.tab -rw-r--r-- root/root 460 2024-04-05 12:10 ./usr/share/coot/MAN-decorations.tab -rw-r--r-- root/root 736 2024-04-05 12:10 ./usr/share/coot/NAG-decorations.tab -rw-r--r-- root/root 2515 2024-04-05 12:10 ./usr/share/coot/SIA-pyranose-via-ALPHA2-3.pdb -rw-r--r-- root/root 272 2024-04-05 12:10 ./usr/share/coot/XYP-decorations.tab -rw-r--r-- root/root 240456 2024-04-05 12:10 ./usr/share/coot/cootaneer-llk-2.40.dat drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/share/coot/data/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/share/coot/data/assign-side-chains/ drwxr-xr-x root/root 0 2021-01-23 20:29 ./usr/share/coot/data/assign-side-chains/side-chain-data/ drwxr-xr-x root/root 0 2021-01-23 20:29 ./usr/share/coot/data/assign-side-chains/side-chain-data/ALA/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/share/coot/data/assign-side-chains/side-chain-data/ALA/none/ -rw-r--r-- root/root 10317 2019-11-22 15:53 ./usr/share/coot/data/assign-side-chains/side-chain-data/ALA/none/stats.table -rw-r--r-- root/root 25 2019-11-22 15:53 ./usr/share/coot/data/assign-side-chains/side-chain-data/ALA/none/summary-stats drwxr-xr-x root/root 0 2021-01-23 20:29 ./usr/share/coot/data/assign-side-chains/side-chain-data/ARG/ drwxr-xr-x root/root 0 2024-04-05 12:10 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NOTE: Copyright is the same as coot (coot_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.deb). Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: Coot
Upstream-Contact: https://github.com/pemsley/coot/issues
Source: https://github.com/pemsley/coot
Files-Excluded:
fonts
Files: *
Copyright: 2001-2007, The University of York
2007-2012, The University of Oxford
2012-2016, Medical Research Council
1999-2024, Paul Emsley
License: GPL-3+
Files: analysis/b-factor-histogram.cc
analysis/coot-daca.cc
analysis/daca.cc
analysis/daca.hh
analysis/improper-dihedrals.cc
analysis/mogul-interface.hh
analysis/rna-backbone.cc
analysis/rna-backbone.hh
analysis/test-align.cc
analysis/test-cablam.cc
analysis/test-mogul.cc
analysis/test-rna-backbone.cc
analysis/test-stats.cc
analysis/typed-distances.cc
analysis/typed-distances.hh
api/add-terminal-residue.cc
api/add-terminal-residue.hh
api/api-cell.hh
api/atom-pull.hh
api/blender-mesh.cc
api/blender-mesh.hh
api/bond-colour.hh
api/cell.hh
api/clipper-ccp4-map-file-wrapper.hh
api/colour-functions.cc
api/colour-functions.hh
api/coot-colour.hh
api/coot-molecule-backup.cc
api/coot-molecule-blender.cc
api/coot-molecule-bonds-instanced.cc
api/coot-molecule-bonds.hh
api/coot-molecule-change-chain-id.cc
api/coot-molecule-maps.cc
api/coot-molecule-merge-molecules.cc
api/coot-molecule-moltris.cc
api/coot-molecule-refine.cc
api/coot-molecule-replace-fragment.cc
api/coot-molecule-validation.cc
api/coot-molecule.cc
api/coot-molecule.hh
coords/graphical-bonds-container.hh
coords/graphics-line.hh
coords/loop-path.cc
coords/loop-path.hh
coords/phenix-geo-bonds.cc
coords/phenix-geo.cc
coords/phenix-geo.hh
coords/phi-psi-prob.cc
coords/phi-psi-prob.hh
coords/rama-plot-phi-psi.cc
coords/rama-plot-phi-psi.hh
coords/ramachandran-container.hh
coords/ramachandran-validation.cc
coords/ramachandran-validation.hh
coords/rotamer-container.hh
coords/rotamer-markup.cc
coords/test-phenix-geo.cc
coords/test-transform.cc
coords/torus-description.hh
coot-utils/3d-texture.cc
coot-utils/3d-texture.hh
coot-utils/amp-reso.hh
coot-utils/arc-info.hh
coot-utils/atom-tools.cc
coot-utils/atom-tools.hh
coot-utils/atom-tree.hh
coot-utils/atom-vertex.hh
coot-utils/blob-line.cc
coot-utils/blob-line.hh
coot-utils/bonded-atoms.cc
coot-utils/bonded-atoms.hh
coot-utils/bricks.cc
coot-utils/c-beta-deviations.cc
coot-utils/c-beta-deviations.hh
coot-utils/cablam-markup.cc
coot-utils/cablam-markup.hh
coot-utils/cis-peptide-info.hh
coot-utils/cmtz-interface.cc
coot-utils/cmtz-interface.hh
coot-utils/cod-db-access.cc
coot-utils/contact-info.cc
coot-utils/contact-info.hh
coot-utils/contacts-by-bricks.cc
coot-utils/contacts-by-bricks.hh
coot-utils/coot-least-squares.hh
coot-utils/cylinder-with-rotation-translation.cc
coot-utils/cylinder-with-rotation-translation.hh
coot-utils/cylinder.cc
coot-utils/cylinder.hh
coot-utils/diff-diff-map-peaks.cc
coot-utils/diff-diff-map-peaks.hh
coot-utils/emma.hh
coot-utils/exp-fit.cc
coot-utils/exp-fit.hh
coot-utils/fast-eigens.cc
coot-utils/fast-eigens.hh
coot-utils/fib-sphere.cc
coot-utils/fib-sphere.hh
coot-utils/find-pepflip-using-difference-map.cc
coot-utils/find-pepflip-using-difference-map.hh
coot-utils/find-water-baddies.cc
coot-utils/find-water-baddies.hh
coot-utils/fragment-container.cc
coot-utils/fragment-container.hh
coot-utils/g_triangle.hh
coot-utils/gltf-export.cc
coot-utils/glyco-tree.hh
coot-utils/helix-like.cc
coot-utils/helix-like.hh
coot-utils/jed-flip.cc
coot-utils/jed-flip.hh
coot-utils/lidia-core-functions.cc
coot-utils/lidia-core-functions.hh
coot-utils/make-cablam-like-stats.cc
coot-utils/map-index.hh
coot-utils/merge-C-and-N-terminii.cc
coot-utils/merge-C-and-N-terminii.hh
coot-utils/merge-atom-selections.cc
coot-utils/merge-atom-selections.hh
coot-utils/merge-molecules.cc
coot-utils/merge-molecules.hh
coot-utils/mmrrcc.cc
coot-utils/mtz-column-auto-read.hh
coot-utils/mutate.cc
coot-utils/oct.cc
coot-utils/oct.hh
coot-utils/parse-pisa.cc
coot-utils/parse-pisa.hh
coot-utils/pepflip-using-difference-map.cc
coot-utils/pepflip-using-difference-map.hh
coot-utils/plane-utils.cc
coot-utils/plane-utils.hh
coot-utils/polar-atoms.cc
coot-utils/polar-atoms.hh
coot-utils/positron.cc
coot-utils/positron.hh
coot-utils/prideout-octasphere.hh
coot-utils/reduce.cc
coot-utils/reduce.hh
coot-utils/secondary-structure-headers.cc
coot-utils/secondary-structure-headers.hh
coot-utils/segmap.cc
coot-utils/segmap.hh
coot-utils/sfcalc-genmap.hh
coot-utils/shape-types.hh
coot-utils/shapes.cc
coot-utils/shapes.hh
coot-utils/simple-mesh.cc
coot-utils/simple-mesh.hh
coot-utils/spherical-harmonics.cc
coot-utils/spherical-harmonics.hh
coot-utils/stack-and-pair.cc
coot-utils/stack-and-pair.hh
coot-utils/strand-fragments.cc
coot-utils/strand-fragments.hh
coot-utils/strand-like.hh
coot-utils/test-5-residue-fragments.cc
coot-utils/test-cod-atom-types-from-sm-cif.cc
coot-utils/test-convolute.cc
coot-utils/test-coot-probe.cc
coot-utils/test-diff-diff-map-peaks.cc
coot-utils/test-emma.cc
coot-utils/test-parse-pisa.cc
coot-utils/test-segmap.cc
coot-utils/vertex.hh
density-contour/gaussian-surface.cc
density-contour/gaussian-surface.hh
density-contour/occlusion.cc
density-contour/occlusion.hh
density-contour/test-gaussian-surface.cc
density-contour/test-occlusion.cc
density-contour/transfer-occlusions.hh
geometry/bonded-quad.hh
geometry/chem_mods.hh
geometry/cif-parse-mon-lib.cc
geometry/compare-dictionaries.cc
geometry/dict-mismatches.hh
geometry/dict-utils.cc
geometry/dict-utils.hh
geometry/dictionary-bond-distributions.cc
geometry/dreiding.cc
geometry/gphl-chem-comp-info.hh
geometry/hb-types.hh
geometry/hydrophobic.cc
geometry/hydrophobic.hh
geometry/intercept-3GP.cc
geometry/main-chain.cc
geometry/main-chain.hh
geometry/make-shelx-restraints.cc
geometry/match-results.hh
geometry/mol-utils-2.cc
geometry/mol-utils-2.hh
geometry/mol-utils.cc
geometry/mol-utils.hh
geometry/pdbe-chem-comp-atom-depiction.hh
geometry/pdbx-chem-comp-description-generator.hh
geometry/protein-donor-acceptors.cc
geometry/protein-donor-acceptors.hh
geometry/read-metals-json.cc
geometry/residue-and-atom-specs.cc
geometry/srs-interface.cc
geometry/srs-interface.hh
high-res/high-res.hh
ideal/coot-compare-residues.cc
ideal/crankshaft-test.cc
ideal/crankshaft.cc
ideal/crankshaft.hh
ideal/extra-restraints.hh
ideal/lv.cc
ideal/model-bond-deltas.cc
ideal/model-bond-deltas.hh
ideal/neutron.cc
ideal/new-linked-residue-t.hh
ideal/ng.cc
ideal/parallel-planes.cc
ideal/parallel-planes.hh
ideal/phi-psi.cc
ideal/phi-psi.hh
ideal/process-dfs-in-range.cc
ideal/process-dfs-in-range.hh
ideal/pull-restraint.cc
ideal/rama-types.hh
ideal/refinement-lights.hh
ideal/refinement-results-t.hh
ideal/simulated-annealing.cc
ideal/test-rama-plot.cc
ideal/torsion-bonds.cc
ideal/torsion-bonds.hh
ideal/trans-peptide.cc
ideal/write-png.cc
ideal/write-png.hh
ideal/zo-rama.cc
ideal/zo-rama.hh
lidia-core/atom-types.cc
lidia-core/get-residue.cc
lidia-core/get-residue.hh
lidia-core/neighbour-sorter.hh
lidia-core/svg-molecule.cc
lidia-core/svg-molecule.hh
lidia-core/test-lig-build.cc
lidia-core/third-neighbour-info-t.hh
lidia-core/use-rdkit.hh
ligand/ca-torsion-info.cc
ligand/ca-torsion-info.hh
ligand/dSFMT-params19937.h
ligand/joining-residues.cc
ligand/libres-tracer.cc
ligand/libres-tracer.hh
ligand/ligand-score-card.hh
ligand/map-point-cluster.hh
ligand/multi-peptide.hh
ligand/new-residue-by-3-phi-psi.cc
ligand/new-residue-by-3-phi-psi.hh
ligand/rama-rsr-extend-fragments.cc
ligand/rama-rsr-extend-fragments.hh
ligand/refine-isolated-chain.cc
ligand/refine-isolated-chain.hh
ligand/res-tracer.cc
ligand/scored-molecule.hh
ligand/scored-node.hh
ligand/side-chain-densities.cc
ligand/side-chain-densities.hh
ligand/side-chain.cc
ligand/side-chain.hh
ligand/smith-waterman.hh
ligand/test-tube-finder.cc
ligand/tube-finder.cc
ligand/tube-finder.hh
mini-mol/mol-hierarchy.cc
pli/flev-annotations.cc
pli/protein-ligand-interactions.hh
pli/sdf-interface-for-export.hh
pli/sdf-internal.hh
pli/specs.cc
pli/specs.hh
pyrogen/cairo-molecule.cc
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src/9.ssao.shader
src/9.ssao_blur.shader
src/9.ssao_geometry.shader
src/Basic.shader
src/HUDMesh.cc
src/HUDMesh.hh
src/HUDTextureMesh.cc
src/HUDTextureMesh.hh
src/Instanced-Markup-Mesh.cc
src/Instanced-Markup-Mesh.hh
src/LigandViewMesh.cc
src/LigandViewMesh.hh
src/LinesMesh.cc
src/LinesMesh.hh
src/Material.hh
src/Mesh-from-glTF.cc
src/Mesh-from-graphical-bonds-instanced.cc
src/Mesh-from-graphical-bonds.cc
src/Mesh.cc
src/Mesh.hh
src/Model.cc
src/Model.hh
src/Particle.cc
src/Particle.hh
src/Shader.cc
src/Shader.hh
src/TemplateMesh.hh
src/Texture.cc
src/Texture.hh
src/TextureMesh.cc
src/TextureMesh.hh
src/animated-ligand.hh
src/array-2d.hh
src/atom-label-info.hh
src/atom-label.shader
src/atom-overlaps.cc
src/atom-pull.hh
src/background-image.shader
src/blur-x.shader
src/blur-y.shader
src/blur.shader
src/boids.cc
src/boids.hh
src/bond-colour-mode.hh
src/boot-python.cc
src/c-interface-bonds.cc
src/c-interface-bonds.hh
src/c-interface-curlew.cc
src/c-interface-curlew.hh
src/c-interface-geometry-distortion.hh
src/c-interface-gui.hh
src/c-interface-image.cc
src/c-interface-ligand-search.hh
src/c-interface-ligands-widgets.hh
src/c-interface-mogul-scripting.cc
src/c-interface-refine.hh
src/c-interface-sequence.cc
src/c-interface-sequence.hh
src/camera-facing-quad-shader-for-testing.shader
src/cc-interface-alignment.cc
src/cc-interface-alignment.hh
src/cc-interface-graphics.cc
src/cc-interface-graphics.hh
src/cc-interface-image.hh
src/cc-interface-map-utils.cc
src/cc-interface-merge.cc
src/cc-interface-molecular-representation.cc
src/cc-interface-molecular-representation.hh
src/cc-interface-molecular-symmetry.cc
src/cc-interface-png.cc
src/cc-interface-scripting.cc
src/cc-interface-user-defined-atom-colours.cc
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src/graphics-info-opengl.cc
src/graphics-info-refine.cc
src/graphics-info-render-scene.cc
src/graphics-info-statics.cc
src/graphics-info-tick-function.cc
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src/instanced-meshes-for-shadow-map.shader
src/instanced-meshes-for-ssao.shader
src/instanced-meshes-with-shadows.shader
src/instanced-objects.shader
src/key-bindings.cc
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src/ligand-view.shader
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src/lines-pulse.shader
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src/matrix-utils.cc
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src/rama-plot-phi-psi-markers.shader
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src/sound-mac.cc
src/sound.cc
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src/testing-2.cc
src/text-rendering-utils.cc
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utils/dodec.cc
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utils/split-indices.cc
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utils/test-utils.cc
utils/threads.cc
utils/win-compat.cc
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validation-graphs/gtk4-test-sequence-view.cc
validation-graphs/gtk4-test-validation-graph.cc
validation-graphs/residue-validation-information.cc
validation-graphs/residue-validation-information.hh
validation-graphs/validation-graphs.cc
validation-graphs/validation-graphs.hh
validation-graphs/validation-information.cc
validation-graphs/validation-information.hh
Copyright: 2007, Medical Research Council
2011, Medical Research Council
2012, Medical Research Council
2012-2014, Medical Research Council
2013, 2015, Medical Research Council
2013, Medical Research Council
2014, Medical Research Council
2014-2015, Medical Research Council
2015, Medical Research Council
2016, Medical Research Council
2017, Medical Research Council
2018, Medical Research Council
2019, Medical Research Council
2020, Medical Research Council
2021, Medical Research Council
2022, Medical Research Council
2023, Medical Research Council
2024, Medical Research Council
License: LGPL-3+
Files: MoleculesToTriangles/CXXClasses/AtomPropertyRampColorRule.cpp
MoleculesToTriangles/CXXClasses/AtomPropertyRampColorRule.h
MoleculesToTriangles/CXXClasses/BallsPrimitive.cpp
MoleculesToTriangles/CXXClasses/BallsPrimitive.h
MoleculesToTriangles/CXXClasses/BondsPrimitive.cpp
MoleculesToTriangles/CXXClasses/BondsPrimitive.h
MoleculesToTriangles/CXXClasses/BoostWrappers.cpp
MoleculesToTriangles/CXXClasses/BoxSectionPrimitive.cpp
MoleculesToTriangles/CXXClasses/BoxSectionPrimitive.h
MoleculesToTriangles/CXXClasses/CXXMatrix.cpp
MoleculesToTriangles/CXXClasses/CXXMatrix.h
MoleculesToTriangles/CXXClasses/Callbacks.h
MoleculesToTriangles/CXXClasses/Camera.cpp
MoleculesToTriangles/CXXClasses/Camera.h
MoleculesToTriangles/CXXClasses/CameraPort.cpp
MoleculesToTriangles/CXXClasses/CameraPort.h
MoleculesToTriangles/CXXClasses/ColorNamesMap.h
MoleculesToTriangles/CXXClasses/ColorRule.cpp
MoleculesToTriangles/CXXClasses/ColorRule.h
MoleculesToTriangles/CXXClasses/ColorScheme.cpp
MoleculesToTriangles/CXXClasses/ColorScheme.h
MoleculesToTriangles/CXXClasses/CompoundSelection.cpp
MoleculesToTriangles/CXXClasses/CompoundSelection.h
MoleculesToTriangles/CXXClasses/CylinderPoint.cpp
MoleculesToTriangles/CXXClasses/CylinderPoint.h
MoleculesToTriangles/CXXClasses/CylindersPrimitive.cpp
MoleculesToTriangles/CXXClasses/CylindersPrimitive.h
MoleculesToTriangles/CXXClasses/DemoApp.cpp
MoleculesToTriangles/CXXClasses/DirectedPositionedEntity.cpp
MoleculesToTriangles/CXXClasses/DirectedPositionedEntity.h
MoleculesToTriangles/CXXClasses/DiscreteSegment.cpp
MoleculesToTriangles/CXXClasses/DiscreteSegment.h
MoleculesToTriangles/CXXClasses/DishyBase.cpp
MoleculesToTriangles/CXXClasses/DishyBase.h
MoleculesToTriangles/CXXClasses/DisplayPrimitive.cpp
MoleculesToTriangles/CXXClasses/DisplayPrimitive.h
MoleculesToTriangles/CXXClasses/ElectrostaticColorScheme.cpp
MoleculesToTriangles/CXXClasses/ElectrostaticColorScheme.hpp
MoleculesToTriangles/CXXClasses/FlatFanPrimitive.cpp
MoleculesToTriangles/CXXClasses/FlatFanPrimitive.h
MoleculesToTriangles/CXXClasses/GLIndexType.h
MoleculesToTriangles/CXXClasses/Light.cpp
MoleculesToTriangles/CXXClasses/Light.h
MoleculesToTriangles/CXXClasses/LinesPrimitive.cpp
MoleculesToTriangles/CXXClasses/LinesPrimitive.h
MoleculesToTriangles/CXXClasses/MolecularRepresentation.cpp
MoleculesToTriangles/CXXClasses/MolecularRepresentation.h
MoleculesToTriangles/CXXClasses/MolecularRepresentationInstance.cpp
MoleculesToTriangles/CXXClasses/MolecularRepresentationInstance.h
MoleculesToTriangles/CXXClasses/MyMolecule.cpp
MoleculesToTriangles/CXXClasses/MyMolecule.h
MoleculesToTriangles/CXXClasses/NRStuff.cpp
MoleculesToTriangles/CXXClasses/NRStuff.h
MoleculesToTriangles/CXXClasses/Polyhedron.cpp
MoleculesToTriangles/CXXClasses/Polyhedron.h
MoleculesToTriangles/CXXClasses/PositionedEntity.cpp
MoleculesToTriangles/CXXClasses/PositionedEntity.h
MoleculesToTriangles/CXXClasses/Renderer.cpp
MoleculesToTriangles/CXXClasses/Renderer.h
MoleculesToTriangles/CXXClasses/RendererGL.cpp
MoleculesToTriangles/CXXClasses/RendererGL.h
MoleculesToTriangles/CXXClasses/RendererGLSL.cpp
MoleculesToTriangles/CXXClasses/RendererGLSL.hpp
MoleculesToTriangles/CXXClasses/Representation.cpp
MoleculesToTriangles/CXXClasses/Representation.h
MoleculesToTriangles/CXXClasses/RepresentationInstance.cpp
MoleculesToTriangles/CXXClasses/RepresentationInstance.h
MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.cpp
MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h
MoleculesToTriangles/CXXClasses/SceneSetup.cpp
MoleculesToTriangles/CXXClasses/SceneSetup.h
MoleculesToTriangles/CXXClasses/SecondaryColorScheme.cpp
MoleculesToTriangles/CXXClasses/SecondaryColorScheme.h
MoleculesToTriangles/CXXClasses/SolidColorRule.cpp
MoleculesToTriangles/CXXClasses/SolidColorRule.h
MoleculesToTriangles/CXXClasses/SpherePrimitive.cpp
MoleculesToTriangles/CXXClasses/SpherePrimitive.h
MoleculesToTriangles/CXXClasses/SticksPrimitive.cpp
MoleculesToTriangles/CXXClasses/SticksPrimitive.h
MoleculesToTriangles/CXXClasses/SurfacePrimitive.cpp
MoleculesToTriangles/CXXClasses/SurfacePrimitive.h
MoleculesToTriangles/CXXClasses/VertexColorNormalPrimitive.cpp
MoleculesToTriangles/CXXClasses/VertexColorNormalPrimitive.h
MoleculesToTriangles/CXXClasses/lfit.h
MoleculesToTriangles/CXXClasses/oglPolyhedron.cpp
MoleculesToTriangles/CXXClasses/oglPolyhedron.h
MoleculesToTriangles/CXXSurface/CXXAlloc.h
MoleculesToTriangles/CXXSurface/CXXBall.cpp
MoleculesToTriangles/CXXSurface/CXXBall.h
MoleculesToTriangles/CXXSurface/CXXChargeTable.cpp
MoleculesToTriangles/CXXSurface/CXXChargeTable.h
MoleculesToTriangles/CXXSurface/CXXCircle.cpp
MoleculesToTriangles/CXXSurface/CXXCircle.h
MoleculesToTriangles/CXXSurface/CXXCircleNode.cpp
MoleculesToTriangles/CXXSurface/CXXCircleNode.h
MoleculesToTriangles/CXXSurface/CXXCoord.cpp
MoleculesToTriangles/CXXSurface/CXXCoord.h
MoleculesToTriangles/CXXSurface/CXXCreator.cpp
MoleculesToTriangles/CXXSurface/CXXCreator.h
MoleculesToTriangles/CXXSurface/CXXException.cpp
MoleculesToTriangles/CXXSurface/CXXException.h
MoleculesToTriangles/CXXSurface/CXXFFTSolventMap.h
MoleculesToTriangles/CXXSurface/CXXFortranFile.cpp
MoleculesToTriangles/CXXSurface/CXXFortranFile.h
MoleculesToTriangles/CXXSurface/CXXMatrix4x4.h
MoleculesToTriangles/CXXSurface/CXXNewHood.cpp
MoleculesToTriangles/CXXSurface/CXXNewHood.h
MoleculesToTriangles/CXXSurface/CXXPointyBit.h
MoleculesToTriangles/CXXSurface/CXXQADSurface.cpp
MoleculesToTriangles/CXXSurface/CXXQADSurface.h
MoleculesToTriangles/CXXSurface/CXXQADSurfaceStaticData.cpp
MoleculesToTriangles/CXXSurface/CXXSpace.cpp
MoleculesToTriangles/CXXSurface/CXXSpace.h
MoleculesToTriangles/CXXSurface/CXXSphereElement.cpp
MoleculesToTriangles/CXXSurface/CXXSphereElement.h
MoleculesToTriangles/CXXSurface/CXXSphereFlatTriangle.h
MoleculesToTriangles/CXXSurface/CXXSphereNode.cpp
MoleculesToTriangles/CXXSurface/CXXSphereNode.h
MoleculesToTriangles/CXXSurface/CXXSphereTriangle.cpp
MoleculesToTriangles/CXXSurface/CXXSphereTriangle.h
MoleculesToTriangles/CXXSurface/CXXSphereTriangleEdge.cpp
MoleculesToTriangles/CXXSurface/CXXSphereTriangleEdge.h
MoleculesToTriangles/CXXSurface/CXXSurface.cpp
MoleculesToTriangles/CXXSurface/CXXSurface.h
MoleculesToTriangles/CXXSurface/CXXSurfaceMaker.cpp
MoleculesToTriangles/CXXSurface/CXXSurfaceMaker.h
MoleculesToTriangles/CXXSurface/CXXSurfaceVertex.cpp
MoleculesToTriangles/CXXSurface/CXXSurfaceVertex.h
MoleculesToTriangles/CXXSurface/CXXTorusElement.cpp
MoleculesToTriangles/CXXSurface/CXXTorusElement.h
MoleculesToTriangles/CXXSurface/CXXTorusNode.cpp
MoleculesToTriangles/CXXSurface/CXXTorusNode.h
MoleculesToTriangles/CXXSurface/CXXTorusTriangle.h.h
MoleculesToTriangles/CXXSurface/CXXTriangle.cpp
MoleculesToTriangles/CXXSurface/CXXTriangle.h
MoleculesToTriangles/CXXSurface/CXXUtils.cpp
MoleculesToTriangles/CXXSurface/CXXUtils.h
MoleculesToTriangles/CXXSurface/CXXVCN.cpp
MoleculesToTriangles/CXXSurface/CXXVCN.h
MoleculesToTriangles/CXXSurface/TokenIterator.h
Copyright: 2009, Martin Noble, University of Oxford
2010, Martin Noble, University of Oxford
2011, Martin Noble, University of Oxford
2012, Martin Noble, University of Oxford
2016, Martin Noble, University of Oxford
2017, Martin Noble, University of Oxford
License: LGPL-3+
Files: ccp4mg-utils/mgtree.cc
ccp4mg-utils/mgtree.h
ccp4mg-utils/mmut/mman_base.cc
ccp4mg-utils/mmut/mman_base.h
ccp4mg-utils/mmut/mman_manager.cc
ccp4mg-utils/mmut/mman_manager.h
ccp4mg-utils/mmut/mmut_basepairs.cc
ccp4mg-utils/mmut/mmut_basepairs.h
ccp4mg-utils/mmut/mmut_bonds.cc
ccp4mg-utils/mmut/mmut_bonds.h
ccp4mg-utils/mmut/mmut_colour.cc
ccp4mg-utils/mmut/mmut_colour.h
ccp4mg-utils/mmut/mmut_connectivity.cc
ccp4mg-utils/mmut/mmut_connectivity.h
ccp4mg-utils/mmut/mmut_contact.cc
ccp4mg-utils/mmut/mmut_contact.h
ccp4mg-utils/mmut/mmut_hbond.cc
ccp4mg-utils/mmut/mmut_hbond.h
ccp4mg-utils/mmut/mmut_lipids.h
ccp4mg-utils/mmut/mmut_manager.cc
ccp4mg-utils/mmut/mmut_manager.h
ccp4mg-utils/mmut/mmut_morph.h
ccp4mg-utils/mmut/mmut_nma.cc
ccp4mg-utils/mmut/mmut_nma.h
ccp4mg-utils/mmut/mmut_sasarea.cc
ccp4mg-utils/mmut/mmut_sasarea.h
ccp4mg-utils/mmut/mmut_sbase.cc
ccp4mg-utils/mmut/mmut_sbase.h
ccp4mg-utils/mmut/mmut_secstr.cc
ccp4mg-utils/mmut/mmut_secstr.h
ccp4mg-utils/mmut/mmut_spline.cc
ccp4mg-utils/mmut/mmut_util.cc
ccp4mg-utils/mmut/mmut_util.h
ccp4mg-utils/mmut/splineinfo.h
ccp4mg-utils/pygl/atom_util.cc
ccp4mg-utils/pygl/atom_util.h
ccp4mg-utils/pygl/bezier.cc
ccp4mg-utils/pygl/billboard.cc
ccp4mg-utils/pygl/build_tree_primitives.cc
ccp4mg-utils/pygl/catmull.cc
ccp4mg-utils/pygl/catmull.h
ccp4mg-utils/pygl/cbuild.h
ccp4mg-utils/pygl/cdisplayobject.cc
ccp4mg-utils/pygl/cdisplayobject.h
ccp4mg-utils/pygl/cprimitive.cc
ccp4mg-utils/pygl/cprimitive.h
ccp4mg-utils/pygl/font_info.cc
ccp4mg-utils/pygl/font_info.h
ccp4mg-utils/pygl/font_util.cc
ccp4mg-utils/pygl/font_util.h
ccp4mg-utils/pygl/freetype_font.cc
ccp4mg-utils/pygl/freetype_font.h
ccp4mg-utils/pygl/help.cc
ccp4mg-utils/pygl/help.h
ccp4mg-utils/pygl/lincrv.h
ccp4mg-utils/pygl/psutil.cc
ccp4mg-utils/pygl/psutil.h
ccp4mg-utils/pygl/rgbreps.cc
ccp4mg-utils/pygl/rgbreps.h
ccp4mg-utils/pygl/sphere.cc
ccp4mg-utils/pygl/sphere.h
ccp4mg-utils/pygl/sphere_1.h
ccp4mg-utils/pygl/sphere_2.h
ccp4mg-utils/pygl/sphere_3.h
