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changeo_0.3.12-1_amd64.changes (click to toggle)
Format:1.8
Date:Sun, 17 Jun 2018 21:14:11 +0200
Source:changeo
Binary:changeo
Architecture:source all
Version:0.3.12-1
Distribution:unstable
Urgency:medium
Maintainer:Steffen Moeller <moeller@debian.org>
Changed-By:Steffen Moeller <moeller@debian.org>
Description:
changeo    - Repertoire clonal assignment toolkit (Python 3)
Closes:901742
Changes:
changeo (0.3.12-1) unstable; urgency=medium

  * Initial release (Closes: #901742).
Files:
c5bc9085ab98fb22234d15a83043f77f 1898 science optional changeo_0.3.12-1.dsc
6ee27fc8c158a2907715836e3d89f70e 107816 science optional changeo_0.3.12.orig.tar.gz
e23fe50839282f80072a7051a9f52c75 6552 science optional changeo_0.3.12-1.debian.tar.xz
def00cde50c4fed918f13d1568487d58 71136 science optional changeo_0.3.12-1_all.deb
711a37ee92adb14ea950a0956926b667 6318 science optional changeo_0.3.12-1_amd64.buildinfo
changeo_0.3.12-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:changeo
Binary:changeo
Architecture:all
Version:0.3.12-1
Maintainer:Steffen Moeller <moeller@debian.org>
Homepage:http://changeo.readthedocs.io
Standards-Version:4.1.4
Vcs-Browser:https://salsa.debian.org/med-team/changeo
Vcs-Git:https://salsa.debian.org/med-team/changeo.git
Build-Depends:debhelper (>=11), dh-python, python3-all, python3-setuptools (>=2.0)
Package-List:changeo deb science optional arch=all
Files:
6ee27fc8c158a2907715836e3d89f70e 107816 changeo_0.3.12.orig.tar.gz
e23fe50839282f80072a7051a9f52c75 6552 changeo_0.3.12-1.debian.tar.xz
lintian check for changeo_0.3.12-1.dsc (click to toggle)
W: changeo source: ancient-python-version-field x-python3-version 3.4
README.source for changeo_0.3.12-1.dsc (click to toggle)
No README.source in this package
control file for changeo_0.3.12-1_all.deb (click to toggle)
Package:changeo
Version:0.3.12-1
Architecture:all
Maintainer:Steffen Moeller <moeller@debian.org>
Installed-Size:485
Depends:python3-biopython, python3-numpy, python3-pandas, python3-pkg-resources, python3-scipy, python3:any (>=3.4~)
Section:science
Priority:optional
Homepage:http://changeo.readthedocs.io
Description:
Repertoire clonal assignment toolkit (Python 3)
 Change-O is a collection of tools for processing the output of V(D)J
 alignment tools, assigning clonal clusters to immunoglobulin (Ig)
 sequences, and reconstructing germline sequences.
 .
 Dramatic improvements in high-throughput sequencing technologies now
 enable large-scale characterization of Ig repertoires, defined as the
 collection of trans-membrane antigen-receptor proteins located on the
 surface of B cells and T cells. Change-O is a suite of utilities to
 facilitate advanced analysis of Ig and TCR sequences following germline
 segment assignment. Change-O handles output from IMGT/HighV-QUEST
 and IgBLAST, and provides a wide variety of clustering methods for
 assigning clonal groups to Ig sequences. Record sorting, grouping,
 and various database manipulation operations are also included.
 .
 This package installs the library for Python 3.
lintian check for changeo_0.3.12-1_all.deb (click to toggle)
N: Ignoreing .py endings to preserve compatibility with
N: scripts exchanged in the community.
O: changeo: script-with-language-extension usr/bin/AlignRecords.py
N: Ignoreing .py endings to preserve compatibility with
N: scripts exchanged in the community.
O: changeo: script-with-language-extension usr/bin/CreateGermlines.py
N: Ignoreing .py endings to preserve compatibility with
N: scripts exchanged in the community.
O: changeo: script-with-language-extension usr/bin/DefineClones.py
N: Ignoreing .py endings to preserve compatibility with
N: scripts exchanged in the community.
O: changeo: script-with-language-extension usr/bin/MakeDb.py
N: Ignoreing .py endings to preserve compatibility with
N: scripts exchanged in the community.
