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canu_1.3+dfsg-1_amd64.changes (click to toggle)
Format:1.8
Date:Sun, 09 Oct 2016 21:53:18 -0700
Source:canu
Binary:canu
Architecture:source amd64
Version:1.3+dfsg-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Afif Elghraoui <afif@debian.org>
Description:
canu       - single molecule sequence assembler for genomes
Closes:395843
Changes:
canu (1.3+dfsg-1) unstable; urgency=medium

  * Initial release (Closes: #395843)
Files:
af81702998eb9a18eb10f2952eb16d8c 1940 science optional canu_1.3+dfsg-1.dsc
894bca64417c051f2a39d565aa0b8441 909317 science optional canu_1.3+dfsg.orig.tar.gz
80f4f3c9c30bf307fe2e6d5d7c325fed 5740 science optional canu_1.3+dfsg-1.debian.tar.xz
e8cff02657a0762dbdc0a0664545e636 13885238 debug extra canu-dbgsym_1.3+dfsg-1_amd64.deb
8acd993a7f825005d3f33ded89fa1bfe 1612626 science optional canu_1.3+dfsg-1_amd64.deb
canu_1.3+dfsg-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:canu
Binary:canu
Architecture:any
Version:1.3+dfsg-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Afif Elghraoui <afif@debian.org>
Homepage:http://canu.readthedocs.org/en/latest/
Standards-Version:3.9.8
Vcs-Browser:https://anonscm.debian.org/cgit/debian-med/canu.git
Vcs-Git:https://anonscm.debian.org/git/debian-med/canu.git
Build-Depends:debhelper (>=9), libboost-dev, libmeryl-dev, libfilesys-df-perl
Package-List:canu deb science optional arch=any
Files:
894bca64417c051f2a39d565aa0b8441 909317 canu_1.3+dfsg.orig.tar.gz
80f4f3c9c30bf307fe2e6d5d7c325fed 5740 canu_1.3+dfsg-1.debian.tar.xz
lintian check for canu_1.3+dfsg-1.dsc (click to toggle)
README.source for canu_1.3+dfsg-1.dsc (click to toggle)
No README.source in this package
control file for canu_1.3+dfsg-1_amd64.deb (click to toggle)
Package:canu
Version:1.3+dfsg-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:9305
Depends:libc6 (>=2.14), libgcc1 (>=1:3.0), libgomp1 (>=4.9), libstdc++6 (>=5.2), perl, libfilesys-df-perl, mhap (>=2.1)
Recommends:gnuplot
Suggests:pbgenomicconsensus, nanopolish
Section:science
Priority:optional
Homepage:http://canu.readthedocs.org/en/latest/
Description:
single molecule sequence assembler for genomes
 Canu is a fork of the Celera Assembler, designed for high-noise
 single-molecule sequencing (such as the PacBio RS II or Oxford
 Nanopore MinION).
 .
 Canu is a hierarchical assembly pipeline which runs in four steps:
 .
  * Detect overlaps in high-noise sequences using MHAP
  * Generate corrected sequence consensus
  * Trim corrected sequences
  * Assemble trimmed corrected sequences
lintian check for canu_1.3+dfsg-1_amd64.deb (click to toggle)
contents of canu_1.3+dfsg-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2016-10-10 04:53 ./
drwxr-xr-x root/root         0 2016-10-10 04:53 ./usr/
drwxr-xr-x root/root         0 2016-10-10 04:53 ./usr/bin/
drwxr-xr-x root/root         0 2016-10-10 04:53 ./usr/lib/
drwxr-xr-x root/root         0 2016-10-10 04:53 ./usr/lib/canu/
-rwxr-xr-x root/root   1220224 2016-10-10 04:53 ./usr/lib/canu/bogart
-rwxr-xr-x root/root    145984 2016-10-10 04:53 ./usr/lib/canu/bogus
-rwxr-xr-x root/root     92928 2016-10-10 04:53 ./usr/lib/canu/buildGraph
-rwxr-xr-x root/root     17899 2016-10-10 04:53 ./usr/lib/canu/canu
-rw-r--r-- root/root        83 2016-10-10 04:53 ./usr/lib/canu/canu.defaults
-rwxr-xr-x root/root    129824 2016-10-10 04:53 ./usr/lib/canu/correctOverlaps
-rwxr-xr-x root/root    179008 2016-10-10 04:53 ./usr/lib/canu/createFalconSenseInputs
-rwxr-xr-x root/root    109336 2016-10-10 04:53 ./usr/lib/canu/erateEstimate
-rwxr-xr-x root/root     96888 2016-10-10 04:53 ./usr/lib/canu/errorEstimate