ccp4mg-utils/pygl/splineset.cc
ccp4mg-utils/pygl/subdivide.cc
ccp4mg-utils/pygl/subdivide.h
ccp4mg-utils/pygl/symmetry.cc
ccp4mg-utils/pygl/symmetry.h
ccp4mg-utils/pygl/text.cc
ccp4mg-utils/pygl/texture.cc
ccp4mg-utils/pygl/texture.h
ccp4mg-utils/pygl/win_font.cc
ccp4mg-utils/pygl/win_font.h
ccp4mg-utils/pygl/x11_font.cc
ccp4mg-utils/pygl/x11_font.h
ccp4mg-utils/pygl/zsortps.cc
ccp4mg-utils/util/CParamsManager.cc
ccp4mg-utils/util/CParamsManager.h
ccp4mg-utils/util/cartesian.cc
ccp4mg-utils/util/cartesian.h
ccp4mg-utils/util/connect.cc
ccp4mg-utils/util/connect.h
ccp4mg-utils/util/geomutil.cc
ccp4mg-utils/util/geomutil.h
ccp4mg-utils/util/matrix.cc
ccp4mg-utils/util/matrix.h
ccp4mg-utils/util/mginterrupt.cc
ccp4mg-utils/util/mginterrupt.h
ccp4mg-utils/util/mgtree.cc
ccp4mg-utils/util/mgtree.h
ccp4mg-utils/util/mgutil.cc
ccp4mg-utils/util/mgutil.h
ccp4mg-utils/util/plane.cc
ccp4mg-utils/util/plane.h
ccp4mg-utils/util/quat.cc
ccp4mg-utils/util/quat.h
ccp4mg-utils/util/redirect.cc
ccp4mg-utils/util/volume.cc
ccp4mg-utils/util/volume.h
Copyright: 2001-2008, University of York, CCLRC
License: LGPL-3
Files: api/filo-tests.cc
api/filo-tests.hh
coot-utils/coot-h-bonds.hh
coot-utils/coot-hole.hh
coot-utils/coot-lsq-types.h
coot-utils/elastic.cc
coot-utils/elastic.hh
coot-utils/helix-analysis.cc
coot-utils/helix-analysis.hh
coot-utils/read-sm-cif.hh
coot-utils/test-elastic.cc
coot-utils/test-h-bonds.cc
coot-utils/test-hole.cc
coot-utils/test-morph.cc
coot-utils/xmap-stats.hh
geometry/lbg-graph.cc
geometry/lbg-graph.cc-m
geometry/lbg-graph.hh
geometry/test-read-components.cc
ligand/chi-angles-autogen.cc
ligand/primitive-chi-angles.cc
ligand/primitive-chi-angles.hh
ligand/read-dunbrack.awk
ligand/richardson-rotamer.cc
ligand/richardson-rotamers.cc
skeleton/BuildCas.h
skeleton/dm-utils.cc
skeleton/graphical_skel.cc
skeleton/graphical_skel.h
src/add-c-extern.sh
src/blank.cc
src/c-inner-main.h
src/c-interface-ligands-swig.hh
src/c-interface-wii.cc
src/canvas-fixes.hh
src/cc-interface-mogul.hh
src/cmtz-interface.hh
src/command-arg.hh
src/command-line.hh
src/coot-align.cc
src/coot-align.hh
src/coot-colour.hh
src/coot-database.hh
src/coot-fileselections.h
src/coot-glue.hh
src/coot-hydrogens.cc
src/coot-hydrogens.hh
src/coot-nomenclature.hh
src/coot-preferences.h
src/coot-references.h
src/coot-render.hh
src/coot.i
src/fix-nomenclature.cc
src/flev.hh
src/get-residue.cc
src/get-residue.hh
src/gl-bits.hh
src/gl-matrix.cc
src/graphics-info-network.cc
src/graphics-info-scripting.cc
src/gtk-manual.hh
src/gtk-widget-conversion-utils.cc
src/gtk-widget-conversion-utils.h
src/guile-fixups.h
src/history_list.hh
src/interface.c
src/interface.h
src/lbg-callbacks-outer.cc
src/lbg-interface.hh
src/mmcif-sfs-to-mtz-main.cc
src/molecule-class-info-dots.cc
src/molecule-class-info.h
src/named-rotamer-score.hh
src/pisa-interface.hh
src/post-glade
src/post-gtk2-glade.sh
src/protein_db-interface.cc
src/protein_db-interface.hh
src/restraints-editor-c.h
src/rotate-translate-modes.hh
src/sdf-interface.hh
src/sdf-internal.hh
src/select-atom-info.hh
src/seq-view-interface.c
src/seq-view-interface.h
src/support-gtk2-extras.c
src/support.c
src/test-chol.cc
src/test-lbg-graph.cc
src/testing-scm.cc
src/testing-scm.hh
src/triangle-extras.h
src/user-mods.cc
src/user-mods.hh
src/xmap-utils.cc
src/xmap-utils.h
Copyright: 2007, University of York
2008, University of York
2009, University of York
2010, University of York
2011, University of York
2012, University of York
2023, University of York
License: LGPL-3+
Files: build/CalphaBuild.cc
build/CalphaBuild.hh
build/testcabuild.cc
coords/Bond_lines_ext.cc
coords/Cartesian.cc
coords/Cartesian.h
coords/Makefile.am
coords/coot-close.cc
coords/coot-close.hh
coords/cos-sin.cc
coords/cos-sin.h
coords/mmdb-crystal.cc
coords/mmdb-crystal.h
coords/mmdb-extras.cc
coords/mmdb-extras.h
coords/mmdb.hh
coords/utils.cc
coords/utils.h
density-contour/density-contour-triangles.cc
density-contour/density-contour-triangles.hh
geometry/Makefile.am
geometry/Makefile.simple
ideal/Makefile.am
ideal/lograma.cpp
ideal/lograma.h
ideal/logramatest.cpp
ideal/molmantest.cc
ideal/pepflip.hh
ideal/regularize-minimol.cc
ideal/regularize-minimol.hh
ideal/test-indexing.cc
ideal/test-indexing.hh
ideal/with-geometry.cc
pyrogen/pyrogen-swig.i
skeleton/dm-utils.h
src/align.cc
src/c-inner-main.c
src/c-interface-gtk2.cc
src/c-interface-mmdb.hh
src/c-interface-python.cc
src/c-interface-python.hh
src/coot_pythonmodule.cc
src/density-score-by-residue-src.cc
src/geometry-graphs.cc
src/geometry-graphs.hh
src/gl-matrix.h
src/graphics-info-lsq.cc
src/graphics-info-pick.cc
src/graphics-info-preferences.cc
src/graphics-info-superpose.cc
src/molecule-class-info-kdc.cc
src/molecule-class-info-ribbons.cc
src/molecule-class-info-surface.cc
src/molecule-class-info-widget-work.cc
src/pick.cc
src/positioned-widgets.h
src/rama_mousey.cc
src/read-phs.h
src/sequence-view.cc
src/sequence-view.hh
utils/Makefile.am
utils/atomic-numbers.cc
utils/coot-fasta.hh
utils/coot-utils.hh
Copyright: 2001-2003, 2006, The University of York
2001-2006, The University of York
2001-2007, The University of York
2002, The University of York
2002-2003, The University of York
2002-2004, The University of York
2002-2005, The University of York
2002-2006, The University of York
2002-2007, The University of York
2004, 2006, The University of York
2004, The University of York
2004-2005, The University of York
2004-2006, The University of York
2005, The University of York
2005-2006, The University of York
2006, The University of York
2007, The University of York
2008, The University of York
2011, The University of York
2014, The University of York
2020, The University of York
License: LGPL-3+
Files: analysis/fraction_stats.py
analysis/mogul.cc
analysis/peptide-projection.cc
analysis/stats.cc
analysis/stats.hh
api/Makefile.am
api/coot-colour.cc
canyon/canyon-points.scm
canyon/canyon.cc
canyon/canyon.hh
canyon/quaternion.cc
coot-utils/atom-overlaps.cc
coot-utils/atom-overlaps.hh
coot-utils/coot-density-stats.hh
coot-utils/dictionary-atom-types.cc
coot-utils/slurp-map.cc
coot-utils/slurp-map.hh
coot-utils/test-chem-feat.cc
coot-utils/test-cod-atom-types.cc
coot-utils/test-spherical.cc
lidia-core/bond-record-container-t.cc
lidia-core/bond-record-container-t.hh
lidia-core/bond-table-record-t.cc
lidia-core/bond-table-record-t.hh
lidia-core/cod-atom-type-t.cc
lidia-core/cod-atom-type-t.hh
lidia-core/cod-atom-types.cc
lidia-core/cod-atom-types.hh
lidia-core/cod-types.cc
lidia-core/cod-types.hh
lidia-core/primes.hh
lidia-core/test-fei-vs-mine.py
ligand/ligand-percentiles.cc
ligand/ligands-db.cc
ligand/ligands-db.hh
ligand/make-ligands-db.cc
ligand/smith-waterman.cc
ligand/test-trace.cc
ligand/trace-2.cc
ligand/trace.cc
ligand/trace.hh
man/coot-compare-dictionaries.man
man/coot-mini-rsr.man
man/coot.man
man/findligand.man
man/findwaters.man
pli/Makefile.am
pli/pi-stacking.hh
pyrogen/mmff-restraints.cc
pyrogen/mmff-restraints.hh
python/coot_chemical_feature_clusters.py
python/ligand_validation_sliders.py
scheme/3d-generator-import.scm
scheme/contact-score-isolated-ligand.scm
scheme/dictionary-generators.scm
scheme/enhanced-ligand.scm
scheme/gui-add-linked-cho.scm
scheme/gui-hole.scm
scheme/gui-ligand-sliders.scm
scheme/gui-prosmart.scm
scheme/ligand-check.scm
scheme/run-mogul.scm
Copyright: 2010, Medical Research Council
2012-2014, Medical Research Council
2013, Medical Research Council
2014, Medical Research Council
2014-2015, Medical Research Council
2015, Medical Research Council
2016, Medical Research Council
2017, Medical Research Council
2018, Medical Research Council
2019, Medical Research Council
2020, Medical Research Council
2021, Medical Research Council
License: GPL-3+
Files: Makefile.am
analysis/Makefile.am
autogen.sh
build/Makefile.am
compat/coot-sysdep.h
coot-utils/atom-selection-container.cc
coot-utils/atom-selection-container.hh
coot-utils/coot-coord-utils-glyco.cc
coot-utils/coot-map-heavy.hh
coot-utils/coot-shelx.hh
coot-utils/coot-trim.hh
coot-utils/peak-search.hh
db-main/db-main.cc
db-main/db-main.hh
db-main/db-strands.cc
db-main/db-strands.hh
db-main/testdbmain.cc
density-contour/Makefile.am
high-res/Makefile.am
high-res/coot-atom-graph.hh
high-res/coot-node-info.hh
high-res/globularize.cc
high-res/trace-high-res.cc
ligand/chi-angles.cc
ligand/chi-angles.hh
ligand/dunbrack.cc
ligand/dunbrack.hh
ligand/fast-ss-search.hh
ligand/find-waters.cc
ligand/helix-placement.cc
ligand/helix-placement.hh
ligand/monomer-utils.cc
ligand/monomer-utils.hh
ligand/test-fffear-in-coot.cc
ligand/test-helix-placement.cc
ligand/test-random.cc
ligand/wligand.hh
macros/Makefile.am
macros/clipper.m4
macros/coot-database.m4
macros/coot-windows.m4
macros/glut.m4
macros/guile-gtk.m4
macros/with-guile.m4
mini-mol/Makefile.am
mini-mol/atom-quads.cc
mini-mol/mini-mol-utils.cc
mini-mol/mini-mol-utils.hh
mini-mol/mini-mol.hh
mini-mol/testminimol.cc
scheme/coot-lsq.scm
scheme/fitting.scm
scheme/group-settings.scm
scheme/refmac.scm
scheme/tips-gui.scm
setup/coot.csh.in
setup/coot.sh.in
shell-utils/shell-copyright-template.sh
skeleton/BuildCas.cc
skeleton/Makefile.am
Copyright: 2001-2003, 2006, The University of York
2001-2003, The University of York
2001-2004, 2006, The University of York
2001-2007, The University of York
2002, The University of York
2002-2003, 2006, The University of York
2002-2004, The University of York
2002-2005, The University of York
2002-2006, The University of York
2003, The University of York
2003-2004, 2006-2007, The University of York
2003-2004, The University of York
2004, 2006, The University of York
2004, The University of York
2004-2005, The University of York
2004-2006, The University of York
2004-2007, The University of York
2005, The University of York
2005-2006, The University of York
2005-2007, The University of York
2006, The University of York
2007, The University of York
2008, The University of York
2009, The University of York
2011, The University of York
License: GPL-3+
Files: rcrane/__init__.py
rcrane/about.py
rcrane/bondLength.py
rcrane/buildInitSugar.py
rcrane/buildPhosOxy.py
rcrane/calcCoords.py
rcrane/chain.py
rcrane/citationPopup.py
rcrane/coot_gui_adapter.py
rcrane/coot_utils_adapter.py
rcrane/extendChain.py
rcrane/guiUtils.py
rcrane/installRCrane.py
rcrane/launch.py
rcrane/linearInterp.py
rcrane/menu.py
rcrane/nextPhos.py
rcrane/nucleotide.py
rcrane/phenixRestraints.py
rcrane/preLaunchCheck.py
rcrane/pseudoMolecule.py
rcrane/pseudoPredictor.py
rcrane/puckerList.py
rcrane/reportInputErrors.py
rcrane/reviewSuitesGui.py
rcrane/rotData.py
rcrane/rotamerSeq.py
rcrane/rotamerize.py
rcrane/safelog.py
rcrane/selectMapDialog.py
rcrane/settings.py
rcrane/smoothProb.py
rcrane/stats.py
rcrane/strucCalc.py
rcrane/suite.py
rcrane/thetaEtaPredictor.py
rcrane/traceGui.py
Copyright: 2010, Kevin Keating
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2011, Kevin Keating
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License: ECL-2.0
Files: geometry/cif-parse-link.cc
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geometry/protein-geometry.hh
ideal/chi-squareds.cc
ideal/chirals.cc
ideal/distortion.cc
ideal/flanking.cc
ideal/gradients.cc
ideal/link-restraints.cc
ideal/make-restraints.cc
ideal/mini-rsr.cc
ideal/mods.cc
ideal/simple-restraint.cc
ideal/simple-restraint.hh
src/Makefile.am
src/c-interface-gui.cc
src/c-interface-ligands-gui.cc
src/c-interface-ligands.cc
src/c-interface-maps.cc
src/c-interface-ncs.cc
src/c-interface-preferences.cc
src/c-interface-waters-gui.cc
src/c-interface-waters.cc
src/generic-objects.cc
src/glade-callbacks-main-window.cc
src/glade-callbacks-preferences.cc
src/glade-callbacks-shader-settings.cc
src/glade-callbacks.cc
src/graphics-info-graphs.cc
src/main.cc
src/molecule-class-info-ncs.cc
src/molecule-class-info-other.cc
Copyright: 2001-2007, The University of York
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License: LGPL-3+
Files: coot-utils/voidp-buffer.hh
layla/generators.cpp
layla/generators.hpp
layla/layla_embedded.cpp
layla/layla_embedded.hpp
layla/ligand_editor_canvas.cpp
layla/ligand_editor_canvas.hpp
layla/ligand_editor_canvas/core.cpp
layla/ligand_editor_canvas/core.hpp
layla/ligand_editor_canvas/model.cpp
layla/ligand_editor_canvas/model.hpp
layla/ligand_editor_canvas/render.cpp
layla/ligand_editor_canvas/render.hpp
layla/ligand_editor_canvas/tools.cpp
layla/ligand_editor_canvas/tools.hpp
layla/main.cpp
layla/notifier.cpp
layla/notifier.hpp
layla/python_utils.cpp
layla/python_utils.hpp
layla/signals.cpp
layla/state.cpp
layla/state.hpp
layla/ui.cpp
layla/ui.hpp
layla/utils.cpp
layla/utils.hpp
lhasa/embind.cpp
lhasa/embind.hpp
lhasa/glog_replacement.cpp
lhasa/glog_replacement.hpp
lhasa/lhasa.cpp
lhasa/lhasa.hpp
Copyright: 2023, Global Phasing Ltd.
License: GPL-3+
Files: cootaneer/buccaneer-lib.cpp
cootaneer/buccaneer-lib.h
cootaneer/buccaneer-prot.cpp
cootaneer/buccaneer-prot.h
cootaneer/buccaneer-sequence.cpp
cootaneer/buccaneer-sequence.h
cootaneer/cootaneer-demo.cpp
cootaneer/cootaneer-sequence.cpp
cootaneer/cootaneer-sequence.h
cootilus/cootilus-build.cpp
cootilus/cootilus-build.h
cootilus/cootilus-demo.cpp
cootilus/nautilus-join.cpp
cootilus/nautilus-join.h
cootilus/nautilus-ss-find.cpp
cootilus/nautilus-ss-find.h
cootilus/nautilus-target.cpp
cootilus/nautilus-target.h
cootilus/nautilus-tools.cpp
cootilus/nautilus-tools.h
cootilus/nucleicacid_db.cpp
cootilus/nucleicacid_db.h
protein_db/protein_db.cpp
protein_db/protein_db.h
protein_db/protein_db_utils.cpp
protein_db/protein_db_utils.h
protein_db/rna_db.cpp
protein_db/rna_db.h
Copyright: 2002-2006, Kevin Cowtan
2003-2006, Kevin Cowtan
2006, Kevin Cowtan
2008-2009, Kevin Cowtan
2011, Kevin Cowtan
2012, Kevin Cowtan
License: LGPL-3+
Files: coot-utils/coot-coord-utils-nucleotides.cc
coot-utils/coot-h-bonds.cc
coot-utils/lsq-improve.cc
coot-utils/lsq-improve.hh
lidia-core/lbg-molfile.cc
lidia-core/lbg-molfile.hh
lidia-core/lbg-shared.cc
lidia-core/lbg-shared.hh
lidia-core/lig-build.cc
lidia-core/rdkit-interface.hh
ligand/dipole.cc
ligand/dipole.hh
ligand/rotamer-tables.cc
macros/libglade.m4
mini-mol/atom-quads.hh
pli/flev-annotations.hh
pli/protein-ligand-interactions.cc
pli/sdf-interface.hh
protein_db/Makefile.am
rama-data/Makefile.am
scheme/clear-backup.scm
src/c-interface-view.cc
Copyright: 2007, The University of Oxford
2008, The University of Oxford
2008-2009, The University of Oxford
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License: GPL-3+
Files: geometry/energy-lib.cc
pyrogen/atom_types.cc
src/additional-representation.hh
src/atom-attribute.hh
src/atom-name-bits.hh
src/atom-selection.hh
src/c-interface-generic-objects.h
src/c-interface-mogul.cc
src/c-interface-preferences.h
src/coot-setup-python.cc
src/drag-and-drop.cc
src/get-monomer.cc
src/lsq-dialog-values.hh
src/model-view.hh
src/molecule-class-info-refine.cc
src/ncs.hh
src/probe-clash-score.cc
src/probe-clash-score.hh
src/rama-rota-score.hh
src/testing.cc
src/view.cc
Copyright: 2008, the University of Oxford
2008-2010, the University of Oxford
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License: LGPL-3+
Files: analysis/b-factor-histogram.hh
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analysis/cablam.hh
utils/align-utils.cc
utils/align-utils.hh
utils/colour-holder.cc
utils/colour-holder.hh
utils/hsv-rgb.cc
utils/insertion-sort.cc
utils/insertion-sort.hh
utils/logging.cc
utils/logging.hh
utils/pir-alignment.cc
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utils/radix.cc
utils/radix.hh
utils/setup-syminfo.cc
utils/setup-syminfo.hh
Copyright: 2009, University of Oxford
License: LGPL-3+
Files: coot-utils/bonded-pairs.cc
coot-utils/bonded-pairs.hh
coot-utils/coot-least-squares.cc
coot-utils/coot-tree-extras.cc
coot-utils/glyco-torsions.cc
coot-utils/glyco-torsions.hh
coot-utils/hole.cc
coot-utils/read-sm-cif.cc
coot-utils/test-glyco-torsions.cc
coot-utils/water-coordination.cc
lidia-core/lig-build.hh
lidia-core/rdkit-interface.cc
pixmaps/Makefile.am
pli/sdf-interface.cc
pyrogen/Makefile.am
pyrogen/Makefile.simple
scheme/get-recent-pdbe.scm
sounds/Makefile.am
textures/Makefile.am
Copyright: 2009, The University of Oxford
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License: GPL-3+
Files: api/ncs.hh
doc/coot-shelx.tex
doc/tutorial-2.tex
lidia-core/chemical-feature-clusters.cc
lidia-core/chemical-feature-clusters.hh
ligand/multi-peptide.cc
pli/pi-stacking.cc
pyrogen/atom_types.py
pyrogen/py-restraints.cc
pyrogen/pyrogen.py
pyrogen/restraints-boost.cc
pyrogen/restraints-private.hh
pyrogen/restraints.cc
pyrogen/restraints.hh
python/pdbe_validation_data.py
scheme/get-ebi.scm
scheme/ncs.scm
scheme/template-key-bindings.scm
scheme/user-define-restraints.scm
Copyright: 2008, the University of Oxford
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License: GPL-3+
Files: geometry/chem_mods.cc
src/c-interface-analysis.cc
src/c-interface-database.hh
src/c-interface-ligands.hh
src/c-interface-network.cc
src/c-interface-nucleotides.cc
src/c-interface-pisa-gui.cc
src/c-interface-pisa.cc
src/c-interface-scm.cc
src/c-interface-scm.hh
src/c-interface-sfs.cc
src/cc-interface-network.hh
src/dots-representation.hh
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Copyright: 2007, The University of Oxford
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License: LGPL-3+
Files: configure.ac
coot-utils/coot-coord-extras.cc
coot-utils/coot-coord-lsq.cc
coot-utils/coot-rama.cc
coot-utils/coot-rama.hh
db-main/train-pepflip.cc
ligand/base-pairing.cc
ligand/base-pairing.hh
ligand/rotamer.cc
ligand/rotamer.hh
python-tests/04_cootaneer.py
python-tests/TestNCSFunctions.py
python-tests/TestRNAGhostsFunctions.py
python-tests/TestSSMFunctions.py
python-tests/TestShelxFunctions.py
python-tests/TestUtilsFunctions.py
scheme/libcheck.scm
Copyright: 2001-2004, 2006, The University of York
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2007-2008, The University of Oxford
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License: GPL-3+
Files: MoleculesToTriangles/CXXClasses/m4/mmdb.m4
coot-utils/Makefile.am
coot-utils/coot-fffear.cc
coot-utils/coot-map-heavy.cc
coot-utils/coot-map-utils.hh
coot-utils/xmap-stats.cc
high-res/coot-atom-graph.cc
ligand/fast-ss-search.cc
ligand/ligand-extras.cc
ligand/rigid-body.cc
macros/ccp4srs.m4
macros/goo-canvas.m4
macros/mmdb-ssm.m4
macros/mmdb.m4
macros/sys-build-type.m4
mini-mol/mini-mol.cc
Copyright: 2001-2007, The University of York
2002, The University of York
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License: GPL-3+
Files: coot-utils/test-shelx-reader.cc
coot-utils/trim.cc
high-res/high-res.cc
high-res/residue-distortions.cc
high-res/sequence-assignment.cc
high-res/sequence-assignment.hh
high-res/test-atom-graph.cc
high-res/testseqalign.cc
high-res/testseqassignment.cc
ligand/residue_by_phi_psi.hh
ligand/rigid-body.hh
ligand/testdunbrack.cc
scheme/gap.scm
scheme/mutate.scm
Copyright: 2003-2004, Paul Emsley, The University of York
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License: GPL-3+
Files: src/c-interface-gtk-widgets.h
src/c-interface-refmac.h
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src/c-interface.h
src/cc-interface.hh
src/drag-and-drop.hh
src/generic-display-objects-c.h
src/graphics-info.h
src/molecule-class-info-maps.cc
src/molecule-class-info-patterson.cc
src/molecule-class-info-residues.cc
src/molecule-class-info.cc
src/rama_mousey.hh
src/read-cif.h
Copyright: 2001-2007, The University of York
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Files: coords/Bond_lines.h
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ideal/pepflip.cc
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src/cmtz-interface.cc
src/command-line-extern.cc
src/command-line.cc
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utils/coot-fasta.cc
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Files: ccp4mg-utils/cartesian.cc
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ccp4mg-utils/matrix.h
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ccp4mg-utils/quat.h
Copyright: 2004, The University of York
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Files: coot-utils/coot-coord-utils.hh
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coot-utils/coot-shelx-ins.cc
coot-utils/peak-search.cc
ligand/find-ligand.cc
ligand/ligand-score-card.cc
ligand/ligand.cc
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src/c-interface.cc
Copyright: 2002-2005, The University of York
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Files: geometry/read-sbase.cc
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ideal/extra-restraints.cc
src/c-interface-residues.cc
src/flev.cc
src/graphics-ligand-view.cc
src/molecule-class-info-build.cc
src/nsv.cc
src/sdf-interface.cc
Copyright: 2009, The University of Oxford
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License: LGPL-3+
Files: python-tests/03_ligand.py
python-tests/TestLigandFunctions.py
python-tests/begin.py
python/a_rapper_gui.py
python/bones_reader.py
python/coot_testing_utils.py
python/python_coot_docs.py
python/what_check.py
Copyright: 2008, Bernhard Lohkamp, The University of York
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src/c-interface-refmac.cc
Copyright: 2002-2008, The University of York
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Files: MoleculesToTriangles/CXXClasses/Quaternion.cpp
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MoleculesToTriangles/CXXClasses/Vector2.cpp
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| |
| control file for coot-dbgsym_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.deb (click to toggle) | |
|---|---|
| Package: | coot-dbgsym |
| Source: | coot |
| Version: | 1.1.07.705.gb7e2c16a2+dfsg-1 |
| Auto-Built-Package: | debug-symbols |
| Architecture: | amd64 |
| Maintainer: | Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org> |
| Installed-Size: | 239835 |
| Depends: | coot (=1.1.07.705.gb7e2c16a2+dfsg-1) |
| Section: | debug |
| Priority: | optional |
| Description: | debug symbols for coot |