O: changeo: script-with-language-extension usr/bin/ParseDb.py
W: changeo: binary-without-manpage usr/bin/AlignRecords.py
W: changeo: binary-without-manpage usr/bin/CreateGermlines.py
W: changeo: binary-without-manpage usr/bin/DefineClones.py
W: changeo: binary-without-manpage usr/bin/MakeDb.py
W: changeo: binary-without-manpage usr/bin/ParseDb.py
contents of changeo_0.3.12-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2018-06-17 19:14 ./
drwxr-xr-x root/root         0 2018-06-17 19:14 ./usr/
drwxr-xr-x root/root         0 2018-06-17 19:14 ./usr/bin/
-rwxr-xr-x root/root     16831 2018-06-17 19:14 ./usr/bin/AlignRecords.py
-rwxr-xr-x root/root     26580 2018-06-17 19:14 ./usr/bin/CreateGermlines.py
-rwxr-xr-x root/root     46983 2018-06-17 19:14 ./usr/bin/DefineClones.py
-rwxr-xr-x root/root     26262 2018-06-17 19:14 ./usr/bin/MakeDb.py
-rwxr-xr-x root/root     43309 2018-06-17 19:14 ./usr/bin/ParseDb.py
drwxr-xr-x root/root         0 2018-06-17 19:14 ./usr/lib/
drwxr-xr-x root/root         0 2018-06-17 19:14 ./usr/lib/python3/
drwxr-xr-x root/root         0 2018-06-17 19:14 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2018-06-17 19:14 ./usr/lib/python3/dist-packages/changeo/
-rw-r--r-- root/root     11709 2018-06-17 19:14 ./usr/lib/python3/dist-packages/changeo/Commandline.py
-rw-r--r-- root/root       176 2018-06-17 19:14 ./usr/lib/python3/dist-packages/changeo/Defaults.py
-rw-r--r-- root/root      8187 2018-06-17 19:14 ./usr/lib/python3/dist-packages/changeo/Distance.py
-rw-r--r-- root/root      7490 2018-06-17 19:14 ./usr/lib/python3/dist-packages/changeo/IO.py
-rw-r--r-- root/root     10061 2018-06-17 19:14 ./usr/lib/python3/dist-packages/changeo/Multiprocessing.py
-rw-r--r-- root/root     60367 2018-06-17 19:14 ./usr/lib/python3/dist-packages/changeo/Parsers.py
-rw-r--r-- root/root     16515 2018-06-17 19:14 ./usr/lib/python3/dist-packages/changeo/Receptor.py
-rw-r--r-- root/root       335 2018-06-17 19:14 ./usr/lib/python3/dist-packages/changeo/Version.py
-rw-r--r-- root/root       258 2018-06-17 19:14 ./usr/lib/python3/dist-packages/changeo/__init__.py
drwxr-xr-x root/root         0 2018-06-17 19:14 ./usr/lib/python3/dist-packages/changeo/data/
-rw-r--r-- root/root       163 2018-06-17 19:14 ./usr/lib/python3/dist-packages/changeo/data/hh_s1f_dist.tsv
-rw-r--r-- root/root     71275 2018-06-17 19:14 ./usr/lib/python3/dist-packages/changeo/data/hh_s5f_dist.tsv
-rw-r--r-- root/root       151 2018-06-17 19:14 ./usr/lib/python3/dist-packages/changeo/data/hs1f_compat_dist.tsv
-rw-r--r-- root/root       151 2018-06-17 19:14 ./usr/lib/python3/dist-packages/changeo/data/m1n_compat_dist.tsv
-rw-r--r-- root/root       163 2018-06-17 19:14 ./usr/lib/python3/dist-packages/changeo/data/mk_rs1nf_dist.tsv
-rw-r--r-- root/root     71331 2018-06-17 19:14 ./usr/lib/python3/dist-packages/changeo/data/mk_rs5nf_dist.tsv
drwxr-xr-x root/root         0 2018-06-17 19:14 ./usr/lib/python3/dist-packages/changeo-0.3.12.egg-info/
-rw-r--r-- root/root     24602 2018-06-17 19:14 ./usr/lib/python3/dist-packages/changeo-0.3.12.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2018-06-17 19:14 ./usr/lib/python3/dist-packages/changeo-0.3.12.egg-info/dependency_links.txt
-rw-r--r-- root/root         1 2018-06-17 19:14 ./usr/lib/python3/dist-packages/changeo-0.3.12.egg-info/not-zip-safe
-rw-r--r-- root/root        14 2018-06-17 19:14 ./usr/lib/python3/dist-packages/changeo-0.3.12.egg-info/requires.txt
-rw-r--r-- root/root         8 2018-06-17 19:14 ./usr/lib/python3/dist-packages/changeo-0.3.12.egg-info/top_level.txt
drwxr-xr-x root/root         0 2018-06-17 19:14 ./usr/share/
drwxr-xr-x root/root         0 2018-06-17 19:14 ./usr/share/doc/
drwxr-xr-x root/root         0 2018-06-17 19:14 ./usr/share/doc/changeo/
-rw-r--r-- root/root       222 2018-06-17 19:14 ./usr/share/doc/changeo/README.Debian
-rw-r--r-- root/root       158 2018-06-17 19:14 ./usr/share/doc/changeo/changelog.Debian.gz
-rw-r--r-- root/root     17119 2018-06-17 19:14 ./usr/share/doc/changeo/copyright
drwxr-xr-x root/root         0 2018-06-17 19:14 ./usr/share/lintian/
drwxr-xr-x root/root         0 2018-06-17 19:14 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       405 2018-06-17 19:14 ./usr/share/lintian/overrides/changeo

Timestamp: 17.06.2018 / 21:01:15 (UTC)