-rwxr-xr-x root/root     72400 2016-10-10 04:53 ./usr/lib/canu/estimate-mer-threshold
-rwxr-xr-x root/root     60168 2016-10-10 04:53 ./usr/lib/canu/falcon_sense
-rwxr-xr-x root/root    104928 2016-10-10 04:53 ./usr/lib/canu/fastqAnalyze
-rwxr-xr-x root/root    117240 2016-10-10 04:53 ./usr/lib/canu/fastqSample
-rwxr-xr-x root/root     47672 2016-10-10 04:53 ./usr/lib/canu/fastqSimulate
-rwxr-xr-x root/root    100816 2016-10-10 04:53 ./usr/lib/canu/fastqSimulate-sort
-rwxr-xr-x root/root    174944 2016-10-10 04:53 ./usr/lib/canu/filterCorrectionOverlaps
-rwxr-xr-x root/root    220056 2016-10-10 04:53 ./usr/lib/canu/findErrors
-rwxr-xr-x root/root     14816 2016-10-10 04:53 ./usr/lib/canu/findErrors-Dump
-rwxr-xr-x root/root     72376 2016-10-10 04:53 ./usr/lib/canu/gatekeeperCreate
-rwxr-xr-x root/root     76528 2016-10-10 04:53 ./usr/lib/canu/gatekeeperDumpFASTQ
-rwxr-xr-x root/root     64176 2016-10-10 04:53 ./usr/lib/canu/gatekeeperDumpMetaData
-rwxr-xr-x root/root     60064 2016-10-10 04:53 ./usr/lib/canu/gatekeeperPartition
-rwxr-xr-x root/root    277408 2016-10-10 04:53 ./usr/lib/canu/generateCorrectionLayouts
-rwxr-xr-x root/root    261336 2016-10-10 04:53 ./usr/lib/canu/leaff
drwxr-xr-x root/root         0 2016-10-10 04:53 ./usr/lib/canu/lib/
-rw-r--r-- root/root   1310412 2016-10-10 04:53 ./usr/lib/canu/libcanu.a
-rw-r--r-- root/root    161996 2016-10-10 04:53 ./usr/lib/canu/libleaff.a
-rwxr-xr-x root/root    298200 2016-10-10 04:53 ./usr/lib/canu/meryl
-rwxr-xr-x root/root     23040 2016-10-10 04:53 ./usr/lib/canu/mhapConvert
-rwxr-xr-x root/root     23024 2016-10-10 04:53 ./usr/lib/canu/mmapConvert
-rwxr-xr-x root/root     97016 2016-10-10 04:53 ./usr/lib/canu/ovStoreBucketizer
-rwxr-xr-x root/root    113448 2016-10-10 04:53 ./usr/lib/canu/ovStoreBuild
-rwxr-xr-x root/root    113432 2016-10-10 04:53 ./usr/lib/canu/ovStoreDump
-rwxr-xr-x root/root     60112 2016-10-10 04:53 ./usr/lib/canu/ovStoreIndexer
-rwxr-xr-x root/root     72416 2016-10-10 04:53 ./usr/lib/canu/ovStoreSorter
-rwxr-xr-x root/root    125688 2016-10-10 04:53 ./usr/lib/canu/ovStoreStats
-rwxr-xr-x root/root     64072 2016-10-10 04:53 ./usr/lib/canu/overlapConvert
-rwxr-xr-x root/root     92760 2016-10-10 04:53 ./usr/lib/canu/overlapImport
-rwxr-xr-x root/root    142304 2016-10-10 04:53 ./usr/lib/canu/overlapInCore
-rwxr-xr-x root/root     68336 2016-10-10 04:53 ./usr/lib/canu/overlapInCorePartition
-rwxr-xr-x root/root    117656 2016-10-10 04:53 ./usr/lib/canu/overlapPair
-rwxr-xr-x root/root     23048 2016-10-10 04:53 ./usr/lib/canu/prefixEditDistance-matchLimitGenerate
-rwxr-xr-x root/root    281552 2016-10-10 04:53 ./usr/lib/canu/readConsensus
-rwxr-xr-x root/root    244824 2016-10-10 04:53 ./usr/lib/canu/simple
-rwxr-xr-x root/root    129824 2016-10-10 04:53 ./usr/lib/canu/splitReads
-rwxr-xr-x root/root     51872 2016-10-10 04:53 ./usr/lib/canu/tgStoreCompress
-rwxr-xr-x root/root    228168 2016-10-10 04:53 ./usr/lib/canu/tgStoreCoverageStat
-rwxr-xr-x root/root    326512 2016-10-10 04:53 ./usr/lib/canu/tgStoreDump
-rwxr-xr-x root/root     18904 2016-10-10 04:53 ./usr/lib/canu/tgStoreFilter
-rwxr-xr-x root/root     88808 2016-10-10 04:53 ./usr/lib/canu/tgStoreLoad
-rwxr-xr-x root/root    183080 2016-10-10 04:53 ./usr/lib/canu/tgTigDisplay
-rwxr-xr-x root/root    260992 2016-10-10 04:53 ./usr/lib/canu/trimReads
-rwxr-xr-x root/root    605440 2016-10-10 04:53 ./usr/lib/canu/utgcns
drwxr-xr-x root/root         0 2016-10-10 04:53 ./usr/share/
drwxr-xr-x root/root         0 2016-10-10 04:53 ./usr/share/doc/
drwxr-xr-x root/root         0 2016-10-10 04:53 ./usr/share/doc/canu/