| Build-Ids: | 0168dcb0462a804d094d73e8b2c5cb4825d4799a 02d231c6a58b4180f22c7c2cd4be82ee2becba92 12dda0f66d301b00c59fd7b362fa8e6da2821751 1397fe105d5b6ca5dff7ff578bf20289e8683298 13ea12c78c633dbefc3fe8bfa7c3c60c1f435612 19ccb2a498091ab84bd090c850dbb353533b4562 1a5bf080da5a7a7deec0a3e23bc6c11680d00454 2442192585f24bd76e73e75708b4095fefed09d0 24f9df15ed6d8603d29c7c35dfcb79f3ab8cd0f8 25eacb4a5b0eaa5bcbf8f5e4e81fcd80eb65b21e 2708dd83f7616fc3bea4217b456dd8c14eaa43e6 2880bba650f62d649dc920f2f0e2d93e74f93cb5 295e8b9d573bad0d66d503076260d31a6d96b758 2fcf3e498538b66901a015f4e1043b27df59ad76 352f15f81dd52bac3e1658a92e48c6a608257364 3586a4e2fa749aa290ed493930d952816cb5fe01 3eba9b54c8e512f9f5b61d1529298dc2e15a058b 3f16cb297422789050b3191b1a2f7bab99165f18 3f8814f3c02be2b36cdd049a9da76f66b3c357bd 45462df4bb451e4f4561c72564e5c33090aa5f28 46d5692e49227d56309e715fa9b93aaa3cc623bf 581b522cfa5037b3ca29e73176442b7754d8bb18 589d1ed5f776618035d37634ec9da5a43438d461 6050237214eff0e9f12cd522c4cbfddb393c8c9b 6051a4b3ff4456971f80def3e8899ca416d6e05c 67ec33328a1966ebc0749248f4762d1fab77a238 7334bb23c0676bf8d0fcf050115d90e491f8160f 7f34fc51e7a450d8ce2f00cbe951624f66883503 85d4f867aa87b84038c67a027e3582732cff52bc 874fb28a322f1478ca4a9881246e78f10a907106 876a8b75d330a15885df3aa7fe6893c5d5b0fefe 8a248713af935cec068a03115e143639023d0dc9 8cbc64c9944f4e45c9aaf2d38392cf7a6e0b856e 91bf7d64da93a9daf7fb0d3e1979564e19f51169 9b5b7b7a0e6d19fe0490a119c240c3505b8fe802 9cd1ae8c51cd18958fb02bd15407203f63346aad a083eb96bacc9078d5df7965bb5b52c0560ede8e bf76cfdce7f1fd9c9ab2c64b485303a833d0f78a c0454b94e401559c8df7106a5f3860e778eb7814 c1fb2b1b561ac09ee19af651b981cc5606979d37 c41aac370e84abf60bdbf8f227e430373078f7b6 d0fc83ba5655bc9c65126afdf6f4879978c821f9 d8d24ffed4ee1b6aa371c9ec524b0b2dc8ec6c11 dcd70787c22b0db65ff1e02fbb569fe6d070753a ddb7af7a333c88e944469808ac7137429e19dac1 ef00b94a90ab1ea485f705e9c54870e99d2c02e1 f56f47e53878adf2e61d8fda8b710b7ff1063d55 f5738a32d5270c62aea0716308af4b87023c6b8e |
| contents of coot-dbgsym_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.deb (click to toggle) | |
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| copyright of coot-dbgsym_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.deb (click to toggle) | |
|---|---|
WARNING: No copyright found, please check package manually. | |
| control file for coot-doc_1.1.07.705.gb7e2c16a2+dfsg-1_all.deb (click to toggle) | |
|---|---|
| Package: | coot-doc |
| Source: | coot |
| Version: | 1.1.07.705.gb7e2c16a2+dfsg-1 |
| Architecture: | all |
| Maintainer: | Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org> |
| Installed-Size: | 2172 |
| Section: | science |
| Priority: | optional |
| Homepage: | https://github.com/pemsley/coot |
| Description: | documentation for Coot This is an interactive program for fitting atomic models to crystallographic electron density maps. This package contains documentation source files for Coot. |
| contents of coot-doc_1.1.07.705.gb7e2c16a2+dfsg-1_all.deb (click to toggle) | |
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drwxr-xr-x root/root 0 2024-04-05 12:10 ./ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/share/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/share/doc/coot/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/share/doc/coot/doc/ -rw-r--r-- root/root 1667 2024-04-04 09:46 ./usr/share/doc/coot/doc/3-amino-benzamide-2.eps.gz -rw-r--r-- root/root 16366 2024-04-04 09:46 ./usr/share/doc/coot/doc/3-amino-benzamide-2.png -rw-r--r-- root/root 3600 2024-04-04 09:46 ./usr/share/doc/coot/doc/Makefile.am -rw-r--r-- root/root 7023 2024-04-05 12:10 ./usr/share/doc/coot/doc/Makefile.gz -rw-r--r-- root/root 5973 2024-04-05 12:10 ./usr/share/doc/coot/doc/Makefile.in.gz -rw-r--r-- root/root 627 2024-04-04 09:46 ./usr/share/doc/coot/doc/carbo.txt -rw-r--r-- root/root 10399 2024-04-04 09:46 ./usr/share/doc/coot/doc/coot-faq.texi.gz -rw-r--r-- root/root 9091 2024-04-04 09:46 ./usr/share/doc/coot/doc/coot-plain-2.jpg -rw-r--r-- root/root 97410 2024-04-04 09:46 ./usr/share/doc/coot/doc/coot-plain-2.ps.gz -rw-r--r-- root/root 3807 2024-04-04 09:46 ./usr/share/doc/coot/doc/coot-reference-manual.texi.gz -rw-r--r-- root/root 8065 2024-04-04 09:46 ./usr/share/doc/coot/doc/coot-shelx.tex.gz -rw-r--r-- root/root 59042 2024-04-04 09:46 ./usr/share/doc/coot/doc/coot-user-manual.texi.gz -rw-r--r-- root/root 33105 2024-04-04 09:46 ./usr/share/doc/coot/doc/coot.tex.gz -rw-r--r-- root/root 2247 2024-04-04 09:46 ./usr/share/doc/coot/doc/crib-sheet.tex.gz -rw-r--r-- root/root 3352 2024-04-04 09:46 ./usr/share/doc/coot/doc/derivatives-part.tex.gz -rw-r--r-- root/root 3534 2024-04-04 09:46 ./usr/share/doc/coot/doc/derivatives.tex.gz -rw-r--r-- root/root 3434 2024-04-04 09:46 ./usr/share/doc/coot/doc/function-filter.scsh.gz -rw-r--r-- root/root 255290 2024-04-04 09:46 ./usr/share/doc/coot/doc/hydrogens-fixed.eps.gz -rw-r--r-- root/root 385746 2024-04-04 09:46 ./usr/share/doc/coot/doc/hydrogens-incorrect.eps.gz -rw-r--r-- root/root 1378 2024-04-04 09:46 ./usr/share/doc/coot/doc/interface-xml-to-texi.xsl.gz -rw-r--r-- root/root 3712 2024-04-04 09:46 ./usr/share/doc/coot/doc/ligand-fitting-tutorial.tex.gz -rw-r--r-- root/root 3125 2024-04-04 09:46 ./usr/share/doc/coot/doc/reference.tex.gz -rw-r--r-- root/root 4953 2024-04-04 09:46 ./usr/share/doc/coot/doc/scripting_tutorial.tex.gz -rw-r--r-- root/root 86518 2024-04-04 09:46 ./usr/share/doc/coot/doc/texinfo.tex.gz -rw-r--r-- root/root 5385 2024-04-04 09:46 ./usr/share/doc/coot/doc/tutorial-2.tex.gz -rw-r--r-- root/root 11851 2024-04-04 09:46 ./usr/share/doc/coot/doc/tutorial.tex.gz -rw-r--r-- root/root 2768 2024-04-04 09:46 ./usr/share/doc/coot/doc/validation-tutorial.tex.gz -rw-r--r-- root/root 997034 2024-04-04 09:46 ./usr/share/doc/coot/doc/viscotoxin.eps.gz -rw-r--r-- root/root 1335 2024-04-04 09:46 ./usr/share/doc/coot/doc/xml2texi.xsl.gz drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/share/doc/coot-doc/ -rw-r--r-- root/root 170 2024-04-05 12:10 ./usr/share/doc/coot-doc/changelog.Debian.gz -rw-r--r-- root/root 57131 2024-04-04 09:46 ./usr/share/doc/coot-doc/changelog.gz -rw-r--r-- root/root 115439 2024-04-05 07:14 ./usr/share/doc/coot-doc/copyright | |
| copyright of coot-doc_1.1.07.705.gb7e2c16a2+dfsg-1_all.deb (click to toggle) | |
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NOTE: Copyright is the same as coot (coot_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.deb). Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: Coot
Upstream-Contact: https://github.com/pemsley/coot/issues
Source: https://github.com/pemsley/coot
Files-Excluded:
fonts
Files: *
Copyright: 2001-2007, The University of York
2007-2012, The University of Oxford
2012-2016, Medical Research Council
1999-2024, Paul Emsley
License: GPL-3+
Files: analysis/b-factor-histogram.cc
analysis/coot-daca.cc
analysis/daca.cc
analysis/daca.hh
analysis/improper-dihedrals.cc
analysis/mogul-interface.hh
analysis/rna-backbone.cc
analysis/rna-backbone.hh
analysis/test-align.cc
analysis/test-cablam.cc
analysis/test-mogul.cc
analysis/test-rna-backbone.cc
analysis/test-stats.cc
analysis/typed-distances.cc
analysis/typed-distances.hh
api/add-terminal-residue.cc
api/add-terminal-residue.hh
api/api-cell.hh
api/atom-pull.hh
api/blender-mesh.cc
api/blender-mesh.hh
api/bond-colour.hh
api/cell.hh
api/clipper-ccp4-map-file-wrapper.hh
api/colour-functions.cc
api/colour-functions.hh
api/coot-colour.hh
api/coot-molecule-backup.cc
api/coot-molecule-blender.cc
api/coot-molecule-bonds-instanced.cc
api/coot-molecule-bonds.hh
api/coot-molecule-change-chain-id.cc
api/coot-molecule-maps.cc
api/coot-molecule-merge-molecules.cc
api/coot-molecule-moltris.cc
api/coot-molecule-refine.cc
api/coot-molecule-replace-fragment.cc
api/coot-molecule-validation.cc
api/coot-molecule.cc
api/coot-molecule.hh
coords/graphical-bonds-container.hh
coords/graphics-line.hh
coords/loop-path.cc
coords/loop-path.hh
coords/phenix-geo-bonds.cc
coords/phenix-geo.cc
coords/phenix-geo.hh
coords/phi-psi-prob.cc
coords/phi-psi-prob.hh
coords/rama-plot-phi-psi.cc
coords/rama-plot-phi-psi.hh
coords/ramachandran-container.hh
coords/ramachandran-validation.cc
coords/ramachandran-validation.hh
coords/rotamer-container.hh
coords/rotamer-markup.cc
coords/test-phenix-geo.cc
coords/test-transform.cc
coords/torus-description.hh
coot-utils/3d-texture.cc
coot-utils/3d-texture.hh
coot-utils/amp-reso.hh
coot-utils/arc-info.hh
coot-utils/atom-tools.cc
coot-utils/atom-tools.hh
coot-utils/atom-tree.hh
coot-utils/atom-vertex.hh
coot-utils/blob-line.cc
coot-utils/blob-line.hh
coot-utils/bonded-atoms.cc
coot-utils/bonded-atoms.hh
coot-utils/bricks.cc
coot-utils/c-beta-deviations.cc
coot-utils/c-beta-deviations.hh
coot-utils/cablam-markup.cc
coot-utils/cablam-markup.hh
coot-utils/cis-peptide-info.hh
coot-utils/cmtz-interface.cc
coot-utils/cmtz-interface.hh
coot-utils/cod-db-access.cc
coot-utils/contact-info.cc
coot-utils/contact-info.hh
coot-utils/contacts-by-bricks.cc
coot-utils/contacts-by-bricks.hh
coot-utils/coot-least-squares.hh
coot-utils/cylinder-with-rotation-translation.cc
coot-utils/cylinder-with-rotation-translation.hh
coot-utils/cylinder.cc
coot-utils/cylinder.hh
coot-utils/diff-diff-map-peaks.cc
coot-utils/diff-diff-map-peaks.hh
coot-utils/emma.hh
coot-utils/exp-fit.cc
coot-utils/exp-fit.hh
coot-utils/fast-eigens.cc
coot-utils/fast-eigens.hh
coot-utils/fib-sphere.cc
coot-utils/fib-sphere.hh
coot-utils/find-pepflip-using-difference-map.cc
coot-utils/find-pepflip-using-difference-map.hh
coot-utils/find-water-baddies.cc
coot-utils/find-water-baddies.hh
coot-utils/fragment-container.cc
coot-utils/fragment-container.hh
coot-utils/g_triangle.hh
coot-utils/gltf-export.cc
coot-utils/glyco-tree.hh
coot-utils/helix-like.cc
coot-utils/helix-like.hh
coot-utils/jed-flip.cc
coot-utils/jed-flip.hh
coot-utils/lidia-core-functions.cc
coot-utils/lidia-core-functions.hh
coot-utils/make-cablam-like-stats.cc
coot-utils/map-index.hh
coot-utils/merge-C-and-N-terminii.cc
coot-utils/merge-C-and-N-terminii.hh
coot-utils/merge-atom-selections.cc
coot-utils/merge-atom-selections.hh
coot-utils/merge-molecules.cc
coot-utils/merge-molecules.hh
coot-utils/mmrrcc.cc
coot-utils/mtz-column-auto-read.hh
coot-utils/mutate.cc
coot-utils/oct.cc
coot-utils/oct.hh
coot-utils/parse-pisa.cc
coot-utils/parse-pisa.hh
coot-utils/pepflip-using-difference-map.cc
coot-utils/pepflip-using-difference-map.hh
coot-utils/plane-utils.cc
coot-utils/plane-utils.hh
coot-utils/polar-atoms.cc
coot-utils/polar-atoms.hh
coot-utils/positron.cc
coot-utils/positron.hh
coot-utils/prideout-octasphere.hh
coot-utils/reduce.cc
coot-utils/reduce.hh
coot-utils/secondary-structure-headers.cc
coot-utils/secondary-structure-headers.hh
coot-utils/segmap.cc
coot-utils/segmap.hh
coot-utils/sfcalc-genmap.hh
coot-utils/shape-types.hh
coot-utils/shapes.cc
coot-utils/shapes.hh
coot-utils/simple-mesh.cc
coot-utils/simple-mesh.hh
coot-utils/spherical-harmonics.cc
coot-utils/spherical-harmonics.hh
coot-utils/stack-and-pair.cc
coot-utils/stack-and-pair.hh
coot-utils/strand-fragments.cc
coot-utils/strand-fragments.hh
coot-utils/strand-like.hh
coot-utils/test-5-residue-fragments.cc
coot-utils/test-cod-atom-types-from-sm-cif.cc
coot-utils/test-convolute.cc
coot-utils/test-coot-probe.cc
coot-utils/test-diff-diff-map-peaks.cc
coot-utils/test-emma.cc
coot-utils/test-parse-pisa.cc
coot-utils/test-segmap.cc
coot-utils/vertex.hh
density-contour/gaussian-surface.cc
density-contour/gaussian-surface.hh
density-contour/occlusion.cc
density-contour/occlusion.hh
density-contour/test-gaussian-surface.cc
density-contour/test-occlusion.cc
density-contour/transfer-occlusions.hh
geometry/bonded-quad.hh
geometry/chem_mods.hh
geometry/cif-parse-mon-lib.cc
geometry/compare-dictionaries.cc
geometry/dict-mismatches.hh
geometry/dict-utils.cc
geometry/dict-utils.hh
geometry/dictionary-bond-distributions.cc
geometry/dreiding.cc
geometry/gphl-chem-comp-info.hh
geometry/hb-types.hh
geometry/hydrophobic.cc
geometry/hydrophobic.hh
geometry/intercept-3GP.cc
geometry/main-chain.cc
geometry/main-chain.hh
geometry/make-shelx-restraints.cc
geometry/match-results.hh
geometry/mol-utils-2.cc
geometry/mol-utils-2.hh
geometry/mol-utils.cc
geometry/mol-utils.hh
geometry/pdbe-chem-comp-atom-depiction.hh
geometry/pdbx-chem-comp-description-generator.hh
geometry/protein-donor-acceptors.cc
geometry/protein-donor-acceptors.hh
geometry/read-metals-json.cc
geometry/residue-and-atom-specs.cc
geometry/srs-interface.cc
geometry/srs-interface.hh
high-res/high-res.hh
ideal/coot-compare-residues.cc
ideal/crankshaft-test.cc
ideal/crankshaft.cc
ideal/crankshaft.hh
ideal/extra-restraints.hh
ideal/lv.cc
ideal/model-bond-deltas.cc
ideal/model-bond-deltas.hh
ideal/neutron.cc
ideal/new-linked-residue-t.hh
ideal/ng.cc
ideal/parallel-planes.cc
ideal/parallel-planes.hh
ideal/phi-psi.cc
ideal/phi-psi.hh
ideal/process-dfs-in-range.cc
ideal/process-dfs-in-range.hh
ideal/pull-restraint.cc
ideal/rama-types.hh
ideal/refinement-lights.hh
ideal/refinement-results-t.hh
ideal/simulated-annealing.cc
ideal/test-rama-plot.cc
ideal/torsion-bonds.cc
ideal/torsion-bonds.hh
ideal/trans-peptide.cc
ideal/write-png.cc
ideal/write-png.hh
ideal/zo-rama.cc
ideal/zo-rama.hh
lidia-core/atom-types.cc
lidia-core/get-residue.cc
lidia-core/get-residue.hh
lidia-core/neighbour-sorter.hh
lidia-core/svg-molecule.cc
lidia-core/svg-molecule.hh
lidia-core/test-lig-build.cc
lidia-core/third-neighbour-info-t.hh
lidia-core/use-rdkit.hh
ligand/ca-torsion-info.cc
ligand/ca-torsion-info.hh
ligand/dSFMT-params19937.h
ligand/joining-residues.cc
ligand/libres-tracer.cc
ligand/libres-tracer.hh
ligand/ligand-score-card.hh
ligand/map-point-cluster.hh
ligand/multi-peptide.hh
ligand/new-residue-by-3-phi-psi.cc
ligand/new-residue-by-3-phi-psi.hh
ligand/rama-rsr-extend-fragments.cc
ligand/rama-rsr-extend-fragments.hh
ligand/refine-isolated-chain.cc
ligand/refine-isolated-chain.hh
ligand/res-tracer.cc
ligand/scored-molecule.hh
ligand/scored-node.hh
ligand/side-chain-densities.cc
ligand/side-chain-densities.hh
ligand/side-chain.cc
ligand/side-chain.hh
ligand/smith-waterman.hh
ligand/test-tube-finder.cc
ligand/tube-finder.cc
ligand/tube-finder.hh
mini-mol/mol-hierarchy.cc
pli/flev-annotations.cc
pli/protein-ligand-interactions.hh
pli/sdf-interface-for-export.hh
pli/sdf-internal.hh
pli/specs.cc
pli/specs.hh
pyrogen/cairo-molecule.cc
pyrogen/cairo-molecule.hh
src/9.ssao.shader
src/9.ssao_blur.shader
src/9.ssao_geometry.shader
src/Basic.shader
src/HUDMesh.cc
src/HUDMesh.hh
src/HUDTextureMesh.cc
src/HUDTextureMesh.hh
src/Instanced-Markup-Mesh.cc
src/Instanced-Markup-Mesh.hh
src/LigandViewMesh.cc
src/LigandViewMesh.hh
src/LinesMesh.cc
src/LinesMesh.hh
src/Material.hh
src/Mesh-from-glTF.cc
src/Mesh-from-graphical-bonds-instanced.cc
src/Mesh-from-graphical-bonds.cc
src/Mesh.cc
src/Mesh.hh
src/Model.cc
src/Model.hh
src/Particle.cc
src/Particle.hh
src/Shader.cc
src/Shader.hh
src/TemplateMesh.hh
src/Texture.cc
src/Texture.hh
src/TextureMesh.cc
src/TextureMesh.hh
src/animated-ligand.hh
src/array-2d.hh
src/atom-label-info.hh
src/atom-label.shader
src/atom-overlaps.cc
src/atom-pull.hh
src/background-image.shader
src/blur-x.shader
src/blur-y.shader
src/blur.shader
src/boids.cc
src/boids.hh
src/bond-colour-mode.hh
src/boot-python.cc
src/c-interface-bonds.cc
src/c-interface-bonds.hh
src/c-interface-curlew.cc
src/c-interface-curlew.hh
src/c-interface-geometry-distortion.hh
src/c-interface-gui.hh
src/c-interface-image.cc
src/c-interface-ligand-search.hh
src/c-interface-ligands-widgets.hh
src/c-interface-mogul-scripting.cc
src/c-interface-refine.hh
src/c-interface-sequence.cc
src/c-interface-sequence.hh
src/camera-facing-quad-shader-for-testing.shader
src/cc-interface-alignment.cc
src/cc-interface-alignment.hh
src/cc-interface-graphics.cc
src/cc-interface-graphics.hh
src/cc-interface-image.hh
src/cc-interface-map-utils.cc
src/cc-interface-merge.cc
src/cc-interface-molecular-representation.cc
src/cc-interface-molecular-representation.hh
src/cc-interface-molecular-symmetry.cc
src/cc-interface-png.cc
src/cc-interface-scripting.cc
src/cc-interface-user-defined-atom-colours.cc
src/cc-interface-user-defined-atom-colours.hh
src/central-cube.shader
src/cfc-widgets.hh
src/cfc.cc
src/cfc.hh
src/change-dir.cc
src/change-dir.hh
src/clip-hybrid-atom.hh
src/clipper-ccp4-map-file-wrapper.hh
src/clipper-to-glm.hh
src/cmtz-interface-gui.hh
src/colour-functions.hh
src/colour-holder-to-glm.hh
src/coot-application.cc
src/coot-application.hh
src/coot-colour.cc
src/coot-phi-psi.cc
src/coot-phi-psi.hh
src/coot-setup-python.hh
src/coot-version.hh
src/create-menu-item-actions.cc
src/create-menu-item-actions.hh
src/crunch-model.hh
src/curl-utils.hh
src/curlew-gtk4.cc
src/curlew-gtk4.hh
src/curlew.h
src/data-pair-remover.hh
src/density-results-container-t.hh
src/depth-of-field.shader
src/draw-2.hh
src/draw-generic-display-objects.cc
src/draw-map-cap.shader
src/draw.cc
src/draw.hh
src/dynamic-validation.cc
src/dynamic-validation.hh
src/effects.shader
src/event-controller-callbacks.cc
src/event-controller-callbacks.hh
src/extra-distance-restraint-markup.hh
src/extra-distance-restraints.shader
src/extra-restraints-representation.hh
src/eyes.cc
src/eyes.hh
src/fit-loop-gui.cc
src/fit-loop-gui.hh
src/fit-loop.cc
src/fit-loop.hh
src/fixup-interface.h.sh
src/framebuffer.cc
src/framebuffer.hh
src/fresnel-settings.hh
src/ft-character.hh
src/gaussian-surface.cc
src/generic-vertex.hh
src/gensurf.hh
src/gl-rama-plot.cc
src/gl-rama-plot.hh
src/glarea_tick_function.hh
src/globularize.cc
src/graphical-molecule.cc
src/graphical-molecule.hh
src/graphics-info-defines-gtk4.cc
src/graphics-info-draw-models.cc
src/graphics-info-draw.cc
src/graphics-info-init.cc
src/graphics-info-intermediate.cc
src/graphics-info-opengl.cc
src/graphics-info-refine.cc
src/graphics-info-render-scene.cc
src/graphics-info-statics.cc
src/graphics-info-tick-function.cc
src/graphics-ligand-mesh-molecule.cc
src/graphics-ligand-mesh-molecule.hh
src/gtkglarea-rama-plot.hh
src/hud-bars.shader
src/hud-geometry-tooltip-text.shader
src/hud-image-texture.shader
src/hud-labels.shader
src/hud-lines.shader
src/hud-text.shader
src/idles.hh
src/init-from-gtkbuilder.cc
src/init-from-gtkbuilder.hh
src/init_coot_as_python_module.cc
src/init_coot_as_python_module.hh
src/instanced-meshes-for-shadow-map.shader
src/instanced-meshes-for-ssao.shader
src/instanced-meshes-with-shadows.shader
src/instanced-objects.shader
src/key-bindings.cc
src/key-bindings.hh
src/labelled-button-info.hh
src/ligand-check.hh
src/ligand-view.shader
src/lights-info.hh
src/lines-pulse.shader
src/lines.shader
src/make-a-dodec.cc
src/make-a-dodec.hh
src/map.shader
src/map_triangle.hh
src/matrix-utils.cc
src/matrix-utils.hh
src/meshed-generic-display-object.cc
src/meshed-generic-display-object.hh
src/meshed-particle-container.hh
src/meshes-for-shadow-map.shader
src/meshes-for-ssao.shader
src/meshes-with-shadows.shader
src/meshes.shader
src/model-as-mesh.shader
src/model-molecule-meshes.cc
src/model-molecule-meshes.hh
src/model.shader
src/mol-hierarchy.cc
src/mol-tri.hh
src/molecular-mesh-generator-mol-tris.cc
src/molecular-mesh-generator.cc
src/molecular-mesh-generator.hh
src/molecular-triangles-mesh.hh
src/molecule-class-info-alignment.cc
src/molecule-class-info-analysis.cc
src/molecule-class-info-bonds.cc
src/molecule-class-info-dots-internal.cc
src/molecule-class-info-geometry.cc
src/molecule-class-info-maps-2.cc
src/molecule-class-info-mol-tris.cc
src/molecule-class-info-molecular-symmetry.cc
src/molecule-class-info-string.cc
src/moleculestotriangles.shader
src/mtz-column-auto-read.hh
src/new-startup.cc
src/obj_loader.cc
src/obj_loader.h
src/old-event-callbacks.cc
src/old-generic-display-object.cc
src/old-generic-display-object.hh
src/outline-of-active-residue.shader
src/particles.shader
src/pick.hh
src/positron-plot.cc
src/pulse-data.hh
src/pumpkin.cc
src/pumpkin.hh
src/python-classes.cc
src/python-classes.hh
src/python-scripting-gui.hh
src/rail-points.hh
src/rama-balls.shader
src/rama-plot-axes-and-ticks.shader
src/rama-plot-phi-psi-markers.shader
src/rama-plot-phi-psi.cc
src/rama-plot-phi-psi.hh
src/rdkit-smiles.cc
src/read-cif.cc
src/read-molecule.hh
src/residue-markers-for-ssao.shader
src/residue-markers.shader
src/restore-these.hh
src/rotation-centre-cross-hairs-for-ssao.shader
src/rsr-functions.cc
src/rsr-functions.hh
src/screen.shader
src/screendump-tga.cc
src/screendump-tga.hh
src/setup-gui-components.cc
src/setup-gui-components.hh
src/shadow-map-image-texture.shader
src/simple-distance-object.hh
src/simple-refmac.cc
src/single-map-properties-dialog.cc
src/single-map-properties-dialog.hh
src/sound-mac.cc
src/sound.cc
src/sound.hh
src/spherical-density.cc
src/startup-utils.cc
src/startup-utils.hh
src/symmetry-atoms-lines.shader
src/template-python-function.cc
src/testing-2.cc
src/text-rendering-utils.cc
src/text-rendering-utils.hh
src/texture-meshes-for-ssao.shader
src/texture-meshes-shadow-map.shader
src/texture-meshes-with-shadows.shader
src/texture-meshes.shader
src/ud-colour-rule.hh
src/updating-coordinates-molecule-parameters.hh
src/updating-map-params.hh
src/validation.cc
src/validation.hh
src/vnc-vertex-to-generic-vertex.hh
src/widget-from-builder.cc
src/widget-from-builder.hh
src/widget-headers.hh
utils/dodec.cc
utils/dodec.hh
utils/split-indices.cc
utils/split-indices.hh
utils/test-logging.cc
utils/test-utils.cc
utils/threads.cc
utils/win-compat.cc
utils/win-compat.hh
validation-graphs/gtk4-test-sequence-view.cc
validation-graphs/gtk4-test-validation-graph.cc
validation-graphs/residue-validation-information.cc
validation-graphs/residue-validation-information.hh
validation-graphs/validation-graphs.cc
validation-graphs/validation-graphs.hh
validation-graphs/validation-information.cc
validation-graphs/validation-information.hh
Copyright: 2007, Medical Research Council
2011, Medical Research Council
2012, Medical Research Council
2012-2014, Medical Research Council
2013, 2015, Medical Research Council
2013, Medical Research Council
2014, Medical Research Council
2014-2015, Medical Research Council
2015, Medical Research Council
2016, Medical Research Council
2017, Medical Research Council
2018, Medical Research Council
2019, Medical Research Council
2020, Medical Research Council
2021, Medical Research Council
2022, Medical Research Council
2023, Medical Research Council
2024, Medical Research Council
License: LGPL-3+
Files: MoleculesToTriangles/CXXClasses/AtomPropertyRampColorRule.cpp
MoleculesToTriangles/CXXClasses/AtomPropertyRampColorRule.h
MoleculesToTriangles/CXXClasses/BallsPrimitive.cpp
MoleculesToTriangles/CXXClasses/BallsPrimitive.h
MoleculesToTriangles/CXXClasses/BondsPrimitive.cpp
MoleculesToTriangles/CXXClasses/BondsPrimitive.h
MoleculesToTriangles/CXXClasses/BoostWrappers.cpp
MoleculesToTriangles/CXXClasses/BoxSectionPrimitive.cpp
MoleculesToTriangles/CXXClasses/BoxSectionPrimitive.h
MoleculesToTriangles/CXXClasses/CXXMatrix.cpp
MoleculesToTriangles/CXXClasses/CXXMatrix.h
MoleculesToTriangles/CXXClasses/Callbacks.h
MoleculesToTriangles/CXXClasses/Camera.cpp
MoleculesToTriangles/CXXClasses/Camera.h
MoleculesToTriangles/CXXClasses/CameraPort.cpp
MoleculesToTriangles/CXXClasses/CameraPort.h
MoleculesToTriangles/CXXClasses/ColorNamesMap.h
MoleculesToTriangles/CXXClasses/ColorRule.cpp
MoleculesToTriangles/CXXClasses/ColorRule.h
MoleculesToTriangles/CXXClasses/ColorScheme.cpp
MoleculesToTriangles/CXXClasses/ColorScheme.h
MoleculesToTriangles/CXXClasses/CompoundSelection.cpp
MoleculesToTriangles/CXXClasses/CompoundSelection.h
MoleculesToTriangles/CXXClasses/CylinderPoint.cpp
MoleculesToTriangles/CXXClasses/CylinderPoint.h
MoleculesToTriangles/CXXClasses/CylindersPrimitive.cpp
MoleculesToTriangles/CXXClasses/CylindersPrimitive.h
MoleculesToTriangles/CXXClasses/DemoApp.cpp
MoleculesToTriangles/CXXClasses/DirectedPositionedEntity.cpp
MoleculesToTriangles/CXXClasses/DirectedPositionedEntity.h
MoleculesToTriangles/CXXClasses/DiscreteSegment.cpp
MoleculesToTriangles/CXXClasses/DiscreteSegment.h
MoleculesToTriangles/CXXClasses/DishyBase.cpp
MoleculesToTriangles/CXXClasses/DishyBase.h
MoleculesToTriangles/CXXClasses/DisplayPrimitive.cpp
MoleculesToTriangles/CXXClasses/DisplayPrimitive.h
MoleculesToTriangles/CXXClasses/ElectrostaticColorScheme.cpp
MoleculesToTriangles/CXXClasses/ElectrostaticColorScheme.hpp
MoleculesToTriangles/CXXClasses/FlatFanPrimitive.cpp
MoleculesToTriangles/CXXClasses/FlatFanPrimitive.h
MoleculesToTriangles/CXXClasses/GLIndexType.h
MoleculesToTriangles/CXXClasses/Light.cpp
MoleculesToTriangles/CXXClasses/Light.h
MoleculesToTriangles/CXXClasses/LinesPrimitive.cpp
MoleculesToTriangles/CXXClasses/LinesPrimitive.h
MoleculesToTriangles/CXXClasses/MolecularRepresentation.cpp
MoleculesToTriangles/CXXClasses/MolecularRepresentation.h
MoleculesToTriangles/CXXClasses/MolecularRepresentationInstance.cpp
MoleculesToTriangles/CXXClasses/MolecularRepresentationInstance.h
MoleculesToTriangles/CXXClasses/MyMolecule.cpp
MoleculesToTriangles/CXXClasses/MyMolecule.h
MoleculesToTriangles/CXXClasses/NRStuff.cpp
MoleculesToTriangles/CXXClasses/NRStuff.h
MoleculesToTriangles/CXXClasses/Polyhedron.cpp
MoleculesToTriangles/CXXClasses/Polyhedron.h
MoleculesToTriangles/CXXClasses/PositionedEntity.cpp
MoleculesToTriangles/CXXClasses/PositionedEntity.h
MoleculesToTriangles/CXXClasses/Renderer.cpp
MoleculesToTriangles/CXXClasses/Renderer.h
MoleculesToTriangles/CXXClasses/RendererGL.cpp
MoleculesToTriangles/CXXClasses/RendererGL.h
MoleculesToTriangles/CXXClasses/RendererGLSL.cpp
MoleculesToTriangles/CXXClasses/RendererGLSL.hpp
MoleculesToTriangles/CXXClasses/Representation.cpp
MoleculesToTriangles/CXXClasses/Representation.h
MoleculesToTriangles/CXXClasses/RepresentationInstance.cpp
MoleculesToTriangles/CXXClasses/RepresentationInstance.h
MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.cpp
MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h
MoleculesToTriangles/CXXClasses/SceneSetup.cpp
MoleculesToTriangles/CXXClasses/SceneSetup.h
MoleculesToTriangles/CXXClasses/SecondaryColorScheme.cpp
MoleculesToTriangles/CXXClasses/SecondaryColorScheme.h
MoleculesToTriangles/CXXClasses/SolidColorRule.cpp
MoleculesToTriangles/CXXClasses/SolidColorRule.h
MoleculesToTriangles/CXXClasses/SpherePrimitive.cpp
MoleculesToTriangles/CXXClasses/SpherePrimitive.h
MoleculesToTriangles/CXXClasses/SticksPrimitive.cpp
MoleculesToTriangles/CXXClasses/SticksPrimitive.h
MoleculesToTriangles/CXXClasses/SurfacePrimitive.cpp
MoleculesToTriangles/CXXClasses/SurfacePrimitive.h
MoleculesToTriangles/CXXClasses/VertexColorNormalPrimitive.cpp
MoleculesToTriangles/CXXClasses/VertexColorNormalPrimitive.h
MoleculesToTriangles/CXXClasses/lfit.h
MoleculesToTriangles/CXXClasses/oglPolyhedron.cpp
MoleculesToTriangles/CXXClasses/oglPolyhedron.h
MoleculesToTriangles/CXXSurface/CXXAlloc.h
MoleculesToTriangles/CXXSurface/CXXBall.cpp
MoleculesToTriangles/CXXSurface/CXXBall.h
MoleculesToTriangles/CXXSurface/CXXChargeTable.cpp
MoleculesToTriangles/CXXSurface/CXXChargeTable.h
MoleculesToTriangles/CXXSurface/CXXCircle.cpp
MoleculesToTriangles/CXXSurface/CXXCircle.h
MoleculesToTriangles/CXXSurface/CXXCircleNode.cpp
MoleculesToTriangles/CXXSurface/CXXCircleNode.h
MoleculesToTriangles/CXXSurface/CXXCoord.cpp
MoleculesToTriangles/CXXSurface/CXXCoord.h
MoleculesToTriangles/CXXSurface/CXXCreator.cpp
MoleculesToTriangles/CXXSurface/CXXCreator.h
MoleculesToTriangles/CXXSurface/CXXException.cpp
MoleculesToTriangles/CXXSurface/CXXException.h
MoleculesToTriangles/CXXSurface/CXXFFTSolventMap.h
MoleculesToTriangles/CXXSurface/CXXFortranFile.cpp
MoleculesToTriangles/CXXSurface/CXXFortranFile.h
MoleculesToTriangles/CXXSurface/CXXMatrix4x4.h
MoleculesToTriangles/CXXSurface/CXXNewHood.cpp
MoleculesToTriangles/CXXSurface/CXXNewHood.h
MoleculesToTriangles/CXXSurface/CXXPointyBit.h
MoleculesToTriangles/CXXSurface/CXXQADSurface.cpp
MoleculesToTriangles/CXXSurface/CXXQADSurface.h
MoleculesToTriangles/CXXSurface/CXXQADSurfaceStaticData.cpp
MoleculesToTriangles/CXXSurface/CXXSpace.cpp
MoleculesToTriangles/CXXSurface/CXXSpace.h
MoleculesToTriangles/CXXSurface/CXXSphereElement.cpp
MoleculesToTriangles/CXXSurface/CXXSphereElement.h
MoleculesToTriangles/CXXSurface/CXXSphereFlatTriangle.h
MoleculesToTriangles/CXXSurface/CXXSphereNode.cpp
MoleculesToTriangles/CXXSurface/CXXSphereNode.h
MoleculesToTriangles/CXXSurface/CXXSphereTriangle.cpp
MoleculesToTriangles/CXXSurface/CXXSphereTriangle.h
MoleculesToTriangles/CXXSurface/CXXSphereTriangleEdge.cpp
MoleculesToTriangles/CXXSurface/CXXSphereTriangleEdge.h
MoleculesToTriangles/CXXSurface/CXXSurface.cpp
MoleculesToTriangles/CXXSurface/CXXSurface.h
MoleculesToTriangles/CXXSurface/CXXSurfaceMaker.cpp
MoleculesToTriangles/CXXSurface/CXXSurfaceMaker.h
MoleculesToTriangles/CXXSurface/CXXSurfaceVertex.cpp
MoleculesToTriangles/CXXSurface/CXXSurfaceVertex.h
MoleculesToTriangles/CXXSurface/CXXTorusElement.cpp
MoleculesToTriangles/CXXSurface/CXXTorusElement.h
MoleculesToTriangles/CXXSurface/CXXTorusNode.cpp
MoleculesToTriangles/CXXSurface/CXXTorusNode.h
MoleculesToTriangles/CXXSurface/CXXTorusTriangle.h.h
MoleculesToTriangles/CXXSurface/CXXTriangle.cpp
MoleculesToTriangles/CXXSurface/CXXTriangle.h
MoleculesToTriangles/CXXSurface/CXXUtils.cpp
MoleculesToTriangles/CXXSurface/CXXUtils.h
MoleculesToTriangles/CXXSurface/CXXVCN.cpp
MoleculesToTriangles/CXXSurface/CXXVCN.h
MoleculesToTriangles/CXXSurface/TokenIterator.h
Copyright: 2009, Martin Noble, University of Oxford
2010, Martin Noble, University of Oxford
2011, Martin Noble, University of Oxford
2012, Martin Noble, University of Oxford
2016, Martin Noble, University of Oxford
2017, Martin Noble, University of Oxford
License: LGPL-3+
Files: ccp4mg-utils/mgtree.cc
ccp4mg-utils/mgtree.h
ccp4mg-utils/mmut/mman_base.cc
ccp4mg-utils/mmut/mman_base.h
ccp4mg-utils/mmut/mman_manager.cc
ccp4mg-utils/mmut/mman_manager.h
ccp4mg-utils/mmut/mmut_basepairs.cc
ccp4mg-utils/mmut/mmut_basepairs.h
ccp4mg-utils/mmut/mmut_bonds.cc
ccp4mg-utils/mmut/mmut_bonds.h
ccp4mg-utils/mmut/mmut_colour.cc
ccp4mg-utils/mmut/mmut_colour.h
ccp4mg-utils/mmut/mmut_connectivity.cc
ccp4mg-utils/mmut/mmut_connectivity.h
ccp4mg-utils/mmut/mmut_contact.cc
ccp4mg-utils/mmut/mmut_contact.h
ccp4mg-utils/mmut/mmut_hbond.cc
ccp4mg-utils/mmut/mmut_hbond.h
ccp4mg-utils/mmut/mmut_lipids.h
ccp4mg-utils/mmut/mmut_manager.cc
ccp4mg-utils/mmut/mmut_manager.h
ccp4mg-utils/mmut/mmut_morph.h
ccp4mg-utils/mmut/mmut_nma.cc
ccp4mg-utils/mmut/mmut_nma.h
ccp4mg-utils/mmut/mmut_sasarea.cc
ccp4mg-utils/mmut/mmut_sasarea.h
ccp4mg-utils/mmut/mmut_sbase.cc
ccp4mg-utils/mmut/mmut_sbase.h
ccp4mg-utils/mmut/mmut_secstr.cc
ccp4mg-utils/mmut/mmut_secstr.h
ccp4mg-utils/mmut/mmut_spline.cc
ccp4mg-utils/mmut/mmut_util.cc
ccp4mg-utils/mmut/mmut_util.h
ccp4mg-utils/mmut/splineinfo.h
ccp4mg-utils/pygl/atom_util.cc
ccp4mg-utils/pygl/atom_util.h
ccp4mg-utils/pygl/bezier.cc
ccp4mg-utils/pygl/billboard.cc
ccp4mg-utils/pygl/build_tree_primitives.cc
ccp4mg-utils/pygl/catmull.cc
ccp4mg-utils/pygl/catmull.h
ccp4mg-utils/pygl/cbuild.h
ccp4mg-utils/pygl/cdisplayobject.cc
ccp4mg-utils/pygl/cdisplayobject.h
ccp4mg-utils/pygl/cprimitive.cc
ccp4mg-utils/pygl/cprimitive.h
ccp4mg-utils/pygl/font_info.cc
ccp4mg-utils/pygl/font_info.h
ccp4mg-utils/pygl/font_util.cc
ccp4mg-utils/pygl/font_util.h
ccp4mg-utils/pygl/freetype_font.cc
ccp4mg-utils/pygl/freetype_font.h
ccp4mg-utils/pygl/help.cc
ccp4mg-utils/pygl/help.h
ccp4mg-utils/pygl/lincrv.h
ccp4mg-utils/pygl/psutil.cc
ccp4mg-utils/pygl/psutil.h
ccp4mg-utils/pygl/rgbreps.cc
ccp4mg-utils/pygl/rgbreps.h
ccp4mg-utils/pygl/sphere.cc
ccp4mg-utils/pygl/sphere.h
ccp4mg-utils/pygl/sphere_1.h
ccp4mg-utils/pygl/sphere_2.h
ccp4mg-utils/pygl/sphere_3.h
ccp4mg-utils/pygl/splineset.cc
ccp4mg-utils/pygl/subdivide.cc
ccp4mg-utils/pygl/subdivide.h
ccp4mg-utils/pygl/symmetry.cc
ccp4mg-utils/pygl/symmetry.h
ccp4mg-utils/pygl/text.cc
ccp4mg-utils/pygl/texture.cc
ccp4mg-utils/pygl/texture.h
ccp4mg-utils/pygl/win_font.cc
ccp4mg-utils/pygl/win_font.h
ccp4mg-utils/pygl/x11_font.cc
ccp4mg-utils/pygl/x11_font.h
ccp4mg-utils/pygl/zsortps.cc
ccp4mg-utils/util/CParamsManager.cc
ccp4mg-utils/util/CParamsManager.h
ccp4mg-utils/util/cartesian.cc
ccp4mg-utils/util/cartesian.h
ccp4mg-utils/util/connect.cc
ccp4mg-utils/util/connect.h
ccp4mg-utils/util/geomutil.cc
ccp4mg-utils/util/geomutil.h
ccp4mg-utils/util/matrix.cc
ccp4mg-utils/util/matrix.h
ccp4mg-utils/util/mginterrupt.cc
ccp4mg-utils/util/mginterrupt.h
ccp4mg-utils/util/mgtree.cc
ccp4mg-utils/util/mgtree.h
ccp4mg-utils/util/mgutil.cc
ccp4mg-utils/util/mgutil.h
ccp4mg-utils/util/plane.cc
ccp4mg-utils/util/plane.h
ccp4mg-utils/util/quat.cc
ccp4mg-utils/util/quat.h
ccp4mg-utils/util/redirect.cc
ccp4mg-utils/util/volume.cc
ccp4mg-utils/util/volume.h
Copyright: 2001-2008, University of York, CCLRC
License: LGPL-3
Files: api/filo-tests.cc
api/filo-tests.hh
coot-utils/coot-h-bonds.hh
coot-utils/coot-hole.hh
coot-utils/coot-lsq-types.h
coot-utils/elastic.cc
coot-utils/elastic.hh
coot-utils/helix-analysis.cc
coot-utils/helix-analysis.hh
coot-utils/read-sm-cif.hh
coot-utils/test-elastic.cc
coot-utils/test-h-bonds.cc
coot-utils/test-hole.cc
coot-utils/test-morph.cc
coot-utils/xmap-stats.hh
geometry/lbg-graph.cc
geometry/lbg-graph.cc-m
geometry/lbg-graph.hh
geometry/test-read-components.cc
ligand/chi-angles-autogen.cc
ligand/primitive-chi-angles.cc
ligand/primitive-chi-angles.hh
ligand/read-dunbrack.awk
ligand/richardson-rotamer.cc
ligand/richardson-rotamers.cc
skeleton/BuildCas.h
skeleton/dm-utils.cc
skeleton/graphical_skel.cc
skeleton/graphical_skel.h
src/add-c-extern.sh
src/blank.cc
src/c-inner-main.h
src/c-interface-ligands-swig.hh
src/c-interface-wii.cc
src/canvas-fixes.hh
src/cc-interface-mogul.hh
src/cmtz-interface.hh
src/command-arg.hh
src/command-line.hh
src/coot-align.cc
src/coot-align.hh
src/coot-colour.hh
src/coot-database.hh
src/coot-fileselections.h
src/coot-glue.hh
src/coot-hydrogens.cc
src/coot-hydrogens.hh
src/coot-nomenclature.hh
src/coot-preferences.h
src/coot-references.h
src/coot-render.hh
src/coot.i
src/fix-nomenclature.cc
src/flev.hh
src/get-residue.cc
src/get-residue.hh
src/gl-bits.hh
src/gl-matrix.cc
src/graphics-info-network.cc
src/graphics-info-scripting.cc
src/gtk-manual.hh
src/gtk-widget-conversion-utils.cc
src/gtk-widget-conversion-utils.h
src/guile-fixups.h
src/history_list.hh
src/interface.c
src/interface.h
src/lbg-callbacks-outer.cc
src/lbg-interface.hh
src/mmcif-sfs-to-mtz-main.cc
src/molecule-class-info-dots.cc
src/molecule-class-info.h
src/named-rotamer-score.hh
src/pisa-interface.hh
src/post-glade
src/post-gtk2-glade.sh
src/protein_db-interface.cc
src/protein_db-interface.hh
src/restraints-editor-c.h
src/rotate-translate-modes.hh
src/sdf-interface.hh
src/sdf-internal.hh
src/select-atom-info.hh
src/seq-view-interface.c
src/seq-view-interface.h
src/support-gtk2-extras.c
src/support.c
src/test-chol.cc
src/test-lbg-graph.cc
src/testing-scm.cc
src/testing-scm.hh
src/triangle-extras.h
src/user-mods.cc
src/user-mods.hh
src/xmap-utils.cc
src/xmap-utils.h
Copyright: 2007, University of York
2008, University of York
2009, University of York
2010, University of York
2011, University of York
2012, University of York
2023, University of York
License: LGPL-3+
Files: build/CalphaBuild.cc
build/CalphaBuild.hh
build/testcabuild.cc
coords/Bond_lines_ext.cc
coords/Cartesian.cc
coords/Cartesian.h
coords/Makefile.am
coords/coot-close.cc
coords/coot-close.hh
coords/cos-sin.cc
coords/cos-sin.h
coords/mmdb-crystal.cc
coords/mmdb-crystal.h
coords/mmdb-extras.cc
coords/mmdb-extras.h
coords/mmdb.hh
coords/utils.cc
coords/utils.h
density-contour/density-contour-triangles.cc
density-contour/density-contour-triangles.hh
geometry/Makefile.am
geometry/Makefile.simple
ideal/Makefile.am
ideal/lograma.cpp
ideal/lograma.h
ideal/logramatest.cpp
ideal/molmantest.cc
ideal/pepflip.hh
ideal/regularize-minimol.cc
ideal/regularize-minimol.hh
ideal/test-indexing.cc
ideal/test-indexing.hh
ideal/with-geometry.cc
pyrogen/pyrogen-swig.i
skeleton/dm-utils.h
src/align.cc
src/c-inner-main.c
src/c-interface-gtk2.cc
src/c-interface-mmdb.hh
src/c-interface-python.cc
src/c-interface-python.hh
src/coot_pythonmodule.cc
src/density-score-by-residue-src.cc
src/geometry-graphs.cc
src/geometry-graphs.hh
src/gl-matrix.h
src/graphics-info-lsq.cc
src/graphics-info-pick.cc
src/graphics-info-preferences.cc
src/graphics-info-superpose.cc
src/molecule-class-info-kdc.cc
src/molecule-class-info-ribbons.cc
src/molecule-class-info-surface.cc
src/molecule-class-info-widget-work.cc
src/pick.cc
src/positioned-widgets.h
src/rama_mousey.cc
src/read-phs.h
src/sequence-view.cc
src/sequence-view.hh
utils/Makefile.am
utils/atomic-numbers.cc
utils/coot-fasta.hh
utils/coot-utils.hh
Copyright: 2001-2003, 2006, The University of York
2001-2006, The University of York
2001-2007, The University of York
2002, The University of York
2002-2003, The University of York
2002-2004, The University of York
2002-2005, The University of York
2002-2006, The University of York
2002-2007, The University of York
2004, 2006, The University of York
2004, The University of York
2004-2005, The University of York
2004-2006, The University of York
2005, The University of York
2005-2006, The University of York
2006, The University of York
2007, The University of York
2008, The University of York
2011, The University of York
2014, The University of York
2020, The University of York
License: LGPL-3+
Files: analysis/fraction_stats.py
analysis/mogul.cc
analysis/peptide-projection.cc
analysis/stats.cc
analysis/stats.hh
api/Makefile.am
api/coot-colour.cc
canyon/canyon-points.scm
canyon/canyon.cc
canyon/canyon.hh
canyon/quaternion.cc
coot-utils/atom-overlaps.cc
coot-utils/atom-overlaps.hh
coot-utils/coot-density-stats.hh
coot-utils/dictionary-atom-types.cc
coot-utils/slurp-map.cc
coot-utils/slurp-map.hh
coot-utils/test-chem-feat.cc
coot-utils/test-cod-atom-types.cc
coot-utils/test-spherical.cc
lidia-core/bond-record-container-t.cc
lidia-core/bond-record-container-t.hh
lidia-core/bond-table-record-t.cc
lidia-core/bond-table-record-t.hh
lidia-core/cod-atom-type-t.cc
lidia-core/cod-atom-type-t.hh
lidia-core/cod-atom-types.cc
lidia-core/cod-atom-types.hh
lidia-core/cod-types.cc
lidia-core/cod-types.hh
lidia-core/primes.hh
lidia-core/test-fei-vs-mine.py
ligand/ligand-percentiles.cc
ligand/ligands-db.cc
ligand/ligands-db.hh
ligand/make-ligands-db.cc
ligand/smith-waterman.cc
ligand/test-trace.cc
ligand/trace-2.cc
ligand/trace.cc
ligand/trace.hh
man/coot-compare-dictionaries.man
man/coot-mini-rsr.man
man/coot.man
man/findligand.man
man/findwaters.man
pli/Makefile.am
pli/pi-stacking.hh
pyrogen/mmff-restraints.cc
pyrogen/mmff-restraints.hh
python/coot_chemical_feature_clusters.py
python/ligand_validation_sliders.py
scheme/3d-generator-import.scm
scheme/contact-score-isolated-ligand.scm
scheme/dictionary-generators.scm
scheme/enhanced-ligand.scm
scheme/gui-add-linked-cho.scm
scheme/gui-hole.scm
scheme/gui-ligand-sliders.scm
scheme/gui-prosmart.scm
scheme/ligand-check.scm
scheme/run-mogul.scm
Copyright: 2010, Medical Research Council
2012-2014, Medical Research Council
2013, Medical Research Council
2014, Medical Research Council
2014-2015, Medical Research Council
2015, Medical Research Council
2016, Medical Research Council
2017, Medical Research Council
2018, Medical Research Council
2019, Medical Research Council
2020, Medical Research Council
2021, Medical Research Council
License: GPL-3+
Files: Makefile.am
analysis/Makefile.am
autogen.sh
build/Makefile.am
compat/coot-sysdep.h
coot-utils/atom-selection-container.cc
coot-utils/atom-selection-container.hh
coot-utils/coot-coord-utils-glyco.cc
coot-utils/coot-map-heavy.hh
coot-utils/coot-shelx.hh
coot-utils/coot-trim.hh
coot-utils/peak-search.hh
db-main/db-main.cc
db-main/db-main.hh
db-main/db-strands.cc
db-main/db-strands.hh
db-main/testdbmain.cc
density-contour/Makefile.am
high-res/Makefile.am
high-res/coot-atom-graph.hh
high-res/coot-node-info.hh
high-res/globularize.cc
high-res/trace-high-res.cc
ligand/chi-angles.cc
ligand/chi-angles.hh
ligand/dunbrack.cc
ligand/dunbrack.hh
ligand/fast-ss-search.hh
ligand/find-waters.cc
ligand/helix-placement.cc
ligand/helix-placement.hh
ligand/monomer-utils.cc
ligand/monomer-utils.hh
ligand/test-fffear-in-coot.cc
ligand/test-helix-placement.cc
ligand/test-random.cc
ligand/wligand.hh
macros/Makefile.am
macros/clipper.m4
macros/coot-database.m4
macros/coot-windows.m4
macros/glut.m4
macros/guile-gtk.m4
macros/with-guile.m4
mini-mol/Makefile.am
mini-mol/atom-quads.cc
mini-mol/mini-mol-utils.cc
mini-mol/mini-mol-utils.hh
mini-mol/mini-mol.hh
mini-mol/testminimol.cc
scheme/coot-lsq.scm
scheme/fitting.scm
scheme/group-settings.scm
scheme/refmac.scm
scheme/tips-gui.scm
setup/coot.csh.in
setup/coot.sh.in
shell-utils/shell-copyright-template.sh
skeleton/BuildCas.cc
skeleton/Makefile.am
Copyright: 2001-2003, 2006, The University of York
2001-2003, The University of York
2001-2004, 2006, The University of York
2001-2007, The University of York
2002, The University of York
2002-2003, 2006, The University of York
2002-2004, The University of York
2002-2005, The University of York
2002-2006, The University of York
2003, The University of York
2003-2004, 2006-2007, The University of York
2003-2004, The University of York
2004, 2006, The University of York
2004, The University of York
2004-2005, The University of York
2004-2006, The University of York
2004-2007, The University of York
2005, The University of York
2005-2006, The University of York
2005-2007, The University of York
2006, The University of York
2007, The University of York
2008, The University of York
2009, The University of York
2011, The University of York
License: GPL-3+
Files: rcrane/__init__.py
rcrane/about.py
rcrane/bondLength.py
rcrane/buildInitSugar.py
rcrane/buildPhosOxy.py
rcrane/calcCoords.py
rcrane/chain.py
rcrane/citationPopup.py
rcrane/coot_gui_adapter.py
rcrane/coot_utils_adapter.py
rcrane/extendChain.py
rcrane/guiUtils.py
rcrane/installRCrane.py
rcrane/launch.py
rcrane/linearInterp.py
rcrane/menu.py
rcrane/nextPhos.py
rcrane/nucleotide.py
rcrane/phenixRestraints.py
rcrane/preLaunchCheck.py
rcrane/pseudoMolecule.py
rcrane/pseudoPredictor.py
rcrane/puckerList.py
rcrane/reportInputErrors.py
rcrane/reviewSuitesGui.py
rcrane/rotData.py
rcrane/rotamerSeq.py
rcrane/rotamerize.py
rcrane/safelog.py
rcrane/selectMapDialog.py
rcrane/settings.py
rcrane/smoothProb.py
rcrane/stats.py
rcrane/strucCalc.py
rcrane/suite.py
rcrane/thetaEtaPredictor.py
rcrane/traceGui.py
Copyright: 2010, Kevin Keating
2010-2011, 2102, Kevin Keating
2010-2011, Kevin Keating
2010-2012, Kevin Keating
2011, Kevin Keating
2011-2012, Kevin Keating
2012, Kevin Keating
License: ECL-2.0
Files: geometry/cif-parse-link.cc
geometry/cif-parse.cc
geometry/dictionary-residue.cc
geometry/glyco-tools.cc
geometry/link.cc
geometry/protein-geometry.cc
geometry/protein-geometry.hh
ideal/chi-squareds.cc
ideal/chirals.cc
ideal/distortion.cc
ideal/flanking.cc
ideal/gradients.cc
ideal/link-restraints.cc
ideal/make-restraints.cc
ideal/mini-rsr.cc
ideal/mods.cc
ideal/simple-restraint.cc
ideal/simple-restraint.hh
src/Makefile.am
src/c-interface-gui.cc
src/c-interface-ligands-gui.cc
src/c-interface-ligands.cc
src/c-interface-maps.cc
src/c-interface-ncs.cc
src/c-interface-preferences.cc
src/c-interface-waters-gui.cc
src/c-interface-waters.cc
src/generic-objects.cc
src/glade-callbacks-main-window.cc
src/glade-callbacks-preferences.cc
src/glade-callbacks-shader-settings.cc
src/glade-callbacks.cc
src/graphics-info-graphs.cc
src/main.cc
src/molecule-class-info-ncs.cc
src/molecule-class-info-other.cc
Copyright: 2001-2007, The University of York
2002-2003, The University of York
2002-2005, The University of York
2002-2006, The University of York
2002-2007, The University of York
2003-2004, 2007, The University of York
2003-2006, The University of York
2004-2005, The University of York
2004-2007, The University of York
2005-2006, The University of York
2007, 2009, 2011-2012, The University of Oxford
2007, 2012, The University of Oxford
2007, The University of Oxford
2007, The University of York
2007-2008, The University of Oxford
2007-2009, The University of Oxford
2007-2012, The University of Oxford
2008, 2010, The University of Oxford
2008, The University of Oxford
2008-2009, 2011-2012, The University of Oxford
2008-2009, The University of Oxford
2008-2010, The University of Oxford
2008-2012, The University of Oxford
2009, The University of Oxford
2012-2015, Medical Research Council
2013, 2015-2016, Medical Research Council
2013, Medical Research Council
2013-2014, Medical Research Council
2013-2015, 2018, 2020-2021, Medical Research Council
2013-2015, Medical Research Council
2013-2016, Medical Research Council
2014, Medical Research Council
2014-2015, Medical Research Council
2014-2016, Medical Research Council
2015-2016, Medical Research Council
2016, Medical Research Council
License: LGPL-3+
Files: coot-utils/voidp-buffer.hh
layla/generators.cpp
layla/generators.hpp
layla/layla_embedded.cpp
layla/layla_embedded.hpp
layla/ligand_editor_canvas.cpp
layla/ligand_editor_canvas.hpp
layla/ligand_editor_canvas/core.cpp
layla/ligand_editor_canvas/core.hpp
layla/ligand_editor_canvas/model.cpp
layla/ligand_editor_canvas/model.hpp
layla/ligand_editor_canvas/render.cpp
layla/ligand_editor_canvas/render.hpp
layla/ligand_editor_canvas/tools.cpp
layla/ligand_editor_canvas/tools.hpp
layla/main.cpp
layla/notifier.cpp
layla/notifier.hpp
layla/python_utils.cpp
layla/python_utils.hpp
layla/signals.cpp
layla/state.cpp
layla/state.hpp
layla/ui.cpp
layla/ui.hpp
layla/utils.cpp
layla/utils.hpp
lhasa/embind.cpp
lhasa/embind.hpp
lhasa/glog_replacement.cpp
lhasa/glog_replacement.hpp
lhasa/lhasa.cpp
lhasa/lhasa.hpp
Copyright: 2023, Global Phasing Ltd.