-rw-r--r-- root/root       223 2016-05-31 18:31 ./usr/share/doc/canu/README.citation
-rw-r--r-- root/root      1447 2016-05-31 18:31 ./usr/share/doc/canu/README.md
-rw-r--r-- root/root       158 2016-10-10 04:53 ./usr/share/doc/canu/changelog.Debian.gz
-rw-r--r-- root/root      6962 2016-10-10 04:42 ./usr/share/doc/canu/copyright
drwxr-xr-x root/root         0 2016-10-10 04:53 ./usr/share/man/
drwxr-xr-x root/root         0 2016-10-10 04:53 ./usr/share/man/man1/
-rw-r--r-- root/root       325 2016-10-10 04:53 ./usr/share/man/man1/canu.1.gz
drwxr-xr-x root/root         0 2016-10-10 04:53 ./usr/share/perl5/
drwxr-xr-x root/root         0 2016-10-10 04:53 ./usr/share/perl5/canu/
-rw-r--r-- root/root     30418 2016-05-31 18:31 ./usr/share/perl5/canu/Configure.pm
-rw-r--r-- root/root     13958 2016-05-31 18:31 ./usr/share/perl5/canu/Consensus.pm
-rw-r--r-- root/root     49118 2016-05-31 18:31 ./usr/share/perl5/canu/CorrectReads.pm
-rw-r--r-- root/root     46029 2016-05-31 18:31 ./usr/share/perl5/canu/Defaults.pm
-rw-r--r-- root/root     10130 2016-05-31 18:31 ./usr/share/perl5/canu/ErrorEstimate.pm
-rw-r--r-- root/root     44258 2016-05-31 18:31 ./usr/share/perl5/canu/Execution.pm
-rw-r--r-- root/root     16139 2016-05-31 18:31 ./usr/share/perl5/canu/Gatekeeper.pm
-rw-r--r-- root/root      2215 2016-05-31 18:31 ./usr/share/perl5/canu/Grid.pm
-rw-r--r-- root/root      5518 2016-05-31 18:31 ./usr/share/perl5/canu/Grid_LSF.pm
-rw-r--r-- root/root      4339 2016-05-31 18:31 ./usr/share/perl5/canu/Grid_PBSTorque.pm
-rw-r--r-- root/root     11354 2016-05-31 18:31 ./usr/share/perl5/canu/Grid_SGE.pm
-rw-r--r-- root/root      4714 2016-05-31 18:31 ./usr/share/perl5/canu/Grid_Slurm.pm
-rw-r--r-- root/root     31075 2016-05-31 18:31 ./usr/share/perl5/canu/HTML.pm
-rw-r--r-- root/root     21402 2016-05-31 18:31 ./usr/share/perl5/canu/Meryl.pm
-rw-r--r-- root/root      5499 2016-05-31 18:31 ./usr/share/perl5/canu/Output.pm
-rw-r--r-- root/root      7257 2016-05-31 18:31 ./usr/share/perl5/canu/OverlapBasedTrimming.pm
-rw-r--r-- root/root     20908 2016-05-31 18:31 ./usr/share/perl5/canu/OverlapErrorAdjustment.pm
-rw-r--r-- root/root     15530 2016-05-31 18:31 ./usr/share/perl5/canu/OverlapInCore.pm
-rw-r--r-- root/root     21794 2016-05-31 18:31 ./usr/share/perl5/canu/OverlapMMap.pm
-rw-r--r-- root/root     28942 2016-10-10 04:53 ./usr/share/perl5/canu/OverlapMhap.pm
-rw-r--r-- root/root     24731 2016-05-31 18:31 ./usr/share/perl5/canu/OverlapStore.pm
-rw-r--r-- root/root      9636 2016-05-31 18:31 ./usr/share/perl5/canu/Unitig.pm
lrwxrwxrwx root/root         0 2016-10-10 04:53 ./usr/bin/canu -> ../lib/canu/canu
control file for canu-dbgsym_1.3+dfsg-1_amd64.deb (click to toggle)
Package:canu-dbgsym
Source:canu
Version:1.3+dfsg-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:14567
Depends:canu (=1.3+dfsg-1)
Section:debug
Priority:extra
Homepage:http://canu.readthedocs.org/en/latest/
Description:
Debug symbols for canu
Auto-Built-Package:debug-symbols
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lintian check for canu-dbgsym_1.3+dfsg-1_amd64.deb (click to toggle)
contents of canu-dbgsym_1.3+dfsg-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2016-10-10 04:53 ./
drwxr-xr-x root/root         0 2016-10-10 04:53 ./usr/
drwxr-xr-x root/root         0 2016-10-10 04:53 ./usr/lib/
drwxr-xr-x root/root         0 2016-10-10 04:53 ./usr/lib/debug/
drwxr-xr-x root/root         0 2016-10-10 04:53 ./usr/lib/debug/.build-id/
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lrwxrwxrwx root/root         0 2016-10-10 04:53 ./usr/share/doc/canu-dbgsym -> canu

Timestamp: 10.10.2016 / 06:01:31 (UTC)