License: GPL-3+
Files: cootaneer/buccaneer-lib.cpp
cootaneer/buccaneer-lib.h
cootaneer/buccaneer-prot.cpp
cootaneer/buccaneer-prot.h
cootaneer/buccaneer-sequence.cpp
cootaneer/buccaneer-sequence.h
cootaneer/cootaneer-demo.cpp
cootaneer/cootaneer-sequence.cpp
cootaneer/cootaneer-sequence.h
cootilus/cootilus-build.cpp
cootilus/cootilus-build.h
cootilus/cootilus-demo.cpp
cootilus/nautilus-join.cpp
cootilus/nautilus-join.h
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| |
| control file for libcootapi-dev_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.deb (click to toggle) | |
|---|---|
| Package: | libcootapi-dev |
| Source: | coot |
| Version: | 1.1.07.705.gb7e2c16a2+dfsg-1 |
| Architecture: | amd64 |
| Maintainer: | Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org> |
| Installed-Size: | 179 |
| Depends: | libcootapi1.1 (=1.1.07.705.gb7e2c16a2+dfsg-1) |
| Section: | libdevel |
| Priority: | optional |
| Homepage: | https://github.com/pemsley/coot |
| Description: | development files for libcoot Coot is an interactive program for fitting atomic models to crystallographic electron density maps. . This package contains the development files. |
| contents of libcootapi-dev_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.deb (click to toggle) | |
|---|---|
drwxr-xr-x root/root 0 2024-04-05 12:10 ./ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/lib/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/share/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/share/doc/libcootapi-dev/ -rw-r--r-- root/root 170 2024-04-05 12:10 ./usr/share/doc/libcootapi-dev/changelog.Debian.gz -rw-r--r-- root/root 57131 2024-04-04 09:46 ./usr/share/doc/libcootapi-dev/changelog.gz -rw-r--r-- root/root 115439 2024-04-05 07:14 ./usr/share/doc/libcootapi-dev/copyright lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/libcootapi.so -> libcootapi.so.1.1 | |
| copyright of libcootapi-dev_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.deb (click to toggle) | |
|---|---|
NOTE: Copyright is the same as coot (coot_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.deb). Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: Coot
Upstream-Contact: https://github.com/pemsley/coot/issues
Source: https://github.com/pemsley/coot
Files-Excluded:
fonts
Files: *
Copyright: 2001-2007, The University of York
2007-2012, The University of Oxford
2012-2016, Medical Research Council
1999-2024, Paul Emsley
License: GPL-3+
Files: analysis/b-factor-histogram.cc
analysis/coot-daca.cc
analysis/daca.cc
analysis/daca.hh
analysis/improper-dihedrals.cc
analysis/mogul-interface.hh
analysis/rna-backbone.cc
analysis/rna-backbone.hh
analysis/test-align.cc
analysis/test-cablam.cc
analysis/test-mogul.cc
analysis/test-rna-backbone.cc
analysis/test-stats.cc
analysis/typed-distances.cc
analysis/typed-distances.hh
api/add-terminal-residue.cc
api/add-terminal-residue.hh
api/api-cell.hh
api/atom-pull.hh
api/blender-mesh.cc
api/blender-mesh.hh
api/bond-colour.hh
api/cell.hh
api/clipper-ccp4-map-file-wrapper.hh
api/colour-functions.cc
api/colour-functions.hh
api/coot-colour.hh
api/coot-molecule-backup.cc
api/coot-molecule-blender.cc
api/coot-molecule-bonds-instanced.cc
api/coot-molecule-bonds.hh
api/coot-molecule-change-chain-id.cc
api/coot-molecule-maps.cc
api/coot-molecule-merge-molecules.cc
api/coot-molecule-moltris.cc
api/coot-molecule-refine.cc
api/coot-molecule-replace-fragment.cc
api/coot-molecule-validation.cc
api/coot-molecule.cc
api/coot-molecule.hh
coords/graphical-bonds-container.hh
coords/graphics-line.hh
coords/loop-path.cc
coords/loop-path.hh
coords/phenix-geo-bonds.cc
coords/phenix-geo.cc
coords/phenix-geo.hh
coords/phi-psi-prob.cc
coords/phi-psi-prob.hh
coords/rama-plot-phi-psi.cc
coords/rama-plot-phi-psi.hh
coords/ramachandran-container.hh
coords/ramachandran-validation.cc
coords/ramachandran-validation.hh
coords/rotamer-container.hh
coords/rotamer-markup.cc
coords/test-phenix-geo.cc
coords/test-transform.cc
coords/torus-description.hh
coot-utils/3d-texture.cc
coot-utils/3d-texture.hh
coot-utils/amp-reso.hh
coot-utils/arc-info.hh
coot-utils/atom-tools.cc
coot-utils/atom-tools.hh
coot-utils/atom-tree.hh
coot-utils/atom-vertex.hh
coot-utils/blob-line.cc
coot-utils/blob-line.hh
coot-utils/bonded-atoms.cc
coot-utils/bonded-atoms.hh
coot-utils/bricks.cc
coot-utils/c-beta-deviations.cc
coot-utils/c-beta-deviations.hh
coot-utils/cablam-markup.cc
coot-utils/cablam-markup.hh
coot-utils/cis-peptide-info.hh
coot-utils/cmtz-interface.cc
coot-utils/cmtz-interface.hh
coot-utils/cod-db-access.cc
coot-utils/contact-info.cc
coot-utils/contact-info.hh
coot-utils/contacts-by-bricks.cc
coot-utils/contacts-by-bricks.hh
coot-utils/coot-least-squares.hh
coot-utils/cylinder-with-rotation-translation.cc
coot-utils/cylinder-with-rotation-translation.hh
coot-utils/cylinder.cc
coot-utils/cylinder.hh
coot-utils/diff-diff-map-peaks.cc
coot-utils/diff-diff-map-peaks.hh
coot-utils/emma.hh
coot-utils/exp-fit.cc
coot-utils/exp-fit.hh
coot-utils/fast-eigens.cc
coot-utils/fast-eigens.hh
coot-utils/fib-sphere.cc
coot-utils/fib-sphere.hh
coot-utils/find-pepflip-using-difference-map.cc
coot-utils/find-pepflip-using-difference-map.hh
coot-utils/find-water-baddies.cc
coot-utils/find-water-baddies.hh
coot-utils/fragment-container.cc
coot-utils/fragment-container.hh
coot-utils/g_triangle.hh
coot-utils/gltf-export.cc
coot-utils/glyco-tree.hh
coot-utils/helix-like.cc
coot-utils/helix-like.hh
coot-utils/jed-flip.cc
coot-utils/jed-flip.hh
coot-utils/lidia-core-functions.cc
coot-utils/lidia-core-functions.hh
coot-utils/make-cablam-like-stats.cc
coot-utils/map-index.hh
coot-utils/merge-C-and-N-terminii.cc
coot-utils/merge-C-and-N-terminii.hh
coot-utils/merge-atom-selections.cc
coot-utils/merge-atom-selections.hh
coot-utils/merge-molecules.cc
coot-utils/merge-molecules.hh
coot-utils/mmrrcc.cc
coot-utils/mtz-column-auto-read.hh
coot-utils/mutate.cc
coot-utils/oct.cc
coot-utils/oct.hh
coot-utils/parse-pisa.cc
coot-utils/parse-pisa.hh
coot-utils/pepflip-using-difference-map.cc
coot-utils/pepflip-using-difference-map.hh
coot-utils/plane-utils.cc
coot-utils/plane-utils.hh
coot-utils/polar-atoms.cc
coot-utils/polar-atoms.hh
coot-utils/positron.cc
coot-utils/positron.hh
coot-utils/prideout-octasphere.hh
coot-utils/reduce.cc
coot-utils/reduce.hh
coot-utils/secondary-structure-headers.cc
coot-utils/secondary-structure-headers.hh
coot-utils/segmap.cc
coot-utils/segmap.hh
coot-utils/sfcalc-genmap.hh
coot-utils/shape-types.hh
coot-utils/shapes.cc
coot-utils/shapes.hh
coot-utils/simple-mesh.cc
coot-utils/simple-mesh.hh
coot-utils/spherical-harmonics.cc
coot-utils/spherical-harmonics.hh
coot-utils/stack-and-pair.cc
coot-utils/stack-and-pair.hh
coot-utils/strand-fragments.cc
coot-utils/strand-fragments.hh
coot-utils/strand-like.hh
coot-utils/test-5-residue-fragments.cc
coot-utils/test-cod-atom-types-from-sm-cif.cc
coot-utils/test-convolute.cc
coot-utils/test-coot-probe.cc
coot-utils/test-diff-diff-map-peaks.cc
coot-utils/test-emma.cc
coot-utils/test-parse-pisa.cc
coot-utils/test-segmap.cc
coot-utils/vertex.hh
density-contour/gaussian-surface.cc
density-contour/gaussian-surface.hh
density-contour/occlusion.cc
density-contour/occlusion.hh
density-contour/test-gaussian-surface.cc
density-contour/test-occlusion.cc
density-contour/transfer-occlusions.hh
geometry/bonded-quad.hh
geometry/chem_mods.hh
geometry/cif-parse-mon-lib.cc
geometry/compare-dictionaries.cc
geometry/dict-mismatches.hh
geometry/dict-utils.cc
geometry/dict-utils.hh
geometry/dictionary-bond-distributions.cc
geometry/dreiding.cc
geometry/gphl-chem-comp-info.hh
geometry/hb-types.hh
geometry/hydrophobic.cc
geometry/hydrophobic.hh
geometry/intercept-3GP.cc
geometry/main-chain.cc
geometry/main-chain.hh
geometry/make-shelx-restraints.cc
geometry/match-results.hh
geometry/mol-utils-2.cc
geometry/mol-utils-2.hh
geometry/mol-utils.cc
geometry/mol-utils.hh
geometry/pdbe-chem-comp-atom-depiction.hh
geometry/pdbx-chem-comp-description-generator.hh
geometry/protein-donor-acceptors.cc
geometry/protein-donor-acceptors.hh
geometry/read-metals-json.cc
geometry/residue-and-atom-specs.cc
geometry/srs-interface.cc
geometry/srs-interface.hh
high-res/high-res.hh
ideal/coot-compare-residues.cc
ideal/crankshaft-test.cc
ideal/crankshaft.cc
ideal/crankshaft.hh
ideal/extra-restraints.hh
ideal/lv.cc
ideal/model-bond-deltas.cc
ideal/model-bond-deltas.hh
ideal/neutron.cc
ideal/new-linked-residue-t.hh
ideal/ng.cc
ideal/parallel-planes.cc
ideal/parallel-planes.hh
ideal/phi-psi.cc
ideal/phi-psi.hh
ideal/process-dfs-in-range.cc
ideal/process-dfs-in-range.hh
ideal/pull-restraint.cc
ideal/rama-types.hh
ideal/refinement-lights.hh
ideal/refinement-results-t.hh
ideal/simulated-annealing.cc
ideal/test-rama-plot.cc
ideal/torsion-bonds.cc
ideal/torsion-bonds.hh
ideal/trans-peptide.cc
ideal/write-png.cc
ideal/write-png.hh
ideal/zo-rama.cc
ideal/zo-rama.hh
lidia-core/atom-types.cc
lidia-core/get-residue.cc
lidia-core/get-residue.hh
lidia-core/neighbour-sorter.hh
lidia-core/svg-molecule.cc
lidia-core/svg-molecule.hh
lidia-core/test-lig-build.cc
lidia-core/third-neighbour-info-t.hh
lidia-core/use-rdkit.hh
ligand/ca-torsion-info.cc
ligand/ca-torsion-info.hh
ligand/dSFMT-params19937.h
ligand/joining-residues.cc
ligand/libres-tracer.cc
ligand/libres-tracer.hh
ligand/ligand-score-card.hh
ligand/map-point-cluster.hh
ligand/multi-peptide.hh
ligand/new-residue-by-3-phi-psi.cc
ligand/new-residue-by-3-phi-psi.hh
ligand/rama-rsr-extend-fragments.cc
ligand/rama-rsr-extend-fragments.hh
ligand/refine-isolated-chain.cc
ligand/refine-isolated-chain.hh
ligand/res-tracer.cc
ligand/scored-molecule.hh
ligand/scored-node.hh
ligand/side-chain-densities.cc
ligand/side-chain-densities.hh
ligand/side-chain.cc
ligand/side-chain.hh
ligand/smith-waterman.hh
ligand/test-tube-finder.cc
ligand/tube-finder.cc
ligand/tube-finder.hh
mini-mol/mol-hierarchy.cc
pli/flev-annotations.cc
pli/protein-ligand-interactions.hh
pli/sdf-interface-for-export.hh
pli/sdf-internal.hh
pli/specs.cc
pli/specs.hh
pyrogen/cairo-molecule.cc
pyrogen/cairo-molecule.hh
src/9.ssao.shader
src/9.ssao_blur.shader
src/9.ssao_geometry.shader
src/Basic.shader
src/HUDMesh.cc
src/HUDMesh.hh
src/HUDTextureMesh.cc
src/HUDTextureMesh.hh
src/Instanced-Markup-Mesh.cc
src/Instanced-Markup-Mesh.hh
src/LigandViewMesh.cc
src/LigandViewMesh.hh
src/LinesMesh.cc
src/LinesMesh.hh
src/Material.hh
src/Mesh-from-glTF.cc
src/Mesh-from-graphical-bonds-instanced.cc
src/Mesh-from-graphical-bonds.cc
src/Mesh.cc
src/Mesh.hh
src/Model.cc
src/Model.hh
src/Particle.cc
src/Particle.hh
src/Shader.cc
src/Shader.hh
src/TemplateMesh.hh
src/Texture.cc
src/Texture.hh
src/TextureMesh.cc
src/TextureMesh.hh
src/animated-ligand.hh
src/array-2d.hh
src/atom-label-info.hh
src/atom-label.shader
src/atom-overlaps.cc
src/atom-pull.hh
src/background-image.shader
src/blur-x.shader
src/blur-y.shader
src/blur.shader
src/boids.cc
src/boids.hh
src/bond-colour-mode.hh
src/boot-python.cc
src/c-interface-bonds.cc
src/c-interface-bonds.hh
src/c-interface-curlew.cc
src/c-interface-curlew.hh
src/c-interface-geometry-distortion.hh
src/c-interface-gui.hh
src/c-interface-image.cc
src/c-interface-ligand-search.hh
src/c-interface-ligands-widgets.hh
src/c-interface-mogul-scripting.cc
src/c-interface-refine.hh
src/c-interface-sequence.cc
src/c-interface-sequence.hh
src/camera-facing-quad-shader-for-testing.shader
src/cc-interface-alignment.cc
src/cc-interface-alignment.hh
src/cc-interface-graphics.cc
src/cc-interface-graphics.hh
src/cc-interface-image.hh
src/cc-interface-map-utils.cc
src/cc-interface-merge.cc
src/cc-interface-molecular-representation.cc
src/cc-interface-molecular-representation.hh
src/cc-interface-molecular-symmetry.cc
src/cc-interface-png.cc
src/cc-interface-scripting.cc
src/cc-interface-user-defined-atom-colours.cc
src/cc-interface-user-defined-atom-colours.hh
src/central-cube.shader
src/cfc-widgets.hh
src/cfc.cc
src/cfc.hh
src/change-dir.cc
src/change-dir.hh
src/clip-hybrid-atom.hh
src/clipper-ccp4-map-file-wrapper.hh
src/clipper-to-glm.hh
src/cmtz-interface-gui.hh
src/colour-functions.hh
src/colour-holder-to-glm.hh
src/coot-application.cc
src/coot-application.hh
src/coot-colour.cc
src/coot-phi-psi.cc
src/coot-phi-psi.hh
src/coot-setup-python.hh
src/coot-version.hh
src/create-menu-item-actions.cc
src/create-menu-item-actions.hh
src/crunch-model.hh
src/curl-utils.hh
src/curlew-gtk4.cc
src/curlew-gtk4.hh
src/curlew.h
src/data-pair-remover.hh
src/density-results-container-t.hh
src/depth-of-field.shader
src/draw-2.hh
src/draw-generic-display-objects.cc
src/draw-map-cap.shader
src/draw.cc
src/draw.hh
src/dynamic-validation.cc
src/dynamic-validation.hh
src/effects.shader
src/event-controller-callbacks.cc
src/event-controller-callbacks.hh
src/extra-distance-restraint-markup.hh
src/extra-distance-restraints.shader
src/extra-restraints-representation.hh
src/eyes.cc
src/eyes.hh
src/fit-loop-gui.cc
src/fit-loop-gui.hh
src/fit-loop.cc
src/fit-loop.hh
src/fixup-interface.h.sh
src/framebuffer.cc
src/framebuffer.hh
src/fresnel-settings.hh
src/ft-character.hh
src/gaussian-surface.cc
src/generic-vertex.hh
src/gensurf.hh
src/gl-rama-plot.cc
src/gl-rama-plot.hh
src/glarea_tick_function.hh
src/globularize.cc
src/graphical-molecule.cc
src/graphical-molecule.hh
src/graphics-info-defines-gtk4.cc
src/graphics-info-draw-models.cc
src/graphics-info-draw.cc
src/graphics-info-init.cc
src/graphics-info-intermediate.cc
src/graphics-info-opengl.cc
src/graphics-info-refine.cc
src/graphics-info-render-scene.cc
src/graphics-info-statics.cc
src/graphics-info-tick-function.cc
src/graphics-ligand-mesh-molecule.cc
src/graphics-ligand-mesh-molecule.hh
src/gtkglarea-rama-plot.hh
src/hud-bars.shader
src/hud-geometry-tooltip-text.shader
src/hud-image-texture.shader
src/hud-labels.shader
src/hud-lines.shader
src/hud-text.shader
src/idles.hh
src/init-from-gtkbuilder.cc
src/init-from-gtkbuilder.hh
src/init_coot_as_python_module.cc
src/init_coot_as_python_module.hh
src/instanced-meshes-for-shadow-map.shader
src/instanced-meshes-for-ssao.shader
src/instanced-meshes-with-shadows.shader
src/instanced-objects.shader
src/key-bindings.cc
src/key-bindings.hh
src/labelled-button-info.hh
src/ligand-check.hh
src/ligand-view.shader
src/lights-info.hh
src/lines-pulse.shader
src/lines.shader
src/make-a-dodec.cc
src/make-a-dodec.hh
src/map.shader
src/map_triangle.hh
src/matrix-utils.cc
src/matrix-utils.hh
src/meshed-generic-display-object.cc
src/meshed-generic-display-object.hh
src/meshed-particle-container.hh
src/meshes-for-shadow-map.shader
src/meshes-for-ssao.shader
src/meshes-with-shadows.shader
src/meshes.shader
src/model-as-mesh.shader
src/model-molecule-meshes.cc
src/model-molecule-meshes.hh
src/model.shader
src/mol-hierarchy.cc
src/mol-tri.hh
src/molecular-mesh-generator-mol-tris.cc
src/molecular-mesh-generator.cc
src/molecular-mesh-generator.hh
src/molecular-triangles-mesh.hh
src/molecule-class-info-alignment.cc
src/molecule-class-info-analysis.cc
src/molecule-class-info-bonds.cc
src/molecule-class-info-dots-internal.cc
src/molecule-class-info-geometry.cc
src/molecule-class-info-maps-2.cc
src/molecule-class-info-mol-tris.cc
src/molecule-class-info-molecular-symmetry.cc
src/molecule-class-info-string.cc
src/moleculestotriangles.shader
src/mtz-column-auto-read.hh
src/new-startup.cc
src/obj_loader.cc
src/obj_loader.h
src/old-event-callbacks.cc
src/old-generic-display-object.cc
src/old-generic-display-object.hh
src/outline-of-active-residue.shader
src/particles.shader
src/pick.hh
src/positron-plot.cc
src/pulse-data.hh
src/pumpkin.cc
src/pumpkin.hh
src/python-classes.cc
src/python-classes.hh
src/python-scripting-gui.hh
src/rail-points.hh
src/rama-balls.shader
src/rama-plot-axes-and-ticks.shader
src/rama-plot-phi-psi-markers.shader
src/rama-plot-phi-psi.cc
src/rama-plot-phi-psi.hh
src/rdkit-smiles.cc
src/read-cif.cc
src/read-molecule.hh
src/residue-markers-for-ssao.shader
src/residue-markers.shader
src/restore-these.hh
src/rotation-centre-cross-hairs-for-ssao.shader
src/rsr-functions.cc
src/rsr-functions.hh
src/screen.shader
src/screendump-tga.cc
src/screendump-tga.hh
src/setup-gui-components.cc
src/setup-gui-components.hh
src/shadow-map-image-texture.shader
src/simple-distance-object.hh
src/simple-refmac.cc
src/single-map-properties-dialog.cc
src/single-map-properties-dialog.hh
src/sound-mac.cc
src/sound.cc
src/sound.hh
src/spherical-density.cc
src/startup-utils.cc
src/startup-utils.hh
src/symmetry-atoms-lines.shader
src/template-python-function.cc
src/testing-2.cc
src/text-rendering-utils.cc
src/text-rendering-utils.hh
src/texture-meshes-for-ssao.shader
src/texture-meshes-shadow-map.shader
src/texture-meshes-with-shadows.shader
src/texture-meshes.shader
src/ud-colour-rule.hh
src/updating-coordinates-molecule-parameters.hh
src/updating-map-params.hh
src/validation.cc
src/validation.hh
src/vnc-vertex-to-generic-vertex.hh
src/widget-from-builder.cc
src/widget-from-builder.hh
src/widget-headers.hh
utils/dodec.cc
utils/dodec.hh
utils/split-indices.cc
utils/split-indices.hh
utils/test-logging.cc
utils/test-utils.cc
utils/threads.cc
utils/win-compat.cc
utils/win-compat.hh
validation-graphs/gtk4-test-sequence-view.cc
validation-graphs/gtk4-test-validation-graph.cc
validation-graphs/residue-validation-information.cc
validation-graphs/residue-validation-information.hh
validation-graphs/validation-graphs.cc
validation-graphs/validation-graphs.hh
validation-graphs/validation-information.cc
validation-graphs/validation-information.hh
Copyright: 2007, Medical Research Council
2011, Medical Research Council
2012, Medical Research Council
2012-2014, Medical Research Council
2013, 2015, Medical Research Council
2013, Medical Research Council
2014, Medical Research Council
2014-2015, Medical Research Council
2015, Medical Research Council
2016, Medical Research Council
2017, Medical Research Council
2018, Medical Research Council
2019, Medical Research Council
2020, Medical Research Council
2021, Medical Research Council
2022, Medical Research Council
2023, Medical Research Council
2024, Medical Research Council
License: LGPL-3+
Files: MoleculesToTriangles/CXXClasses/AtomPropertyRampColorRule.cpp
MoleculesToTriangles/CXXClasses/AtomPropertyRampColorRule.h
MoleculesToTriangles/CXXClasses/BallsPrimitive.cpp
MoleculesToTriangles/CXXClasses/BallsPrimitive.h
MoleculesToTriangles/CXXClasses/BondsPrimitive.cpp
MoleculesToTriangles/CXXClasses/BondsPrimitive.h
MoleculesToTriangles/CXXClasses/BoostWrappers.cpp
MoleculesToTriangles/CXXClasses/BoxSectionPrimitive.cpp
MoleculesToTriangles/CXXClasses/BoxSectionPrimitive.h
MoleculesToTriangles/CXXClasses/CXXMatrix.cpp
MoleculesToTriangles/CXXClasses/CXXMatrix.h
MoleculesToTriangles/CXXClasses/Callbacks.h
MoleculesToTriangles/CXXClasses/Camera.cpp
MoleculesToTriangles/CXXClasses/Camera.h
MoleculesToTriangles/CXXClasses/CameraPort.cpp
MoleculesToTriangles/CXXClasses/CameraPort.h
MoleculesToTriangles/CXXClasses/ColorNamesMap.h
MoleculesToTriangles/CXXClasses/ColorRule.cpp
MoleculesToTriangles/CXXClasses/ColorRule.h
MoleculesToTriangles/CXXClasses/ColorScheme.cpp
MoleculesToTriangles/CXXClasses/ColorScheme.h
MoleculesToTriangles/CXXClasses/CompoundSelection.cpp
MoleculesToTriangles/CXXClasses/CompoundSelection.h
MoleculesToTriangles/CXXClasses/CylinderPoint.cpp
MoleculesToTriangles/CXXClasses/CylinderPoint.h
MoleculesToTriangles/CXXClasses/CylindersPrimitive.cpp
MoleculesToTriangles/CXXClasses/CylindersPrimitive.h
MoleculesToTriangles/CXXClasses/DemoApp.cpp
MoleculesToTriangles/CXXClasses/DirectedPositionedEntity.cpp
MoleculesToTriangles/CXXClasses/DirectedPositionedEntity.h
MoleculesToTriangles/CXXClasses/DiscreteSegment.cpp
MoleculesToTriangles/CXXClasses/DiscreteSegment.h
MoleculesToTriangles/CXXClasses/DishyBase.cpp
MoleculesToTriangles/CXXClasses/DishyBase.h
MoleculesToTriangles/CXXClasses/DisplayPrimitive.cpp
MoleculesToTriangles/CXXClasses/DisplayPrimitive.h
MoleculesToTriangles/CXXClasses/ElectrostaticColorScheme.cpp
MoleculesToTriangles/CXXClasses/ElectrostaticColorScheme.hpp
MoleculesToTriangles/CXXClasses/FlatFanPrimitive.cpp
MoleculesToTriangles/CXXClasses/FlatFanPrimitive.h
MoleculesToTriangles/CXXClasses/GLIndexType.h
MoleculesToTriangles/CXXClasses/Light.cpp
MoleculesToTriangles/CXXClasses/Light.h
MoleculesToTriangles/CXXClasses/LinesPrimitive.cpp
MoleculesToTriangles/CXXClasses/LinesPrimitive.h
MoleculesToTriangles/CXXClasses/MolecularRepresentation.cpp
MoleculesToTriangles/CXXClasses/MolecularRepresentation.h
MoleculesToTriangles/CXXClasses/MolecularRepresentationInstance.cpp
MoleculesToTriangles/CXXClasses/MolecularRepresentationInstance.h
MoleculesToTriangles/CXXClasses/MyMolecule.cpp
MoleculesToTriangles/CXXClasses/MyMolecule.h
MoleculesToTriangles/CXXClasses/NRStuff.cpp
MoleculesToTriangles/CXXClasses/NRStuff.h
MoleculesToTriangles/CXXClasses/Polyhedron.cpp
MoleculesToTriangles/CXXClasses/Polyhedron.h
MoleculesToTriangles/CXXClasses/PositionedEntity.cpp
MoleculesToTriangles/CXXClasses/PositionedEntity.h
MoleculesToTriangles/CXXClasses/Renderer.cpp
MoleculesToTriangles/CXXClasses/Renderer.h
MoleculesToTriangles/CXXClasses/RendererGL.cpp
MoleculesToTriangles/CXXClasses/RendererGL.h
MoleculesToTriangles/CXXClasses/RendererGLSL.cpp
MoleculesToTriangles/CXXClasses/RendererGLSL.hpp
MoleculesToTriangles/CXXClasses/Representation.cpp
MoleculesToTriangles/CXXClasses/Representation.h
MoleculesToTriangles/CXXClasses/RepresentationInstance.cpp
MoleculesToTriangles/CXXClasses/RepresentationInstance.h
MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.cpp
MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h
MoleculesToTriangles/CXXClasses/SceneSetup.cpp
MoleculesToTriangles/CXXClasses/SceneSetup.h
MoleculesToTriangles/CXXClasses/SecondaryColorScheme.cpp
MoleculesToTriangles/CXXClasses/SecondaryColorScheme.h
MoleculesToTriangles/CXXClasses/SolidColorRule.cpp
MoleculesToTriangles/CXXClasses/SolidColorRule.h
MoleculesToTriangles/CXXClasses/SpherePrimitive.cpp
MoleculesToTriangles/CXXClasses/SpherePrimitive.h
MoleculesToTriangles/CXXClasses/SticksPrimitive.cpp
MoleculesToTriangles/CXXClasses/SticksPrimitive.h
MoleculesToTriangles/CXXClasses/SurfacePrimitive.cpp
MoleculesToTriangles/CXXClasses/SurfacePrimitive.h
MoleculesToTriangles/CXXClasses/VertexColorNormalPrimitive.cpp
MoleculesToTriangles/CXXClasses/VertexColorNormalPrimitive.h
MoleculesToTriangles/CXXClasses/lfit.h
MoleculesToTriangles/CXXClasses/oglPolyhedron.cpp
MoleculesToTriangles/CXXClasses/oglPolyhedron.h
MoleculesToTriangles/CXXSurface/CXXAlloc.h
MoleculesToTriangles/CXXSurface/CXXBall.cpp
MoleculesToTriangles/CXXSurface/CXXBall.h
MoleculesToTriangles/CXXSurface/CXXChargeTable.cpp
MoleculesToTriangles/CXXSurface/CXXChargeTable.h
MoleculesToTriangles/CXXSurface/CXXCircle.cpp
MoleculesToTriangles/CXXSurface/CXXCircle.h
MoleculesToTriangles/CXXSurface/CXXCircleNode.cpp
MoleculesToTriangles/CXXSurface/CXXCircleNode.h
MoleculesToTriangles/CXXSurface/CXXCoord.cpp
MoleculesToTriangles/CXXSurface/CXXCoord.h
MoleculesToTriangles/CXXSurface/CXXCreator.cpp
MoleculesToTriangles/CXXSurface/CXXCreator.h
MoleculesToTriangles/CXXSurface/CXXException.cpp
MoleculesToTriangles/CXXSurface/CXXException.h
MoleculesToTriangles/CXXSurface/CXXFFTSolventMap.h
MoleculesToTriangles/CXXSurface/CXXFortranFile.cpp
MoleculesToTriangles/CXXSurface/CXXFortranFile.h
MoleculesToTriangles/CXXSurface/CXXMatrix4x4.h
MoleculesToTriangles/CXXSurface/CXXNewHood.cpp
MoleculesToTriangles/CXXSurface/CXXNewHood.h
MoleculesToTriangles/CXXSurface/CXXPointyBit.h
MoleculesToTriangles/CXXSurface/CXXQADSurface.cpp
MoleculesToTriangles/CXXSurface/CXXQADSurface.h
MoleculesToTriangles/CXXSurface/CXXQADSurfaceStaticData.cpp
MoleculesToTriangles/CXXSurface/CXXSpace.cpp
MoleculesToTriangles/CXXSurface/CXXSpace.h
MoleculesToTriangles/CXXSurface/CXXSphereElement.cpp
MoleculesToTriangles/CXXSurface/CXXSphereElement.h
MoleculesToTriangles/CXXSurface/CXXSphereFlatTriangle.h
MoleculesToTriangles/CXXSurface/CXXSphereNode.cpp
MoleculesToTriangles/CXXSurface/CXXSphereNode.h
MoleculesToTriangles/CXXSurface/CXXSphereTriangle.cpp
MoleculesToTriangles/CXXSurface/CXXSphereTriangle.h
MoleculesToTriangles/CXXSurface/CXXSphereTriangleEdge.cpp
MoleculesToTriangles/CXXSurface/CXXSphereTriangleEdge.h
MoleculesToTriangles/CXXSurface/CXXSurface.cpp
MoleculesToTriangles/CXXSurface/CXXSurface.h
MoleculesToTriangles/CXXSurface/CXXSurfaceMaker.cpp
MoleculesToTriangles/CXXSurface/CXXSurfaceMaker.h
MoleculesToTriangles/CXXSurface/CXXSurfaceVertex.cpp
MoleculesToTriangles/CXXSurface/CXXSurfaceVertex.h
MoleculesToTriangles/CXXSurface/CXXTorusElement.cpp
MoleculesToTriangles/CXXSurface/CXXTorusElement.h
MoleculesToTriangles/CXXSurface/CXXTorusNode.cpp
MoleculesToTriangles/CXXSurface/CXXTorusNode.h
MoleculesToTriangles/CXXSurface/CXXTorusTriangle.h.h
MoleculesToTriangles/CXXSurface/CXXTriangle.cpp
MoleculesToTriangles/CXXSurface/CXXTriangle.h
MoleculesToTriangles/CXXSurface/CXXUtils.cpp
MoleculesToTriangles/CXXSurface/CXXUtils.h
MoleculesToTriangles/CXXSurface/CXXVCN.cpp
MoleculesToTriangles/CXXSurface/CXXVCN.h
MoleculesToTriangles/CXXSurface/TokenIterator.h
Copyright: 2009, Martin Noble, University of Oxford
2010, Martin Noble, University of Oxford
2011, Martin Noble, University of Oxford
2012, Martin Noble, University of Oxford
2016, Martin Noble, University of Oxford
2017, Martin Noble, University of Oxford
License: LGPL-3+
Files: ccp4mg-utils/mgtree.cc
ccp4mg-utils/mgtree.h
ccp4mg-utils/mmut/mman_base.cc
ccp4mg-utils/mmut/mman_base.h
ccp4mg-utils/mmut/mman_manager.cc
ccp4mg-utils/mmut/mman_manager.h
ccp4mg-utils/mmut/mmut_basepairs.cc
ccp4mg-utils/mmut/mmut_basepairs.h
ccp4mg-utils/mmut/mmut_bonds.cc
ccp4mg-utils/mmut/mmut_bonds.h
ccp4mg-utils/mmut/mmut_colour.cc
ccp4mg-utils/mmut/mmut_colour.h
ccp4mg-utils/mmut/mmut_connectivity.cc
ccp4mg-utils/mmut/mmut_connectivity.h
ccp4mg-utils/mmut/mmut_contact.cc
ccp4mg-utils/mmut/mmut_contact.h
ccp4mg-utils/mmut/mmut_hbond.cc
ccp4mg-utils/mmut/mmut_hbond.h
ccp4mg-utils/mmut/mmut_lipids.h
ccp4mg-utils/mmut/mmut_manager.cc
ccp4mg-utils/mmut/mmut_manager.h
ccp4mg-utils/mmut/mmut_morph.h
ccp4mg-utils/mmut/mmut_nma.cc
ccp4mg-utils/mmut/mmut_nma.h
ccp4mg-utils/mmut/mmut_sasarea.cc
ccp4mg-utils/mmut/mmut_sasarea.h
ccp4mg-utils/mmut/mmut_sbase.cc
ccp4mg-utils/mmut/mmut_sbase.h
ccp4mg-utils/mmut/mmut_secstr.cc
ccp4mg-utils/mmut/mmut_secstr.h
ccp4mg-utils/mmut/mmut_spline.cc
ccp4mg-utils/mmut/mmut_util.cc
ccp4mg-utils/mmut/mmut_util.h
ccp4mg-utils/mmut/splineinfo.h
ccp4mg-utils/pygl/atom_util.cc
ccp4mg-utils/pygl/atom_util.h
ccp4mg-utils/pygl/bezier.cc
ccp4mg-utils/pygl/billboard.cc
ccp4mg-utils/pygl/build_tree_primitives.cc
ccp4mg-utils/pygl/catmull.cc
ccp4mg-utils/pygl/catmull.h
ccp4mg-utils/pygl/cbuild.h
ccp4mg-utils/pygl/cdisplayobject.cc
ccp4mg-utils/pygl/cdisplayobject.h
ccp4mg-utils/pygl/cprimitive.cc
ccp4mg-utils/pygl/cprimitive.h
ccp4mg-utils/pygl/font_info.cc
ccp4mg-utils/pygl/font_info.h
ccp4mg-utils/pygl/font_util.cc
ccp4mg-utils/pygl/font_util.h
ccp4mg-utils/pygl/freetype_font.cc
ccp4mg-utils/pygl/freetype_font.h
ccp4mg-utils/pygl/help.cc
ccp4mg-utils/pygl/help.h
ccp4mg-utils/pygl/lincrv.h
ccp4mg-utils/pygl/psutil.cc
ccp4mg-utils/pygl/psutil.h
ccp4mg-utils/pygl/rgbreps.cc
ccp4mg-utils/pygl/rgbreps.h
ccp4mg-utils/pygl/sphere.cc
ccp4mg-utils/pygl/sphere.h
ccp4mg-utils/pygl/sphere_1.h
ccp4mg-utils/pygl/sphere_2.h
ccp4mg-utils/pygl/sphere_3.h
ccp4mg-utils/pygl/splineset.cc
ccp4mg-utils/pygl/subdivide.cc
ccp4mg-utils/pygl/subdivide.h
ccp4mg-utils/pygl/symmetry.cc
ccp4mg-utils/pygl/symmetry.h
ccp4mg-utils/pygl/text.cc
ccp4mg-utils/pygl/texture.cc
ccp4mg-utils/pygl/texture.h
ccp4mg-utils/pygl/win_font.cc
ccp4mg-utils/pygl/win_font.h
ccp4mg-utils/pygl/x11_font.cc
ccp4mg-utils/pygl/x11_font.h
ccp4mg-utils/pygl/zsortps.cc
ccp4mg-utils/util/CParamsManager.cc
ccp4mg-utils/util/CParamsManager.h
ccp4mg-utils/util/cartesian.cc
ccp4mg-utils/util/cartesian.h
ccp4mg-utils/util/connect.cc
ccp4mg-utils/util/connect.h
ccp4mg-utils/util/geomutil.cc
ccp4mg-utils/util/geomutil.h
ccp4mg-utils/util/matrix.cc
ccp4mg-utils/util/matrix.h
ccp4mg-utils/util/mginterrupt.cc
ccp4mg-utils/util/mginterrupt.h
ccp4mg-utils/util/mgtree.cc
ccp4mg-utils/util/mgtree.h
ccp4mg-utils/util/mgutil.cc
ccp4mg-utils/util/mgutil.h
ccp4mg-utils/util/plane.cc
ccp4mg-utils/util/plane.h
ccp4mg-utils/util/quat.cc
ccp4mg-utils/util/quat.h
ccp4mg-utils/util/redirect.cc
ccp4mg-utils/util/volume.cc
ccp4mg-utils/util/volume.h
Copyright: 2001-2008, University of York, CCLRC
License: LGPL-3
Files: api/filo-tests.cc
api/filo-tests.hh
coot-utils/coot-h-bonds.hh
coot-utils/coot-hole.hh
coot-utils/coot-lsq-types.h
coot-utils/elastic.cc
coot-utils/elastic.hh
coot-utils/helix-analysis.cc
coot-utils/helix-analysis.hh
coot-utils/read-sm-cif.hh
coot-utils/test-elastic.cc
coot-utils/test-h-bonds.cc
coot-utils/test-hole.cc
coot-utils/test-morph.cc
coot-utils/xmap-stats.hh
geometry/lbg-graph.cc
geometry/lbg-graph.cc-m
geometry/lbg-graph.hh
geometry/test-read-components.cc
ligand/chi-angles-autogen.cc
ligand/primitive-chi-angles.cc
ligand/primitive-chi-angles.hh
ligand/read-dunbrack.awk
ligand/richardson-rotamer.cc
ligand/richardson-rotamers.cc
skeleton/BuildCas.h
skeleton/dm-utils.cc
skeleton/graphical_skel.cc
skeleton/graphical_skel.h
src/add-c-extern.sh
src/blank.cc
src/c-inner-main.h
src/c-interface-ligands-swig.hh
src/c-interface-wii.cc
src/canvas-fixes.hh
src/cc-interface-mogul.hh
src/cmtz-interface.hh
src/command-arg.hh
src/command-line.hh
src/coot-align.cc
src/coot-align.hh
src/coot-colour.hh
src/coot-database.hh
src/coot-fileselections.h
src/coot-glue.hh
src/coot-hydrogens.cc
src/coot-hydrogens.hh
src/coot-nomenclature.hh
src/coot-preferences.h
src/coot-references.h
src/coot-render.hh
src/coot.i
src/fix-nomenclature.cc
src/flev.hh
src/get-residue.cc
src/get-residue.hh
src/gl-bits.hh
src/gl-matrix.cc
src/graphics-info-network.cc
src/graphics-info-scripting.cc
src/gtk-manual.hh
src/gtk-widget-conversion-utils.cc
src/gtk-widget-conversion-utils.h
src/guile-fixups.h
src/history_list.hh
src/interface.c
src/interface.h
src/lbg-callbacks-outer.cc
src/lbg-interface.hh
src/mmcif-sfs-to-mtz-main.cc
src/molecule-class-info-dots.cc
src/molecule-class-info.h
src/named-rotamer-score.hh
src/pisa-interface.hh
src/post-glade
src/post-gtk2-glade.sh
src/protein_db-interface.cc
src/protein_db-interface.hh
src/restraints-editor-c.h
src/rotate-translate-modes.hh
src/sdf-interface.hh
src/sdf-internal.hh
src/select-atom-info.hh
src/seq-view-interface.c
src/seq-view-interface.h
src/support-gtk2-extras.c
src/support.c
src/test-chol.cc
src/test-lbg-graph.cc
src/testing-scm.cc
src/testing-scm.hh
src/triangle-extras.h
src/user-mods.cc
src/user-mods.hh
src/xmap-utils.cc
src/xmap-utils.h
Copyright: 2007, University of York
2008, University of York
2009, University of York
2010, University of York
2011, University of York
2012, University of York
2023, University of York
License: LGPL-3+
Files: build/CalphaBuild.cc
build/CalphaBuild.hh
build/testcabuild.cc
coords/Bond_lines_ext.cc
coords/Cartesian.cc
coords/Cartesian.h
coords/Makefile.am
coords/coot-close.cc
coords/coot-close.hh
coords/cos-sin.cc
coords/cos-sin.h
coords/mmdb-crystal.cc
coords/mmdb-crystal.h
coords/mmdb-extras.cc
coords/mmdb-extras.h
coords/mmdb.hh
coords/utils.cc
coords/utils.h
density-contour/density-contour-triangles.cc
density-contour/density-contour-triangles.hh
geometry/Makefile.am
geometry/Makefile.simple
ideal/Makefile.am
ideal/lograma.cpp
ideal/lograma.h
ideal/logramatest.cpp
ideal/molmantest.cc
ideal/pepflip.hh
ideal/regularize-minimol.cc
ideal/regularize-minimol.hh
ideal/test-indexing.cc
ideal/test-indexing.hh
ideal/with-geometry.cc
pyrogen/pyrogen-swig.i
skeleton/dm-utils.h
src/align.cc
src/c-inner-main.c
src/c-interface-gtk2.cc
src/c-interface-mmdb.hh
src/c-interface-python.cc
src/c-interface-python.hh
src/coot_pythonmodule.cc
src/density-score-by-residue-src.cc
src/geometry-graphs.cc
src/geometry-graphs.hh
src/gl-matrix.h
src/graphics-info-lsq.cc
src/graphics-info-pick.cc
src/graphics-info-preferences.cc
src/graphics-info-superpose.cc
src/molecule-class-info-kdc.cc
src/molecule-class-info-ribbons.cc
src/molecule-class-info-surface.cc
src/molecule-class-info-widget-work.cc
src/pick.cc
src/positioned-widgets.h
src/rama_mousey.cc
src/read-phs.h
src/sequence-view.cc
src/sequence-view.hh
utils/Makefile.am
utils/atomic-numbers.cc
utils/coot-fasta.hh
utils/coot-utils.hh
Copyright: 2001-2003, 2006, The University of York
2001-2006, The University of York
2001-2007, The University of York
2002, The University of York
2002-2003, The University of York
2002-2004, The University of York
2002-2005, The University of York
2002-2006, The University of York
2002-2007, The University of York
2004, 2006, The University of York
2004, The University of York
2004-2005, The University of York
2004-2006, The University of York
2005, The University of York
2005-2006, The University of York
2006, The University of York
2007, The University of York
2008, The University of York
2011, The University of York
2014, The University of York
2020, The University of York
License: LGPL-3+
Files: analysis/fraction_stats.py
analysis/mogul.cc
analysis/peptide-projection.cc
analysis/stats.cc
analysis/stats.hh
api/Makefile.am
api/coot-colour.cc
canyon/canyon-points.scm
canyon/canyon.cc
canyon/canyon.hh
canyon/quaternion.cc
coot-utils/atom-overlaps.cc
coot-utils/atom-overlaps.hh
coot-utils/coot-density-stats.hh
coot-utils/dictionary-atom-types.cc
coot-utils/slurp-map.cc
coot-utils/slurp-map.hh
coot-utils/test-chem-feat.cc
coot-utils/test-cod-atom-types.cc
coot-utils/test-spherical.cc
lidia-core/bond-record-container-t.cc
lidia-core/bond-record-container-t.hh
lidia-core/bond-table-record-t.cc
lidia-core/bond-table-record-t.hh
lidia-core/cod-atom-type-t.cc
lidia-core/cod-atom-type-t.hh
lidia-core/cod-atom-types.cc
lidia-core/cod-atom-types.hh
lidia-core/cod-types.cc
lidia-core/cod-types.hh
lidia-core/primes.hh
lidia-core/test-fei-vs-mine.py
ligand/ligand-percentiles.cc
ligand/ligands-db.cc
ligand/ligands-db.hh
ligand/make-ligands-db.cc
ligand/smith-waterman.cc
ligand/test-trace.cc
ligand/trace-2.cc
ligand/trace.cc
ligand/trace.hh
man/coot-compare-dictionaries.man
man/coot-mini-rsr.man
man/coot.man
man/findligand.man
man/findwaters.man
pli/Makefile.am
pli/pi-stacking.hh
pyrogen/mmff-restraints.cc
pyrogen/mmff-restraints.hh
python/coot_chemical_feature_clusters.py
python/ligand_validation_sliders.py
scheme/3d-generator-import.scm
scheme/contact-score-isolated-ligand.scm
scheme/dictionary-generators.scm
scheme/enhanced-ligand.scm
scheme/gui-add-linked-cho.scm
scheme/gui-hole.scm
scheme/gui-ligand-sliders.scm
scheme/gui-prosmart.scm
scheme/ligand-check.scm
scheme/run-mogul.scm
Copyright: 2010, Medical Research Council
2012-2014, Medical Research Council
2013, Medical Research Council
2014, Medical Research Council
2014-2015, Medical Research Council
2015, Medical Research Council
2016, Medical Research Council
2017, Medical Research Council
2018, Medical Research Council
2019, Medical Research Council
2020, Medical Research Council
2021, Medical Research Council
License: GPL-3+
Files: Makefile.am
analysis/Makefile.am
autogen.sh
build/Makefile.am
compat/coot-sysdep.h
coot-utils/atom-selection-container.cc
coot-utils/atom-selection-container.hh
coot-utils/coot-coord-utils-glyco.cc
coot-utils/coot-map-heavy.hh
coot-utils/coot-shelx.hh
coot-utils/coot-trim.hh
coot-utils/peak-search.hh
db-main/db-main.cc
db-main/db-main.hh
db-main/db-strands.cc
db-main/db-strands.hh
db-main/testdbmain.cc
density-contour/Makefile.am
high-res/Makefile.am
high-res/coot-atom-graph.hh
high-res/coot-node-info.hh
high-res/globularize.cc
high-res/trace-high-res.cc
ligand/chi-angles.cc
ligand/chi-angles.hh
ligand/dunbrack.cc
ligand/dunbrack.hh
ligand/fast-ss-search.hh
ligand/find-waters.cc
ligand/helix-placement.cc
ligand/helix-placement.hh
ligand/monomer-utils.cc
ligand/monomer-utils.hh
ligand/test-fffear-in-coot.cc
ligand/test-helix-placement.cc
ligand/test-random.cc
ligand/wligand.hh
macros/Makefile.am
macros/clipper.m4
macros/coot-database.m4
macros/coot-windows.m4
macros/glut.m4
macros/guile-gtk.m4
macros/with-guile.m4
mini-mol/Makefile.am
mini-mol/atom-quads.cc
mini-mol/mini-mol-utils.cc
mini-mol/mini-mol-utils.hh
mini-mol/mini-mol.hh
mini-mol/testminimol.cc
scheme/coot-lsq.scm
scheme/fitting.scm
scheme/group-settings.scm
scheme/refmac.scm
scheme/tips-gui.scm
setup/coot.csh.in
setup/coot.sh.in
shell-utils/shell-copyright-template.sh
skeleton/BuildCas.cc
skeleton/Makefile.am
Copyright: 2001-2003, 2006, The University of York
2001-2003, The University of York
2001-2004, 2006, The University of York
2001-2007, The University of York
2002, The University of York
2002-2003, 2006, The University of York
2002-2004, The University of York
2002-2005, The University of York
2002-2006, The University of York
2003, The University of York
2003-2004, 2006-2007, The University of York
2003-2004, The University of York
2004, 2006, The University of York
2004, The University of York
2004-2005, The University of York
2004-2006, The University of York
2004-2007, The University of York
2005, The University of York
2005-2006, The University of York
2005-2007, The University of York
2006, The University of York
2007, The University of York
2008, The University of York
2009, The University of York
2011, The University of York
License: GPL-3+
Files: rcrane/__init__.py
rcrane/about.py
rcrane/bondLength.py
rcrane/buildInitSugar.py
rcrane/buildPhosOxy.py
rcrane/calcCoords.py
rcrane/chain.py
rcrane/citationPopup.py
rcrane/coot_gui_adapter.py
rcrane/coot_utils_adapter.py
rcrane/extendChain.py
rcrane/guiUtils.py
rcrane/installRCrane.py
rcrane/launch.py
rcrane/linearInterp.py
rcrane/menu.py
rcrane/nextPhos.py
rcrane/nucleotide.py
rcrane/phenixRestraints.py
rcrane/preLaunchCheck.py
rcrane/pseudoMolecule.py
rcrane/pseudoPredictor.py
rcrane/puckerList.py
rcrane/reportInputErrors.py
rcrane/reviewSuitesGui.py
rcrane/rotData.py
rcrane/rotamerSeq.py
rcrane/rotamerize.py
rcrane/safelog.py
rcrane/selectMapDialog.py
rcrane/settings.py
rcrane/smoothProb.py
rcrane/stats.py
rcrane/strucCalc.py
rcrane/suite.py
rcrane/thetaEtaPredictor.py
rcrane/traceGui.py
Copyright: 2010, Kevin Keating
2010-2011, 2102, Kevin Keating
2010-2011, Kevin Keating
2010-2012, Kevin Keating
2011, Kevin Keating
2011-2012, Kevin Keating
2012, Kevin Keating
License: ECL-2.0
Files: geometry/cif-parse-link.cc
geometry/cif-parse.cc
geometry/dictionary-residue.cc
geometry/glyco-tools.cc
geometry/link.cc
geometry/protein-geometry.cc
geometry/protein-geometry.hh
ideal/chi-squareds.cc
ideal/chirals.cc
ideal/distortion.cc
ideal/flanking.cc
ideal/gradients.cc
ideal/link-restraints.cc
ideal/make-restraints.cc
ideal/mini-rsr.cc
ideal/mods.cc
ideal/simple-restraint.cc
ideal/simple-restraint.hh
src/Makefile.am
src/c-interface-gui.cc
src/c-interface-ligands-gui.cc
src/c-interface-ligands.cc
src/c-interface-maps.cc
src/c-interface-ncs.cc
src/c-interface-preferences.cc
src/c-interface-waters-gui.cc
src/c-interface-waters.cc
src/generic-objects.cc
src/glade-callbacks-main-window.cc
src/glade-callbacks-preferences.cc
src/glade-callbacks-shader-settings.cc
src/glade-callbacks.cc
src/graphics-info-graphs.cc
src/main.cc
src/molecule-class-info-ncs.cc
src/molecule-class-info-other.cc
Copyright: 2001-2007, The University of York
2002-2003, The University of York
2002-2005, The University of York
2002-2006, The University of York
2002-2007, The University of York
2003-2004, 2007, The University of York
2003-2006, The University of York
2004-2005, The University of York
2004-2007, The University of York
2005-2006, The University of York
2007, 2009, 2011-2012, The University of Oxford
2007, 2012, The University of Oxford
2007, The University of Oxford
2007, The University of York
2007-2008, The University of Oxford
2007-2009, The University of Oxford
2007-2012, The University of Oxford
2008, 2010, The University of Oxford
2008, The University of Oxford
2008-2009, 2011-2012, The University of Oxford
2008-2009, The University of Oxford
2008-2010, The University of Oxford
2008-2012, The University of Oxford
2009, The University of Oxford
2012-2015, Medical Research Council
2013, 2015-2016, Medical Research Council
2013, Medical Research Council
2013-2014, Medical Research Council
2013-2015, 2018, 2020-2021, Medical Research Council
2013-2015, Medical Research Council
2013-2016, Medical Research Council
2014, Medical Research Council
2014-2015, Medical Research Council
2014-2016, Medical Research Council
2015-2016, Medical Research Council
2016, Medical Research Council
License: LGPL-3+
Files: coot-utils/voidp-buffer.hh
layla/generators.cpp
layla/generators.hpp
layla/layla_embedded.cpp
layla/layla_embedded.hpp
layla/ligand_editor_canvas.cpp
layla/ligand_editor_canvas.hpp
layla/ligand_editor_canvas/core.cpp
layla/ligand_editor_canvas/core.hpp
layla/ligand_editor_canvas/model.cpp
layla/ligand_editor_canvas/model.hpp
layla/ligand_editor_canvas/render.cpp
layla/ligand_editor_canvas/render.hpp
layla/ligand_editor_canvas/tools.cpp
layla/ligand_editor_canvas/tools.hpp
layla/main.cpp
layla/notifier.cpp
layla/notifier.hpp
layla/python_utils.cpp
layla/python_utils.hpp
layla/signals.cpp
layla/state.cpp
layla/state.hpp
layla/ui.cpp
layla/ui.hpp
layla/utils.cpp
layla/utils.hpp
lhasa/embind.cpp
lhasa/embind.hpp
lhasa/glog_replacement.cpp
lhasa/glog_replacement.hpp
lhasa/lhasa.cpp
lhasa/lhasa.hpp
Copyright: 2023, Global Phasing Ltd.
License: GPL-3+
Files: cootaneer/buccaneer-lib.cpp
cootaneer/buccaneer-lib.h
cootaneer/buccaneer-prot.cpp
cootaneer/buccaneer-prot.h
cootaneer/buccaneer-sequence.cpp
cootaneer/buccaneer-sequence.h
cootaneer/cootaneer-demo.cpp
cootaneer/cootaneer-sequence.cpp
cootaneer/cootaneer-sequence.h
cootilus/cootilus-build.cpp
cootilus/cootilus-build.h
cootilus/cootilus-demo.cpp
cootilus/nautilus-join.cpp
cootilus/nautilus-join.h
cootilus/nautilus-ss-find.cpp
cootilus/nautilus-ss-find.h
cootilus/nautilus-target.cpp
cootilus/nautilus-target.h
cootilus/nautilus-tools.cpp
cootilus/nautilus-tools.h
cootilus/nucleicacid_db.cpp
cootilus/nucleicacid_db.h
protein_db/protein_db.cpp
protein_db/protein_db.h
protein_db/protein_db_utils.cpp
protein_db/protein_db_utils.h
protein_db/rna_db.cpp
protein_db/rna_db.h
Copyright: 2002-2006, Kevin Cowtan
2003-2006, Kevin Cowtan
2006, Kevin Cowtan
2008-2009, Kevin Cowtan
2011, Kevin Cowtan
2012, Kevin Cowtan
License: LGPL-3+
Files: coot-utils/coot-coord-utils-nucleotides.cc
coot-utils/coot-h-bonds.cc
coot-utils/lsq-improve.cc
coot-utils/lsq-improve.hh
lidia-core/lbg-molfile.cc
lidia-core/lbg-molfile.hh
lidia-core/lbg-shared.cc
lidia-core/lbg-shared.hh
lidia-core/lig-build.cc
lidia-core/rdkit-interface.hh
ligand/dipole.cc
ligand/dipole.hh
ligand/rotamer-tables.cc
macros/libglade.m4
mini-mol/atom-quads.hh
pli/flev-annotations.hh
pli/protein-ligand-interactions.cc
pli/sdf-interface.hh
protein_db/Makefile.am
rama-data/Makefile.am
scheme/clear-backup.scm
src/c-interface-view.cc
Copyright: 2007, The University of Oxford
2008, The University of Oxford
2008-2009, The University of Oxford
2009, The University of Oxford
2010, The University of Oxford
2010-2011, The University of Oxford
2010-2012, The University of Oxford
2011, The University of Oxford
2012, The University of Oxford
License: GPL-3+
Files: geometry/energy-lib.cc
pyrogen/atom_types.cc
src/additional-representation.hh
src/atom-attribute.hh
src/atom-name-bits.hh
src/atom-selection.hh
src/c-interface-generic-objects.h
src/c-interface-mogul.cc
src/c-interface-preferences.h
src/coot-setup-python.cc
src/drag-and-drop.cc
src/get-monomer.cc
src/lsq-dialog-values.hh
src/model-view.hh
src/molecule-class-info-refine.cc
src/ncs.hh
src/probe-clash-score.cc
src/probe-clash-score.hh
src/rama-rota-score.hh
src/testing.cc
src/view.cc
Copyright: 2008, the University of Oxford
2008-2010, the University of Oxford
2009, the University of Oxford
2010, the University of Oxford
2010-2012, the University of Oxford
2011, the University of Oxford
2011-2012, the University of Oxford
2012, Medical Research Council
2012, the University of Oxford
2012-2013, Medical Research Council
2013, Medical Research Council
2014, 2016, Medical Research Council
2014, Medical Research Council
2014-2015, Medical Research Council
2015, Medical Research Council
2016, Medical Research Council
License: LGPL-3+
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| |
| control file for libcootapi1.1_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.deb (click to toggle) | |
|---|---|
| Package: | libcootapi1.1 |
| Source: | coot |
| Version: | 1.1.07.705.gb7e2c16a2+dfsg-1 |
| Architecture: | amd64 |
| Maintainer: | Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org> |
| Installed-Size: | 11388 |
| Depends: | libc6 (>=2.34), libclipper2 (>=2.1.20201109), libgcc-s1 (>=4.2), libgsl27 (>=2.7.1), libmmdb2-0 (>=2.0.22), libpng16-16t64 (>=1.6.2), libssm2 (>=1.4.0), libstdc++6 (>=13.1), sfftw2 (>=2.1.5), zlib1g (>=1:1.2.6) |
| Section: | libs |
| Priority: | optional |
| Homepage: | https://github.com/pemsley/coot |
| Description: | shared library for coot Coot is an interactive program for fitting atomic models to crystallographic electron density maps. . This package contains the shared library for Coot's API. |
| contents of libcootapi1.1_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.deb (click to toggle) | |
|---|---|
drwxr-xr-x root/root 0 2024-04-05 12:10 ./ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/lib/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/ -rw-r--r-- root/root 11476776 2024-04-05 12:10 ./usr/lib/x86_64-linux-gnu/libcootapi.so.1.1 drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/share/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/share/doc/libcootapi1.1/ -rw-r--r-- root/root 170 2024-04-05 12:10 ./usr/share/doc/libcootapi1.1/changelog.Debian.gz -rw-r--r-- root/root 57131 2024-04-04 09:46 ./usr/share/doc/libcootapi1.1/changelog.gz -rw-r--r-- root/root 115439 2024-04-05 07:14 ./usr/share/doc/libcootapi1.1/copyright | |
| copyright of libcootapi1.1_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.deb (click to toggle) | |
|---|---|
NOTE: Copyright is the same as coot (coot_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.deb). Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: Coot
Upstream-Contact: https://github.com/pemsley/coot/issues
Source: https://github.com/pemsley/coot
Files-Excluded:
fonts
Files: *
Copyright: 2001-2007, The University of York
2007-2012, The University of Oxford
2012-2016, Medical Research Council
1999-2024, Paul Emsley
License: GPL-3+
Files: analysis/b-factor-histogram.cc
analysis/coot-daca.cc
analysis/daca.cc
analysis/daca.hh
analysis/improper-dihedrals.cc
analysis/mogul-interface.hh
analysis/rna-backbone.cc
analysis/rna-backbone.hh
analysis/test-align.cc
analysis/test-cablam.cc
analysis/test-mogul.cc
analysis/test-rna-backbone.cc
analysis/test-stats.cc
analysis/typed-distances.cc
analysis/typed-distances.hh
api/add-terminal-residue.cc
api/add-terminal-residue.hh
api/api-cell.hh
api/atom-pull.hh
api/blender-mesh.cc
api/blender-mesh.hh
api/bond-colour.hh
api/cell.hh
api/clipper-ccp4-map-file-wrapper.hh
api/colour-functions.cc
api/colour-functions.hh
api/coot-colour.hh
api/coot-molecule-backup.cc
api/coot-molecule-blender.cc
api/coot-molecule-bonds-instanced.cc
api/coot-molecule-bonds.hh
api/coot-molecule-change-chain-id.cc
api/coot-molecule-maps.cc
api/coot-molecule-merge-molecules.cc
api/coot-molecule-moltris.cc
api/coot-molecule-refine.cc
api/coot-molecule-replace-fragment.cc
api/coot-molecule-validation.cc
api/coot-molecule.cc
api/coot-molecule.hh
coords/graphical-bonds-container.hh
coords/graphics-line.hh
coords/loop-path.cc
coords/loop-path.hh
coords/phenix-geo-bonds.cc
coords/phenix-geo.cc
coords/phenix-geo.hh
coords/phi-psi-prob.cc
coords/phi-psi-prob.hh
coords/rama-plot-phi-psi.cc
coords/rama-plot-phi-psi.hh
coords/ramachandran-container.hh
coords/ramachandran-validation.cc
coords/ramachandran-validation.hh
coords/rotamer-container.hh
coords/rotamer-markup.cc
coords/test-phenix-geo.cc
coords/test-transform.cc
coords/torus-description.hh
coot-utils/3d-texture.cc
coot-utils/3d-texture.hh
coot-utils/amp-reso.hh
coot-utils/arc-info.hh
coot-utils/atom-tools.cc
coot-utils/atom-tools.hh
coot-utils/atom-tree.hh
coot-utils/atom-vertex.hh
coot-utils/blob-line.cc
coot-utils/blob-line.hh
coot-utils/bonded-atoms.cc
coot-utils/bonded-atoms.hh
coot-utils/bricks.cc
coot-utils/c-beta-deviations.cc
coot-utils/c-beta-deviations.hh
coot-utils/cablam-markup.cc
coot-utils/cablam-markup.hh
coot-utils/cis-peptide-info.hh
coot-utils/cmtz-interface.cc
coot-utils/cmtz-interface.hh
coot-utils/cod-db-access.cc
coot-utils/contact-info.cc
coot-utils/contact-info.hh
coot-utils/contacts-by-bricks.cc
coot-utils/contacts-by-bricks.hh
coot-utils/coot-least-squares.hh
coot-utils/cylinder-with-rotation-translation.cc
coot-utils/cylinder-with-rotation-translation.hh
coot-utils/cylinder.cc
coot-utils/cylinder.hh
coot-utils/diff-diff-map-peaks.cc
coot-utils/diff-diff-map-peaks.hh
coot-utils/emma.hh
coot-utils/exp-fit.cc
coot-utils/exp-fit.hh
coot-utils/fast-eigens.cc
coot-utils/fast-eigens.hh
coot-utils/fib-sphere.cc
coot-utils/fib-sphere.hh
coot-utils/find-pepflip-using-difference-map.cc
coot-utils/find-pepflip-using-difference-map.hh
coot-utils/find-water-baddies.cc
coot-utils/find-water-baddies.hh
coot-utils/fragment-container.cc
coot-utils/fragment-container.hh
coot-utils/g_triangle.hh
coot-utils/gltf-export.cc
coot-utils/glyco-tree.hh
coot-utils/helix-like.cc
coot-utils/helix-like.hh
coot-utils/jed-flip.cc
coot-utils/jed-flip.hh
coot-utils/lidia-core-functions.cc
coot-utils/lidia-core-functions.hh
coot-utils/make-cablam-like-stats.cc
coot-utils/map-index.hh
coot-utils/merge-C-and-N-terminii.cc
coot-utils/merge-C-and-N-terminii.hh
coot-utils/merge-atom-selections.cc
coot-utils/merge-atom-selections.hh
coot-utils/merge-molecules.cc
coot-utils/merge-molecules.hh
coot-utils/mmrrcc.cc
coot-utils/mtz-column-auto-read.hh
coot-utils/mutate.cc
coot-utils/oct.cc
coot-utils/oct.hh
coot-utils/parse-pisa.cc
coot-utils/parse-pisa.hh
coot-utils/pepflip-using-difference-map.cc
coot-utils/pepflip-using-difference-map.hh
coot-utils/plane-utils.cc
coot-utils/plane-utils.hh
coot-utils/polar-atoms.cc
coot-utils/polar-atoms.hh
coot-utils/positron.cc
coot-utils/positron.hh
coot-utils/prideout-octasphere.hh
coot-utils/reduce.cc
coot-utils/reduce.hh
coot-utils/secondary-structure-headers.cc
coot-utils/secondary-structure-headers.hh
coot-utils/segmap.cc
coot-utils/segmap.hh
coot-utils/sfcalc-genmap.hh
coot-utils/shape-types.hh
coot-utils/shapes.cc
coot-utils/shapes.hh
coot-utils/simple-mesh.cc
coot-utils/simple-mesh.hh
coot-utils/spherical-harmonics.cc
coot-utils/spherical-harmonics.hh
coot-utils/stack-and-pair.cc
coot-utils/stack-and-pair.hh
coot-utils/strand-fragments.cc
coot-utils/strand-fragments.hh
coot-utils/strand-like.hh
coot-utils/test-5-residue-fragments.cc
coot-utils/test-cod-atom-types-from-sm-cif.cc
coot-utils/test-convolute.cc
coot-utils/test-coot-probe.cc
coot-utils/test-diff-diff-map-peaks.cc
coot-utils/test-emma.cc
coot-utils/test-parse-pisa.cc
coot-utils/test-segmap.cc
coot-utils/vertex.hh
density-contour/gaussian-surface.cc
density-contour/gaussian-surface.hh
density-contour/occlusion.cc
density-contour/occlusion.hh
density-contour/test-gaussian-surface.cc
density-contour/test-occlusion.cc
density-contour/transfer-occlusions.hh
geometry/bonded-quad.hh
geometry/chem_mods.hh
geometry/cif-parse-mon-lib.cc
geometry/compare-dictionaries.cc
geometry/dict-mismatches.hh
geometry/dict-utils.cc
geometry/dict-utils.hh
geometry/dictionary-bond-distributions.cc
geometry/dreiding.cc
geometry/gphl-chem-comp-info.hh
geometry/hb-types.hh
geometry/hydrophobic.cc
geometry/hydrophobic.hh
geometry/intercept-3GP.cc
geometry/main-chain.cc
geometry/main-chain.hh
geometry/make-shelx-restraints.cc
geometry/match-results.hh
geometry/mol-utils-2.cc
geometry/mol-utils-2.hh
geometry/mol-utils.cc
geometry/mol-utils.hh
geometry/pdbe-chem-comp-atom-depiction.hh
geometry/pdbx-chem-comp-description-generator.hh
geometry/protein-donor-acceptors.cc
geometry/protein-donor-acceptors.hh
geometry/read-metals-json.cc
geometry/residue-and-atom-specs.cc
geometry/srs-interface.cc
geometry/srs-interface.hh
high-res/high-res.hh
ideal/coot-compare-residues.cc
ideal/crankshaft-test.cc
ideal/crankshaft.cc
ideal/crankshaft.hh
ideal/extra-restraints.hh
ideal/lv.cc
ideal/model-bond-deltas.cc
ideal/model-bond-deltas.hh
ideal/neutron.cc
ideal/new-linked-residue-t.hh
ideal/ng.cc
ideal/parallel-planes.cc
ideal/parallel-planes.hh
ideal/phi-psi.cc
ideal/phi-psi.hh
ideal/process-dfs-in-range.cc
ideal/process-dfs-in-range.hh
ideal/pull-restraint.cc
ideal/rama-types.hh
ideal/refinement-lights.hh
ideal/refinement-results-t.hh
ideal/simulated-annealing.cc
ideal/test-rama-plot.cc
ideal/torsion-bonds.cc
ideal/torsion-bonds.hh
ideal/trans-peptide.cc
ideal/write-png.cc
ideal/write-png.hh
ideal/zo-rama.cc
ideal/zo-rama.hh
lidia-core/atom-types.cc
lidia-core/get-residue.cc
lidia-core/get-residue.hh
lidia-core/neighbour-sorter.hh
lidia-core/svg-molecule.cc
lidia-core/svg-molecule.hh
lidia-core/test-lig-build.cc
lidia-core/third-neighbour-info-t.hh
lidia-core/use-rdkit.hh
ligand/ca-torsion-info.cc
ligand/ca-torsion-info.hh
ligand/dSFMT-params19937.h
ligand/joining-residues.cc
ligand/libres-tracer.cc
ligand/libres-tracer.hh
ligand/ligand-score-card.hh
ligand/map-point-cluster.hh
ligand/multi-peptide.hh
ligand/new-residue-by-3-phi-psi.cc
ligand/new-residue-by-3-phi-psi.hh
ligand/rama-rsr-extend-fragments.cc
ligand/rama-rsr-extend-fragments.hh
ligand/refine-isolated-chain.cc
ligand/refine-isolated-chain.hh
ligand/res-tracer.cc
ligand/scored-molecule.hh
ligand/scored-node.hh
ligand/side-chain-densities.cc
ligand/side-chain-densities.hh
ligand/side-chain.cc
ligand/side-chain.hh
ligand/smith-waterman.hh
ligand/test-tube-finder.cc
ligand/tube-finder.cc
ligand/tube-finder.hh
mini-mol/mol-hierarchy.cc
pli/flev-annotations.cc
pli/protein-ligand-interactions.hh
pli/sdf-interface-for-export.hh
pli/sdf-internal.hh
pli/specs.cc
pli/specs.hh
pyrogen/cairo-molecule.cc
pyrogen/cairo-molecule.hh
src/9.ssao.shader
src/9.ssao_blur.shader
src/9.ssao_geometry.shader
src/Basic.shader
src/HUDMesh.cc
src/HUDMesh.hh
src/HUDTextureMesh.cc
src/HUDTextureMesh.hh
src/Instanced-Markup-Mesh.cc
src/Instanced-Markup-Mesh.hh
src/LigandViewMesh.cc
src/LigandViewMesh.hh
src/LinesMesh.cc
src/LinesMesh.hh
src/Material.hh
src/Mesh-from-glTF.cc
src/Mesh-from-graphical-bonds-instanced.cc
src/Mesh-from-graphical-bonds.cc
src/Mesh.cc
src/Mesh.hh
src/Model.cc
src/Model.hh
src/Particle.cc
src/Particle.hh
src/Shader.cc
src/Shader.hh
src/TemplateMesh.hh
src/Texture.cc
src/Texture.hh
src/TextureMesh.cc
src/TextureMesh.hh
src/animated-ligand.hh
src/array-2d.hh
src/atom-label-info.hh
src/atom-label.shader
src/atom-overlaps.cc
src/atom-pull.hh
src/background-image.shader
src/blur-x.shader
src/blur-y.shader
src/blur.shader
src/boids.cc
src/boids.hh
src/bond-colour-mode.hh
src/boot-python.cc
src/c-interface-bonds.cc
src/c-interface-bonds.hh
src/c-interface-curlew.cc
src/c-interface-curlew.hh
src/c-interface-geometry-distortion.hh
src/c-interface-gui.hh
src/c-interface-image.cc
src/c-interface-ligand-search.hh
src/c-interface-ligands-widgets.hh
src/c-interface-mogul-scripting.cc
src/c-interface-refine.hh
src/c-interface-sequence.cc
src/c-interface-sequence.hh
src/camera-facing-quad-shader-for-testing.shader
src/cc-interface-alignment.cc
src/cc-interface-alignment.hh
src/cc-interface-graphics.cc
src/cc-interface-graphics.hh
src/cc-interface-image.hh
src/cc-interface-map-utils.cc
src/cc-interface-merge.cc
src/cc-interface-molecular-representation.cc
src/cc-interface-molecular-representation.hh
src/cc-interface-molecular-symmetry.cc
src/cc-interface-png.cc
src/cc-interface-scripting.cc
src/cc-interface-user-defined-atom-colours.cc
src/cc-interface-user-defined-atom-colours.hh
src/central-cube.shader
src/cfc-widgets.hh
src/cfc.cc
src/cfc.hh
src/change-dir.cc
src/change-dir.hh
src/clip-hybrid-atom.hh
src/clipper-ccp4-map-file-wrapper.hh
src/clipper-to-glm.hh
src/cmtz-interface-gui.hh
src/colour-functions.hh
src/colour-holder-to-glm.hh
src/coot-application.cc
src/coot-application.hh
src/coot-colour.cc
src/coot-phi-psi.cc
src/coot-phi-psi.hh
src/coot-setup-python.hh
src/coot-version.hh
src/create-menu-item-actions.cc
src/create-menu-item-actions.hh
src/crunch-model.hh
src/curl-utils.hh
src/curlew-gtk4.cc
src/curlew-gtk4.hh
src/curlew.h
src/data-pair-remover.hh
src/density-results-container-t.hh
src/depth-of-field.shader
src/draw-2.hh
src/draw-generic-display-objects.cc
src/draw-map-cap.shader
src/draw.cc
src/draw.hh
src/dynamic-validation.cc
src/dynamic-validation.hh
src/effects.shader
src/event-controller-callbacks.cc
src/event-controller-callbacks.hh
src/extra-distance-restraint-markup.hh
src/extra-distance-restraints.shader
src/extra-restraints-representation.hh
src/eyes.cc
src/eyes.hh
src/fit-loop-gui.cc
src/fit-loop-gui.hh
src/fit-loop.cc
src/fit-loop.hh
src/fixup-interface.h.sh
src/framebuffer.cc
src/framebuffer.hh
src/fresnel-settings.hh
src/ft-character.hh
src/gaussian-surface.cc
src/generic-vertex.hh
src/gensurf.hh
src/gl-rama-plot.cc
src/gl-rama-plot.hh
src/glarea_tick_function.hh
src/globularize.cc
src/graphical-molecule.cc
src/graphical-molecule.hh
src/graphics-info-defines-gtk4.cc
src/graphics-info-draw-models.cc
src/graphics-info-draw.cc
src/graphics-info-init.cc
src/graphics-info-intermediate.cc
src/graphics-info-opengl.cc
src/graphics-info-refine.cc
src/graphics-info-render-scene.cc
src/graphics-info-statics.cc
src/graphics-info-tick-function.cc
src/graphics-ligand-mesh-molecule.cc
src/graphics-ligand-mesh-molecule.hh
src/gtkglarea-rama-plot.hh
src/hud-bars.shader
src/hud-geometry-tooltip-text.shader
src/hud-image-texture.shader
src/hud-labels.shader
src/hud-lines.shader
src/hud-text.shader
src/idles.hh
src/init-from-gtkbuilder.cc
src/init-from-gtkbuilder.hh
src/init_coot_as_python_module.cc
src/init_coot_as_python_module.hh
src/instanced-meshes-for-shadow-map.shader
src/instanced-meshes-for-ssao.shader
src/instanced-meshes-with-shadows.shader
src/instanced-objects.shader
src/key-bindings.cc
src/key-bindings.hh
src/labelled-button-info.hh
src/ligand-check.hh
src/ligand-view.shader
src/lights-info.hh
src/lines-pulse.shader
src/lines.shader
src/make-a-dodec.cc
src/make-a-dodec.hh
src/map.shader
src/map_triangle.hh
src/matrix-utils.cc
src/matrix-utils.hh
src/meshed-generic-display-object.cc
src/meshed-generic-display-object.hh
src/meshed-particle-container.hh
src/meshes-for-shadow-map.shader
src/meshes-for-ssao.shader
src/meshes-with-shadows.shader
src/meshes.shader
src/model-as-mesh.shader
src/model-molecule-meshes.cc
src/model-molecule-meshes.hh
src/model.shader
src/mol-hierarchy.cc
src/mol-tri.hh
src/molecular-mesh-generator-mol-tris.cc
src/molecular-mesh-generator.cc
src/molecular-mesh-generator.hh
src/molecular-triangles-mesh.hh
src/molecule-class-info-alignment.cc
src/molecule-class-info-analysis.cc
src/molecule-class-info-bonds.cc
src/molecule-class-info-dots-internal.cc
src/molecule-class-info-geometry.cc
src/molecule-class-info-maps-2.cc
src/molecule-class-info-mol-tris.cc
src/molecule-class-info-molecular-symmetry.cc
src/molecule-class-info-string.cc
src/moleculestotriangles.shader
src/mtz-column-auto-read.hh
src/new-startup.cc
src/obj_loader.cc
src/obj_loader.h
src/old-event-callbacks.cc
src/old-generic-display-object.cc
src/old-generic-display-object.hh
src/outline-of-active-residue.shader
src/particles.shader
src/pick.hh
src/positron-plot.cc
src/pulse-data.hh
src/pumpkin.cc
src/pumpkin.hh
src/python-classes.cc
src/python-classes.hh
src/python-scripting-gui.hh
src/rail-points.hh
src/rama-balls.shader
src/rama-plot-axes-and-ticks.shader
src/rama-plot-phi-psi-markers.shader
src/rama-plot-phi-psi.cc
src/rama-plot-phi-psi.hh
src/rdkit-smiles.cc
src/read-cif.cc
src/read-molecule.hh
src/residue-markers-for-ssao.shader
src/residue-markers.shader
src/restore-these.hh
src/rotation-centre-cross-hairs-for-ssao.shader
src/rsr-functions.cc
src/rsr-functions.hh
src/screen.shader
src/screendump-tga.cc
src/screendump-tga.hh
src/setup-gui-components.cc
src/setup-gui-components.hh
src/shadow-map-image-texture.shader
src/simple-distance-object.hh
src/simple-refmac.cc
src/single-map-properties-dialog.cc
src/single-map-properties-dialog.hh
src/sound-mac.cc
src/sound.cc
src/sound.hh
src/spherical-density.cc
src/startup-utils.cc
src/startup-utils.hh
src/symmetry-atoms-lines.shader
src/template-python-function.cc
src/testing-2.cc
src/text-rendering-utils.cc
src/text-rendering-utils.hh
src/texture-meshes-for-ssao.shader
src/texture-meshes-shadow-map.shader
src/texture-meshes-with-shadows.shader
src/texture-meshes.shader
src/ud-colour-rule.hh
src/updating-coordinates-molecule-parameters.hh
src/updating-map-params.hh
src/validation.cc
src/validation.hh
src/vnc-vertex-to-generic-vertex.hh
src/widget-from-builder.cc
src/widget-from-builder.hh
src/widget-headers.hh
utils/dodec.cc
utils/dodec.hh
utils/split-indices.cc
utils/split-indices.hh
utils/test-logging.cc
utils/test-utils.cc
utils/threads.cc
utils/win-compat.cc
utils/win-compat.hh
validation-graphs/gtk4-test-sequence-view.cc
validation-graphs/gtk4-test-validation-graph.cc
validation-graphs/residue-validation-information.cc
validation-graphs/residue-validation-information.hh
validation-graphs/validation-graphs.cc
validation-graphs/validation-graphs.hh
validation-graphs/validation-information.cc
validation-graphs/validation-information.hh
Copyright: 2007, Medical Research Council
2011, Medical Research Council
2012, Medical Research Council
2012-2014, Medical Research Council
2013, 2015, Medical Research Council
2013, Medical Research Council
2014, Medical Research Council
2014-2015, Medical Research Council
2015, Medical Research Council
2016, Medical Research Council
2017, Medical Research Council
2018, Medical Research Council
2019, Medical Research Council
2020, Medical Research Council
2021, Medical Research Council
2022, Medical Research Council
2023, Medical Research Council
2024, Medical Research Council
License: LGPL-3+
Files: MoleculesToTriangles/CXXClasses/AtomPropertyRampColorRule.cpp
MoleculesToTriangles/CXXClasses/AtomPropertyRampColorRule.h
MoleculesToTriangles/CXXClasses/BallsPrimitive.cpp
MoleculesToTriangles/CXXClasses/BallsPrimitive.h
MoleculesToTriangles/CXXClasses/BondsPrimitive.cpp
MoleculesToTriangles/CXXClasses/BondsPrimitive.h
MoleculesToTriangles/CXXClasses/BoostWrappers.cpp
MoleculesToTriangles/CXXClasses/BoxSectionPrimitive.cpp
MoleculesToTriangles/CXXClasses/BoxSectionPrimitive.h
MoleculesToTriangles/CXXClasses/CXXMatrix.cpp
MoleculesToTriangles/CXXClasses/CXXMatrix.h
MoleculesToTriangles/CXXClasses/Callbacks.h
MoleculesToTriangles/CXXClasses/Camera.cpp
MoleculesToTriangles/CXXClasses/Camera.h
MoleculesToTriangles/CXXClasses/CameraPort.cpp
MoleculesToTriangles/CXXClasses/CameraPort.h
MoleculesToTriangles/CXXClasses/ColorNamesMap.h
MoleculesToTriangles/CXXClasses/ColorRule.cpp
MoleculesToTriangles/CXXClasses/ColorRule.h
MoleculesToTriangles/CXXClasses/ColorScheme.cpp
MoleculesToTriangles/CXXClasses/ColorScheme.h
MoleculesToTriangles/CXXClasses/CompoundSelection.cpp
MoleculesToTriangles/CXXClasses/CompoundSelection.h
MoleculesToTriangles/CXXClasses/CylinderPoint.cpp
MoleculesToTriangles/CXXClasses/CylinderPoint.h
MoleculesToTriangles/CXXClasses/CylindersPrimitive.cpp
MoleculesToTriangles/CXXClasses/CylindersPrimitive.h
MoleculesToTriangles/CXXClasses/DemoApp.cpp
MoleculesToTriangles/CXXClasses/DirectedPositionedEntity.cpp
MoleculesToTriangles/CXXClasses/DirectedPositionedEntity.h
MoleculesToTriangles/CXXClasses/DiscreteSegment.cpp
MoleculesToTriangles/CXXClasses/DiscreteSegment.h
MoleculesToTriangles/CXXClasses/DishyBase.cpp
MoleculesToTriangles/CXXClasses/DishyBase.h
MoleculesToTriangles/CXXClasses/DisplayPrimitive.cpp
MoleculesToTriangles/CXXClasses/DisplayPrimitive.h
MoleculesToTriangles/CXXClasses/ElectrostaticColorScheme.cpp
MoleculesToTriangles/CXXClasses/ElectrostaticColorScheme.hpp
MoleculesToTriangles/CXXClasses/FlatFanPrimitive.cpp
MoleculesToTriangles/CXXClasses/FlatFanPrimitive.h
MoleculesToTriangles/CXXClasses/GLIndexType.h
MoleculesToTriangles/CXXClasses/Light.cpp
MoleculesToTriangles/CXXClasses/Light.h
MoleculesToTriangles/CXXClasses/LinesPrimitive.cpp
MoleculesToTriangles/CXXClasses/LinesPrimitive.h
MoleculesToTriangles/CXXClasses/MolecularRepresentation.cpp
MoleculesToTriangles/CXXClasses/MolecularRepresentation.h
MoleculesToTriangles/CXXClasses/MolecularRepresentationInstance.cpp
MoleculesToTriangles/CXXClasses/MolecularRepresentationInstance.h
MoleculesToTriangles/CXXClasses/MyMolecule.cpp
MoleculesToTriangles/CXXClasses/MyMolecule.h
MoleculesToTriangles/CXXClasses/NRStuff.cpp
MoleculesToTriangles/CXXClasses/NRStuff.h
MoleculesToTriangles/CXXClasses/Polyhedron.cpp
MoleculesToTriangles/CXXClasses/Polyhedron.h
MoleculesToTriangles/CXXClasses/PositionedEntity.cpp
MoleculesToTriangles/CXXClasses/PositionedEntity.h
MoleculesToTriangles/CXXClasses/Renderer.cpp
MoleculesToTriangles/CXXClasses/Renderer.h
MoleculesToTriangles/CXXClasses/RendererGL.cpp
MoleculesToTriangles/CXXClasses/RendererGL.h
MoleculesToTriangles/CXXClasses/RendererGLSL.cpp
MoleculesToTriangles/CXXClasses/RendererGLSL.hpp
MoleculesToTriangles/CXXClasses/Representation.cpp
MoleculesToTriangles/CXXClasses/Representation.h
MoleculesToTriangles/CXXClasses/RepresentationInstance.cpp
MoleculesToTriangles/CXXClasses/RepresentationInstance.h
MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.cpp
MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h
MoleculesToTriangles/CXXClasses/SceneSetup.cpp
MoleculesToTriangles/CXXClasses/SceneSetup.h
MoleculesToTriangles/CXXClasses/SecondaryColorScheme.cpp
MoleculesToTriangles/CXXClasses/SecondaryColorScheme.h
MoleculesToTriangles/CXXClasses/SolidColorRule.cpp
MoleculesToTriangles/CXXClasses/SolidColorRule.h
MoleculesToTriangles/CXXClasses/SpherePrimitive.cpp
MoleculesToTriangles/CXXClasses/SpherePrimitive.h
MoleculesToTriangles/CXXClasses/SticksPrimitive.cpp
MoleculesToTriangles/CXXClasses/SticksPrimitive.h
MoleculesToTriangles/CXXClasses/SurfacePrimitive.cpp
MoleculesToTriangles/CXXClasses/SurfacePrimitive.h
MoleculesToTriangles/CXXClasses/VertexColorNormalPrimitive.cpp
MoleculesToTriangles/CXXClasses/VertexColorNormalPrimitive.h
MoleculesToTriangles/CXXClasses/lfit.h
MoleculesToTriangles/CXXClasses/oglPolyhedron.cpp
MoleculesToTriangles/CXXClasses/oglPolyhedron.h
MoleculesToTriangles/CXXSurface/CXXAlloc.h
MoleculesToTriangles/CXXSurface/CXXBall.cpp
MoleculesToTriangles/CXXSurface/CXXBall.h
MoleculesToTriangles/CXXSurface/CXXChargeTable.cpp
MoleculesToTriangles/CXXSurface/CXXChargeTable.h
MoleculesToTriangles/CXXSurface/CXXCircle.cpp
MoleculesToTriangles/CXXSurface/CXXCircle.h
MoleculesToTriangles/CXXSurface/CXXCircleNode.cpp
MoleculesToTriangles/CXXSurface/CXXCircleNode.h
MoleculesToTriangles/CXXSurface/CXXCoord.cpp
MoleculesToTriangles/CXXSurface/CXXCoord.h
MoleculesToTriangles/CXXSurface/CXXCreator.cpp
MoleculesToTriangles/CXXSurface/CXXCreator.h
MoleculesToTriangles/CXXSurface/CXXException.cpp
MoleculesToTriangles/CXXSurface/CXXException.h
MoleculesToTriangles/CXXSurface/CXXFFTSolventMap.h
MoleculesToTriangles/CXXSurface/CXXFortranFile.cpp
MoleculesToTriangles/CXXSurface/CXXFortranFile.h
MoleculesToTriangles/CXXSurface/CXXMatrix4x4.h
MoleculesToTriangles/CXXSurface/CXXNewHood.cpp
MoleculesToTriangles/CXXSurface/CXXNewHood.h
MoleculesToTriangles/CXXSurface/CXXPointyBit.h
MoleculesToTriangles/CXXSurface/CXXQADSurface.cpp
MoleculesToTriangles/CXXSurface/CXXQADSurface.h
MoleculesToTriangles/CXXSurface/CXXQADSurfaceStaticData.cpp
MoleculesToTriangles/CXXSurface/CXXSpace.cpp
MoleculesToTriangles/CXXSurface/CXXSpace.h
MoleculesToTriangles/CXXSurface/CXXSphereElement.cpp
MoleculesToTriangles/CXXSurface/CXXSphereElement.h
MoleculesToTriangles/CXXSurface/CXXSphereFlatTriangle.h
MoleculesToTriangles/CXXSurface/CXXSphereNode.cpp
MoleculesToTriangles/CXXSurface/CXXSphereNode.h
MoleculesToTriangles/CXXSurface/CXXSphereTriangle.cpp
MoleculesToTriangles/CXXSurface/CXXSphereTriangle.h
MoleculesToTriangles/CXXSurface/CXXSphereTriangleEdge.cpp
MoleculesToTriangles/CXXSurface/CXXSphereTriangleEdge.h
MoleculesToTriangles/CXXSurface/CXXSurface.cpp
MoleculesToTriangles/CXXSurface/CXXSurface.h
MoleculesToTriangles/CXXSurface/CXXSurfaceMaker.cpp
MoleculesToTriangles/CXXSurface/CXXSurfaceMaker.h
MoleculesToTriangles/CXXSurface/CXXSurfaceVertex.cpp
MoleculesToTriangles/CXXSurface/CXXSurfaceVertex.h
MoleculesToTriangles/CXXSurface/CXXTorusElement.cpp
MoleculesToTriangles/CXXSurface/CXXTorusElement.h
MoleculesToTriangles/CXXSurface/CXXTorusNode.cpp
MoleculesToTriangles/CXXSurface/CXXTorusNode.h
MoleculesToTriangles/CXXSurface/CXXTorusTriangle.h.h
MoleculesToTriangles/CXXSurface/CXXTriangle.cpp
MoleculesToTriangles/CXXSurface/CXXTriangle.h
MoleculesToTriangles/CXXSurface/CXXUtils.cpp
MoleculesToTriangles/CXXSurface/CXXUtils.h
MoleculesToTriangles/CXXSurface/CXXVCN.cpp
MoleculesToTriangles/CXXSurface/CXXVCN.h
MoleculesToTriangles/CXXSurface/TokenIterator.h
Copyright: 2009, Martin Noble, University of Oxford
2010, Martin Noble, University of Oxford
2011, Martin Noble, University of Oxford
2012, Martin Noble, University of Oxford
2016, Martin Noble, University of Oxford
2017, Martin Noble, University of Oxford
License: LGPL-3+
Files: ccp4mg-utils/mgtree.cc
ccp4mg-utils/mgtree.h
ccp4mg-utils/mmut/mman_base.cc
ccp4mg-utils/mmut/mman_base.h
ccp4mg-utils/mmut/mman_manager.cc
ccp4mg-utils/mmut/mman_manager.h
ccp4mg-utils/mmut/mmut_basepairs.cc
ccp4mg-utils/mmut/mmut_basepairs.h
ccp4mg-utils/mmut/mmut_bonds.cc
ccp4mg-utils/mmut/mmut_bonds.h
ccp4mg-utils/mmut/mmut_colour.cc
ccp4mg-utils/mmut/mmut_colour.h
ccp4mg-utils/mmut/mmut_connectivity.cc
ccp4mg-utils/mmut/mmut_connectivity.h
ccp4mg-utils/mmut/mmut_contact.cc
ccp4mg-utils/mmut/mmut_contact.h
ccp4mg-utils/mmut/mmut_hbond.cc
ccp4mg-utils/mmut/mmut_hbond.h
ccp4mg-utils/mmut/mmut_lipids.h
ccp4mg-utils/mmut/mmut_manager.cc
ccp4mg-utils/mmut/mmut_manager.h
ccp4mg-utils/mmut/mmut_morph.h
ccp4mg-utils/mmut/mmut_nma.cc
ccp4mg-utils/mmut/mmut_nma.h
ccp4mg-utils/mmut/mmut_sasarea.cc
ccp4mg-utils/mmut/mmut_sasarea.h
ccp4mg-utils/mmut/mmut_sbase.cc
ccp4mg-utils/mmut/mmut_sbase.h
ccp4mg-utils/mmut/mmut_secstr.cc
ccp4mg-utils/mmut/mmut_secstr.h
ccp4mg-utils/mmut/mmut_spline.cc
ccp4mg-utils/mmut/mmut_util.cc
ccp4mg-utils/mmut/mmut_util.h
ccp4mg-utils/mmut/splineinfo.h
ccp4mg-utils/pygl/atom_util.cc
ccp4mg-utils/pygl/atom_util.h
ccp4mg-utils/pygl/bezier.cc
ccp4mg-utils/pygl/billboard.cc
ccp4mg-utils/pygl/build_tree_primitives.cc
ccp4mg-utils/pygl/catmull.cc
ccp4mg-utils/pygl/catmull.h
ccp4mg-utils/pygl/cbuild.h
ccp4mg-utils/pygl/cdisplayobject.cc
ccp4mg-utils/pygl/cdisplayobject.h
ccp4mg-utils/pygl/cprimitive.cc
ccp4mg-utils/pygl/cprimitive.h
ccp4mg-utils/pygl/font_info.cc
ccp4mg-utils/pygl/font_info.h
ccp4mg-utils/pygl/font_util.cc
ccp4mg-utils/pygl/font_util.h
ccp4mg-utils/pygl/freetype_font.cc
ccp4mg-utils/pygl/freetype_font.h
ccp4mg-utils/pygl/help.cc
ccp4mg-utils/pygl/help.h
ccp4mg-utils/pygl/lincrv.h
ccp4mg-utils/pygl/psutil.cc
ccp4mg-utils/pygl/psutil.h
ccp4mg-utils/pygl/rgbreps.cc
ccp4mg-utils/pygl/rgbreps.h
ccp4mg-utils/pygl/sphere.cc
ccp4mg-utils/pygl/sphere.h
ccp4mg-utils/pygl/sphere_1.h
ccp4mg-utils/pygl/sphere_2.h
ccp4mg-utils/pygl/sphere_3.h
ccp4mg-utils/pygl/splineset.cc
ccp4mg-utils/pygl/subdivide.cc
ccp4mg-utils/pygl/subdivide.h
ccp4mg-utils/pygl/symmetry.cc
ccp4mg-utils/pygl/symmetry.h
ccp4mg-utils/pygl/text.cc
ccp4mg-utils/pygl/texture.cc
ccp4mg-utils/pygl/texture.h
ccp4mg-utils/pygl/win_font.cc
ccp4mg-utils/pygl/win_font.h
ccp4mg-utils/pygl/x11_font.cc
ccp4mg-utils/pygl/x11_font.h
ccp4mg-utils/pygl/zsortps.cc
ccp4mg-utils/util/CParamsManager.cc
ccp4mg-utils/util/CParamsManager.h
ccp4mg-utils/util/cartesian.cc
ccp4mg-utils/util/cartesian.h
ccp4mg-utils/util/connect.cc
ccp4mg-utils/util/connect.h
ccp4mg-utils/util/geomutil.cc
ccp4mg-utils/util/geomutil.h
ccp4mg-utils/util/matrix.cc
ccp4mg-utils/util/matrix.h
ccp4mg-utils/util/mginterrupt.cc
ccp4mg-utils/util/mginterrupt.h
ccp4mg-utils/util/mgtree.cc
ccp4mg-utils/util/mgtree.h
ccp4mg-utils/util/mgutil.cc
ccp4mg-utils/util/mgutil.h
ccp4mg-utils/util/plane.cc
ccp4mg-utils/util/plane.h
ccp4mg-utils/util/quat.cc
ccp4mg-utils/util/quat.h
ccp4mg-utils/util/redirect.cc
ccp4mg-utils/util/volume.cc
ccp4mg-utils/util/volume.h
Copyright: 2001-2008, University of York, CCLRC
License: LGPL-3
Files: api/filo-tests.cc
api/filo-tests.hh
coot-utils/coot-h-bonds.hh
coot-utils/coot-hole.hh
coot-utils/coot-lsq-types.h
coot-utils/elastic.cc
coot-utils/elastic.hh
coot-utils/helix-analysis.cc
coot-utils/helix-analysis.hh
coot-utils/read-sm-cif.hh
coot-utils/test-elastic.cc
coot-utils/test-h-bonds.cc
coot-utils/test-hole.cc
coot-utils/test-morph.cc
coot-utils/xmap-stats.hh
geometry/lbg-graph.cc
geometry/lbg-graph.cc-m
geometry/lbg-graph.hh
geometry/test-read-components.cc
ligand/chi-angles-autogen.cc
ligand/primitive-chi-angles.cc
ligand/primitive-chi-angles.hh
ligand/read-dunbrack.awk
ligand/richardson-rotamer.cc
ligand/richardson-rotamers.cc
skeleton/BuildCas.h
skeleton/dm-utils.cc
skeleton/graphical_skel.cc
skeleton/graphical_skel.h
src/add-c-extern.sh
src/blank.cc
src/c-inner-main.h
src/c-interface-ligands-swig.hh
src/c-interface-wii.cc
src/canvas-fixes.hh
src/cc-interface-mogul.hh
src/cmtz-interface.hh
src/command-arg.hh
src/command-line.hh
src/coot-align.cc
src/coot-align.hh
src/coot-colour.hh
src/coot-database.hh
src/coot-fileselections.h
src/coot-glue.hh
src/coot-hydrogens.cc
src/coot-hydrogens.hh
src/coot-nomenclature.hh
src/coot-preferences.h
src/coot-references.h
src/coot-render.hh
src/coot.i
src/fix-nomenclature.cc
src/flev.hh
src/get-residue.cc
src/get-residue.hh
src/gl-bits.hh
src/gl-matrix.cc
src/graphics-info-network.cc
src/graphics-info-scripting.cc
src/gtk-manual.hh
src/gtk-widget-conversion-utils.cc
src/gtk-widget-conversion-utils.h
src/guile-fixups.h
src/history_list.hh
src/interface.c
src/interface.h
src/lbg-callbacks-outer.cc
src/lbg-interface.hh
src/mmcif-sfs-to-mtz-main.cc
src/molecule-class-info-dots.cc
src/molecule-class-info.h
src/named-rotamer-score.hh
src/pisa-interface.hh
src/post-glade
src/post-gtk2-glade.sh
src/protein_db-interface.cc
src/protein_db-interface.hh
src/restraints-editor-c.h
src/rotate-translate-modes.hh
src/sdf-interface.hh
src/sdf-internal.hh
src/select-atom-info.hh
src/seq-view-interface.c
src/seq-view-interface.h
src/support-gtk2-extras.c
src/support.c
src/test-chol.cc
src/test-lbg-graph.cc
src/testing-scm.cc
src/testing-scm.hh
src/triangle-extras.h
src/user-mods.cc
src/user-mods.hh
src/xmap-utils.cc
src/xmap-utils.h
Copyright: 2007, University of York
2008, University of York
2009, University of York
2010, University of York
2011, University of York
2012, University of York
2023, University of York
License: LGPL-3+
Files: build/CalphaBuild.cc
build/CalphaBuild.hh
build/testcabuild.cc
coords/Bond_lines_ext.cc
coords/Cartesian.cc
coords/Cartesian.h
coords/Makefile.am
coords/coot-close.cc
coords/coot-close.hh
coords/cos-sin.cc
coords/cos-sin.h
coords/mmdb-crystal.cc
coords/mmdb-crystal.h
coords/mmdb-extras.cc
coords/mmdb-extras.h
coords/mmdb.hh
coords/utils.cc
coords/utils.h
density-contour/density-contour-triangles.cc
density-contour/density-contour-triangles.hh
geometry/Makefile.am
geometry/Makefile.simple
ideal/Makefile.am
ideal/lograma.cpp
ideal/lograma.h
ideal/logramatest.cpp
ideal/molmantest.cc
ideal/pepflip.hh
ideal/regularize-minimol.cc
ideal/regularize-minimol.hh
ideal/test-indexing.cc
ideal/test-indexing.hh
ideal/with-geometry.cc
pyrogen/pyrogen-swig.i
skeleton/dm-utils.h
src/align.cc
src/c-inner-main.c
src/c-interface-gtk2.cc
src/c-interface-mmdb.hh
src/c-interface-python.cc
src/c-interface-python.hh
src/coot_pythonmodule.cc
src/density-score-by-residue-src.cc
src/geometry-graphs.cc
src/geometry-graphs.hh
src/gl-matrix.h
src/graphics-info-lsq.cc
src/graphics-info-pick.cc
src/graphics-info-preferences.cc
src/graphics-info-superpose.cc
src/molecule-class-info-kdc.cc
src/molecule-class-info-ribbons.cc
src/molecule-class-info-surface.cc
src/molecule-class-info-widget-work.cc
src/pick.cc
src/positioned-widgets.h
src/rama_mousey.cc
src/read-phs.h
src/sequence-view.cc
src/sequence-view.hh
utils/Makefile.am
utils/atomic-numbers.cc
utils/coot-fasta.hh
utils/coot-utils.hh
Copyright: 2001-2003, 2006, The University of York
2001-2006, The University of York
2001-2007, The University of York
2002, The University of York
2002-2003, The University of York
2002-2004, The University of York
2002-2005, The University of York
2002-2006, The University of York
2002-2007, The University of York
2004, 2006, The University of York
2004, The University of York
2004-2005, The University of York
2004-2006, The University of York
2005, The University of York
2005-2006, The University of York
2006, The University of York
2007, The University of York
2008, The University of York
2011, The University of York
2014, The University of York
2020, The University of York
License: LGPL-3+
Files: analysis/fraction_stats.py
analysis/mogul.cc
analysis/peptide-projection.cc
analysis/stats.cc
analysis/stats.hh
api/Makefile.am
api/coot-colour.cc
canyon/canyon-points.scm
canyon/canyon.cc
canyon/canyon.hh
canyon/quaternion.cc
coot-utils/atom-overlaps.cc
coot-utils/atom-overlaps.hh
coot-utils/coot-density-stats.hh
coot-utils/dictionary-atom-types.cc
coot-utils/slurp-map.cc
coot-utils/slurp-map.hh
coot-utils/test-chem-feat.cc
coot-utils/test-cod-atom-types.cc
coot-utils/test-spherical.cc
lidia-core/bond-record-container-t.cc
lidia-core/bond-record-container-t.hh
lidia-core/bond-table-record-t.cc
lidia-core/bond-table-record-t.hh
lidia-core/cod-atom-type-t.cc
lidia-core/cod-atom-type-t.hh
lidia-core/cod-atom-types.cc
lidia-core/cod-atom-types.hh
lidia-core/cod-types.cc
lidia-core/cod-types.hh
lidia-core/primes.hh
lidia-core/test-fei-vs-mine.py
ligand/ligand-percentiles.cc
ligand/ligands-db.cc
ligand/ligands-db.hh
ligand/make-ligands-db.cc
ligand/smith-waterman.cc
ligand/test-trace.cc
ligand/trace-2.cc
ligand/trace.cc
ligand/trace.hh
man/coot-compare-dictionaries.man
man/coot-mini-rsr.man
man/coot.man
man/findligand.man
man/findwaters.man
pli/Makefile.am
pli/pi-stacking.hh
pyrogen/mmff-restraints.cc
pyrogen/mmff-restraints.hh
python/coot_chemical_feature_clusters.py
python/ligand_validation_sliders.py
scheme/3d-generator-import.scm
scheme/contact-score-isolated-ligand.scm
scheme/dictionary-generators.scm
scheme/enhanced-ligand.scm
scheme/gui-add-linked-cho.scm
scheme/gui-hole.scm
scheme/gui-ligand-sliders.scm
scheme/gui-prosmart.scm
scheme/ligand-check.scm
scheme/run-mogul.scm
Copyright: 2010, Medical Research Council
2012-2014, Medical Research Council
2013, Medical Research Council
2014, Medical Research Council
2014-2015, Medical Research Council
2015, Medical Research Council
2016, Medical Research Council
2017, Medical Research Council
2018, Medical Research Council
2019, Medical Research Council
2020, Medical Research Council
2021, Medical Research Council
License: GPL-3+
Files: Makefile.am
analysis/Makefile.am
autogen.sh
build/Makefile.am
compat/coot-sysdep.h
coot-utils/atom-selection-container.cc
coot-utils/atom-selection-container.hh
coot-utils/coot-coord-utils-glyco.cc
coot-utils/coot-map-heavy.hh
coot-utils/coot-shelx.hh
coot-utils/coot-trim.hh
coot-utils/peak-search.hh
db-main/db-main.cc
db-main/db-main.hh
db-main/db-strands.cc
db-main/db-strands.hh
db-main/testdbmain.cc
density-contour/Makefile.am
high-res/Makefile.am
high-res/coot-atom-graph.hh
high-res/coot-node-info.hh
high-res/globularize.cc
high-res/trace-high-res.cc
ligand/chi-angles.cc
ligand/chi-angles.hh
ligand/dunbrack.cc
ligand/dunbrack.hh
ligand/fast-ss-search.hh
ligand/find-waters.cc
ligand/helix-placement.cc
ligand/helix-placement.hh
ligand/monomer-utils.cc
ligand/monomer-utils.hh
ligand/test-fffear-in-coot.cc
ligand/test-helix-placement.cc
ligand/test-random.cc
ligand/wligand.hh
macros/Makefile.am
macros/clipper.m4
macros/coot-database.m4
macros/coot-windows.m4
macros/glut.m4
macros/guile-gtk.m4
macros/with-guile.m4
mini-mol/Makefile.am
mini-mol/atom-quads.cc
mini-mol/mini-mol-utils.cc
mini-mol/mini-mol-utils.hh
mini-mol/mini-mol.hh
mini-mol/testminimol.cc
scheme/coot-lsq.scm
scheme/fitting.scm
scheme/group-settings.scm
scheme/refmac.scm
scheme/tips-gui.scm
setup/coot.csh.in
setup/coot.sh.in
shell-utils/shell-copyright-template.sh
skeleton/BuildCas.cc
skeleton/Makefile.am
Copyright: 2001-2003, 2006, The University of York
2001-2003, The University of York
2001-2004, 2006, The University of York
2001-2007, The University of York
2002, The University of York
2002-2003, 2006, The University of York
2002-2004, The University of York
2002-2005, The University of York
2002-2006, The University of York
2003, The University of York
2003-2004, 2006-2007, The University of York
2003-2004, The University of York
2004, 2006, The University of York
2004, The University of York
2004-2005, The University of York
2004-2006, The University of York
2004-2007, The University of York
2005, The University of York
2005-2006, The University of York
2005-2007, The University of York
2006, The University of York
2007, The University of York
2008, The University of York
2009, The University of York
2011, The University of York
License: GPL-3+
Files: rcrane/__init__.py
rcrane/about.py
rcrane/bondLength.py
rcrane/buildInitSugar.py
rcrane/buildPhosOxy.py
rcrane/calcCoords.py
rcrane/chain.py
rcrane/citationPopup.py
rcrane/coot_gui_adapter.py
rcrane/coot_utils_adapter.py
rcrane/extendChain.py
rcrane/guiUtils.py
rcrane/installRCrane.py
rcrane/launch.py
rcrane/linearInterp.py
rcrane/menu.py
rcrane/nextPhos.py
rcrane/nucleotide.py
rcrane/phenixRestraints.py
rcrane/preLaunchCheck.py
rcrane/pseudoMolecule.py
rcrane/pseudoPredictor.py
rcrane/puckerList.py
rcrane/reportInputErrors.py
rcrane/reviewSuitesGui.py
rcrane/rotData.py
rcrane/rotamerSeq.py
rcrane/rotamerize.py
rcrane/safelog.py
rcrane/selectMapDialog.py
rcrane/settings.py
rcrane/smoothProb.py
rcrane/stats.py
rcrane/strucCalc.py
rcrane/suite.py
rcrane/thetaEtaPredictor.py
rcrane/traceGui.py
Copyright: 2010, Kevin Keating
2010-2011, 2102, Kevin Keating
2010-2011, Kevin Keating
2010-2012, Kevin Keating
2011, Kevin Keating
2011-2012, Kevin Keating
2012, Kevin Keating
License: ECL-2.0
Files: geometry/cif-parse-link.cc
geometry/cif-parse.cc
geometry/dictionary-residue.cc
geometry/glyco-tools.cc
geometry/link.cc
geometry/protein-geometry.cc
geometry/protein-geometry.hh
ideal/chi-squareds.cc
ideal/chirals.cc
ideal/distortion.cc
ideal/flanking.cc
ideal/gradients.cc
ideal/link-restraints.cc
ideal/make-restraints.cc
ideal/mini-rsr.cc
ideal/mods.cc
ideal/simple-restraint.cc
ideal/simple-restraint.hh
src/Makefile.am
src/c-interface-gui.cc
src/c-interface-ligands-gui.cc
src/c-interface-ligands.cc
src/c-interface-maps.cc
src/c-interface-ncs.cc
src/c-interface-preferences.cc
src/c-interface-waters-gui.cc
src/c-interface-waters.cc
src/generic-objects.cc
src/glade-callbacks-main-window.cc
src/glade-callbacks-preferences.cc
src/glade-callbacks-shader-settings.cc
src/glade-callbacks.cc
src/graphics-info-graphs.cc
src/main.cc
src/molecule-class-info-ncs.cc
src/molecule-class-info-other.cc
Copyright: 2001-2007, The University of York
2002-2003, The University of York
2002-2005, The University of York
2002-2006, The University of York
2002-2007, The University of York
2003-2004, 2007, The University of York
2003-2006, The University of York
2004-2005, The University of York
2004-2007, The University of York
2005-2006, The University of York
2007, 2009, 2011-2012, The University of Oxford
2007, 2012, The University of Oxford
2007, The University of Oxford
2007, The University of York
2007-2008, The University of Oxford
2007-2009, The University of Oxford
2007-2012, The University of Oxford
2008, 2010, The University of Oxford
2008, The University of Oxford
2008-2009, 2011-2012, The University of Oxford
2008-2009, The University of Oxford
2008-2010, The University of Oxford
2008-2012, The University of Oxford
2009, The University of Oxford
2012-2015, Medical Research Council
2013, 2015-2016, Medical Research Council
2013, Medical Research Council
2013-2014, Medical Research Council
2013-2015, 2018, 2020-2021, Medical Research Council
2013-2015, Medical Research Council
2013-2016, Medical Research Council
2014, Medical Research Council
2014-2015, Medical Research Council
2014-2016, Medical Research Council
2015-2016, Medical Research Council
2016, Medical Research Council
License: LGPL-3+
Files: coot-utils/voidp-buffer.hh
layla/generators.cpp
layla/generators.hpp
layla/layla_embedded.cpp
layla/layla_embedded.hpp
layla/ligand_editor_canvas.cpp
layla/ligand_editor_canvas.hpp
layla/ligand_editor_canvas/core.cpp
layla/ligand_editor_canvas/core.hpp
layla/ligand_editor_canvas/model.cpp
layla/ligand_editor_canvas/model.hpp
layla/ligand_editor_canvas/render.cpp
layla/ligand_editor_canvas/render.hpp
layla/ligand_editor_canvas/tools.cpp
layla/ligand_editor_canvas/tools.hpp
layla/main.cpp
layla/notifier.cpp
layla/notifier.hpp
layla/python_utils.cpp
layla/python_utils.hpp
layla/signals.cpp
layla/state.cpp
layla/state.hpp
layla/ui.cpp
layla/ui.hpp
layla/utils.cpp
layla/utils.hpp
lhasa/embind.cpp
lhasa/embind.hpp
lhasa/glog_replacement.cpp
lhasa/glog_replacement.hpp
lhasa/lhasa.cpp
lhasa/lhasa.hpp
Copyright: 2023, Global Phasing Ltd.
License: GPL-3+
Files: cootaneer/buccaneer-lib.cpp
cootaneer/buccaneer-lib.h
cootaneer/buccaneer-prot.cpp
cootaneer/buccaneer-prot.h
cootaneer/buccaneer-sequence.cpp
cootaneer/buccaneer-sequence.h
cootaneer/cootaneer-demo.cpp
cootaneer/cootaneer-sequence.cpp
cootaneer/cootaneer-sequence.h
cootilus/cootilus-build.cpp
cootilus/cootilus-build.h
cootilus/cootilus-demo.cpp
cootilus/nautilus-join.cpp
cootilus/nautilus-join.h
cootilus/nautilus-ss-find.cpp
cootilus/nautilus-ss-find.h
cootilus/nautilus-target.cpp
cootilus/nautilus-target.h
cootilus/nautilus-tools.cpp
cootilus/nautilus-tools.h
cootilus/nucleicacid_db.cpp
cootilus/nucleicacid_db.h
protein_db/protein_db.cpp
protein_db/protein_db.h
protein_db/protein_db_utils.cpp
protein_db/protein_db_utils.h
protein_db/rna_db.cpp
protein_db/rna_db.h
Copyright: 2002-2006, Kevin Cowtan
2003-2006, Kevin Cowtan
2006, Kevin Cowtan
2008-2009, Kevin Cowtan
2011, Kevin Cowtan
2012, Kevin Cowtan
License: LGPL-3+
Files: coot-utils/coot-coord-utils-nucleotides.cc
coot-utils/coot-h-bonds.cc
coot-utils/lsq-improve.cc
coot-utils/lsq-improve.hh
lidia-core/lbg-molfile.cc
lidia-core/lbg-molfile.hh
lidia-core/lbg-shared.cc
lidia-core/lbg-shared.hh
lidia-core/lig-build.cc
lidia-core/rdkit-interface.hh
ligand/dipole.cc
ligand/dipole.hh
ligand/rotamer-tables.cc
macros/libglade.m4
mini-mol/atom-quads.hh
pli/flev-annotations.hh
pli/protein-ligand-interactions.cc
pli/sdf-interface.hh
protein_db/Makefile.am
rama-data/Makefile.am
scheme/clear-backup.scm
src/c-interface-view.cc
Copyright: 2007, The University of Oxford
2008, The University of Oxford
2008-2009, The University of Oxford
2009, The University of Oxford
2010, The University of Oxford
2010-2011, The University of Oxford
2010-2012, The University of Oxford
2011, The University of Oxford
2012, The University of Oxford
License: GPL-3+
Files: geometry/energy-lib.cc
pyrogen/atom_types.cc
src/additional-representation.hh
src/atom-attribute.hh
src/atom-name-bits.hh
src/atom-selection.hh
src/c-interface-generic-objects.h
src/c-interface-mogul.cc
src/c-interface-preferences.h
src/coot-setup-python.cc
src/drag-and-drop.cc
src/get-monomer.cc
src/lsq-dialog-values.hh
src/model-view.hh
src/molecule-class-info-refine.cc
src/ncs.hh
src/probe-clash-score.cc
src/probe-clash-score.hh
src/rama-rota-score.hh
src/testing.cc
src/view.cc
Copyright: 2008, the University of Oxford
2008-2010, the University of Oxford
2009, the University of Oxford
2010, the University of Oxford
2010-2012, the University of Oxford
2011, the University of Oxford
2011-2012, the University of Oxford
2012, Medical Research Council
2012, the University of Oxford
2012-2013, Medical Research Council
2013, Medical Research Council
2014, 2016, Medical Research Council
2014, Medical Research Council
2014-2015, Medical Research Council
2015, Medical Research Council
2016, Medical Research Council
License: LGPL-3+
Files: analysis/b-factor-histogram.hh
analysis/bfactan.cc
analysis/bfkurt.cc
analysis/bfkurt.hh
analysis/cablam.hh
utils/align-utils.cc
utils/align-utils.hh
utils/colour-holder.cc
utils/colour-holder.hh
utils/hsv-rgb.cc
utils/insertion-sort.cc
utils/insertion-sort.hh
utils/logging.cc
utils/logging.hh
utils/pir-alignment.cc
utils/pir-alignment.hh
utils/radix.cc
utils/radix.hh
utils/setup-syminfo.cc
utils/setup-syminfo.hh
Copyright: 2009, University of Oxford
License: LGPL-3+
Files: coot-utils/bonded-pairs.cc
coot-utils/bonded-pairs.hh
coot-utils/coot-least-squares.cc
coot-utils/coot-tree-extras.cc
coot-utils/glyco-torsions.cc
coot-utils/glyco-torsions.hh
coot-utils/hole.cc
coot-utils/read-sm-cif.cc
coot-utils/test-glyco-torsions.cc
coot-utils/water-coordination.cc
lidia-core/lig-build.hh
lidia-core/rdkit-interface.cc
pixmaps/Makefile.am
pli/sdf-interface.cc
pyrogen/Makefile.am
pyrogen/Makefile.simple
scheme/get-recent-pdbe.scm
sounds/Makefile.am
textures/Makefile.am
Copyright: 2009, The University of Oxford
2010, The University of Oxford
2010-2012, The University of Oxford
2011, The University of Oxford
2011-2012, The University of Oxford
2012, The University of Oxford
2012-2016, Medical Research Council
2013, Medical Research Council
2014, Medical Research Council
2015, Medical Research Council
2015-2016, Medical Research Council
2016, Medical Research Council
License: GPL-3+
Files: api/ncs.hh
doc/coot-shelx.tex
doc/tutorial-2.tex
lidia-core/chemical-feature-clusters.cc
lidia-core/chemical-feature-clusters.hh
ligand/multi-peptide.cc
pli/pi-stacking.cc
pyrogen/atom_types.py
pyrogen/py-restraints.cc
pyrogen/pyrogen.py
pyrogen/restraints-boost.cc
pyrogen/restraints-private.hh
pyrogen/restraints.cc
pyrogen/restraints.hh
python/pdbe_validation_data.py
scheme/get-ebi.scm
scheme/ncs.scm
scheme/template-key-bindings.scm
scheme/user-define-restraints.scm
Copyright: 2008, the University of Oxford
2010, the University of Oxford
2011, the University of Oxford
2012, the University of Oxford
2013, Medical Research Council
2013, the University of Oxford
2013-2015, Medical Research Council
2014, Medical Research Council
2014-2015, Medical Research Council
2015, Medical Research Council
2016, Medical Research Council
License: GPL-3+
Files: geometry/chem_mods.cc
src/c-interface-analysis.cc
src/c-interface-database.hh
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| |
| control file for libcootapi1.1-dbgsym_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.deb (click to toggle) | |
|---|---|
| Package: | libcootapi1.1-dbgsym |
| Source: | coot |
| Version: | 1.1.07.705.gb7e2c16a2+dfsg-1 |
| Auto-Built-Package: | debug-symbols |
| Architecture: | amd64 |
| Maintainer: | Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org> |
| Installed-Size: | 83261 |
| Depends: | libcootapi1.1 (=1.1.07.705.gb7e2c16a2+dfsg-1) |
| Section: | debug |
| Priority: | optional |
| Description: | debug symbols for libcootapi1.1 |
| Build-Ids: | 7fadb6bfa3ba43d3aa3209e95e60603cb3d8282c |
| lintian 2.104.0 check for libcootapi1.1-dbgsym_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.deb (click to toggle) | |
|---|---|
| contents of libcootapi1.1-dbgsym_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.deb (click to toggle) | |
|---|---|
drwxr-xr-x root/root 0 2024-04-05 12:10 ./ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/lib/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/lib/debug/.build-id/7f/ -rw-r--r-- root/root 85248552 2024-04-05 12:10 ./usr/lib/debug/.build-id/7f/adb6bfa3ba43d3aa3209e95e60603cb3d8282c.debug drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/share/ drwxr-xr-x root/root 0 2024-04-05 12:10 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-04-05 12:10 ./usr/share/doc/libcootapi1.1-dbgsym -> libcootapi1.1 | |
| copyright of libcootapi1.1-dbgsym_1.1.07.705.gb7e2c16a2+dfsg-1_amd64.deb (click to toggle) | |
|---|---|
WARNING: No copyright found, please check package manually. | |
Timestamp: 05.04.2024 / 14:12:54 (UTC)