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caftools_2.0.2-1_amd64.changes (click to toggle)
Format:1.8
Date:Thu, 23 Aug 2018 17:24:26 +0200
Source:caftools
Binary:caftools
Architecture:source amd64
Version:2.0.2-1
Distribution:experimental
Urgency:medium
Maintainer:Steffen Moeller <moeller@debian.org>
Changed-By:Steffen Moeller <moeller@debian.org>
Description:
caftools   - maintenance of DNA sequence assemblies
Closes:907179
Changes:
caftools (2.0.2-1) experimental; urgency=medium

  * Initial release (Closes: #907179)
Files:
4180358fed724b00dbca0a0735f1d76c 1889 non-free/science optional caftools_2.0.2-1.dsc
475e12a109cee5c64b43338ea8dc795d 2645554 non-free/science optional caftools_2.0.2.orig.tar.gz
8d1e40b7a003b08a715f386ca535bdef 5412 non-free/science optional caftools_2.0.2-1.debian.tar.xz
db6228f091c310b2e282a3d0c3551a7a 2287292 non-free/debug optional caftools-dbgsym_2.0.2-1_amd64.deb
56d1bd2cdca78a2bed9af5144d4d87f7 6193 non-free/science optional caftools_2.0.2-1_amd64.buildinfo
89ca651edb45756fc24fe2882f2136f9 225632 non-free/science optional caftools_2.0.2-1_amd64.deb
caftools_2.0.2-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:caftools
Binary:caftools
Architecture:any
Version:2.0.2-1
Maintainer:Steffen Moeller <moeller@debian.org>
Homepage:https://www.sanger.ac.uk/science/tools/caf
Standards-Version:4.2.0
Vcs-Browser:https://salsa.debian.org/med-team/caftools
Vcs-Git:https://salsa.debian.org/med-team/caftools.git
Build-Depends:debhelper (>=11), autotools-dev
Package-List:caftools deb non-free/science optional arch=any
Files:
475e12a109cee5c64b43338ea8dc795d 2645554 caftools_2.0.2.orig.tar.gz
8d1e40b7a003b08a715f386ca535bdef 5412 caftools_2.0.2-1.debian.tar.xz
lintian check for caftools_2.0.2-1.dsc (click to toggle)
W: caftools source: useless-autoreconf-build-depends autotools-dev
W: caftools source: file-without-copyright-information AUTHORS
W: caftools source: file-without-copyright-information COPYING
W: caftools source: file-without-copyright-information ChangeLog
W: caftools source: file-without-copyright-information Makefile.am
W: caftools source: file-without-copyright-information Makefile.in
W: caftools source: file-without-copyright-information NEWS
W: caftools source: file-without-copyright-information README
W: caftools source: file-without-copyright-information aclocal.m4
W: caftools source: file-without-copyright-information config/config.guess
W: caftools source: file-without-copyright-information config/config.sub
W: caftools source: file-without-copyright-information config/install-sh
W: caftools source: file-without-copyright-information config/missing
W: caftools source: file-without-copyright-information config/mkinstalldirs
W: caftools source: file-without-copyright-information configure
W: caftools source: file-without-copyright-information configure.in
W: caftools source: file-without-copyright-information man/Makefile.am
W: caftools source: file-without-copyright-information man/Makefile.in
W: caftools source: file-without-copyright-information tests/Makefile.am
W: caftools source: file-without-copyright-information tests/Makefile.in
W: caftools source: file-without-copyright-information tests/README
W: caftools source: file-without-copyright-information tests/test_caf2gap
W: caftools source: file-without-copyright-information tests/test_caf2phrap
W: caftools source: file-without-copyright-information tests/test_caf_build_consensus
W: caftools source: file-without-copyright-information tests/test_caf_depad
W: caftools source: file-without-copyright-information tests/test_caf_find_misassemblies
W: caftools source: file-without-copyright-information tests/test_caf_pad
W: caftools source: file-without-copyright-information tests/test_cafcat
W: caftools source: file-without-copyright-information tests/test_cafmerge
W: caftools source: file-without-copyright-information tests/test_data/TestTools.pm
W: caftools source: file-without-copyright-information tests/test_data/caf2phrap.caf
W: caftools source: file-without-copyright-information tests/test_data/caf2phrap.fasta
W: caftools source: file-without-copyright-information tests/test_data/caf2phrap.qual
W: caftools source: file-without-copyright-information tests/test_data/caf_build_consensus.caf
W: caftools source: file-without-copyright-information tests/test_data/caf_depad.caf
W: caftools source: file-without-copyright-information tests/test_data/caf_find_misassemblies.caf
W: caftools source: file-without-copyright-information tests/test_data/caf_pad.caf
W: caftools source: file-without-copyright-information tests/test_data/cafcat.caf
W: caftools source: file-without-copyright-information tests/test_data/cafmerge.caf
W: caftools source: file-without-copyright-information tests/test_data/nd_clip.caf
W: caftools source: file-without-copyright-information tests/test_data/nd_edit.caf
W: caftools source: file-without-copyright-information tests/test_data/ne_clip.caf
W: caftools source: file-without-copyright-information tests/test_data/np_edit.caf
W: caftools source: file-without-copyright-information tests/test_data/phrapcons.caf
W: caftools source: file-without-copyright-information tests/test_data/templates.out
W: caftools source: file-without-copyright-information tests/test_data/test.caf
W: caftools source: file-without-copyright-information tests/test_fix_quals
W: caftools source: file-without-copyright-information tests/test_nd_clip
W: caftools source: file-without-copyright-information tests/test_nd_edit
W: caftools source: file-without-copyright-information tests/test_ne_clip
W: caftools source: file-without-copyright-information tests/test_np_edit
W: caftools source: file-without-copyright-information tests/test_phrapcons
W: caftools source: file-without-copyright-information tests/test_scf2phd
W: caftools source: file-without-copyright-information tests/test_sdict
W: caftools source: file-without-copyright-information tests/test_templates
W: caftools source: newer-standards-version 4.2.0 (current is 4.1.4)
README.source for caftools_2.0.2-1.dsc (click to toggle)
caftools for Debian
------------------

Over time we need to investigate about how compatible the acedb directoy 
is with what we have of the acedb already.

These files are removed upon clean and probably should not be part of the
source tarball in the first place.
	Makefile.in
	aclocal.m4
	config/install-sh
	config/missing
	config/mkinstalldirs
	configure
	man/Makefile.in
	src/Makefile.in
	src/acedb/Makefile.in
	src/config.h.in
	src/libsrc/Makefile.in
	tests/Makefile.in


 -- Steffen Moeller <moeller@debian.org>  Thu, 23 Aug 2018 17:24:26 +0200

control file for caftools-dbgsym_2.0.2-1_amd64.deb (click to toggle)
Package:caftools-dbgsym
Source:caftools
Version:2.0.2-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Steffen Moeller <moeller@debian.org>
Installed-Size:2725
Depends:caftools (=2.0.2-1)
Section:non-free/debug
Priority:optional
Description:
debug symbols for caftools
Build-Ids:2de2e67b67981403114af3f575f8c80970d09cb2 44d45487733211a057406f8d2bef984084fe3caf 58c3bd483031cdd16e23b9e54b6e50a30b43762c 91f9a49f9641dc77deb5cd9d5af55ad9649be832 a24e40abe9f671e95b5382f492312ac2f2059f2e a3630dd51fdc8e096eaa60f2c8df9821401f347b b575c1d1a59a29f7b91b83bc3af8156ec10c4a7a ba58d7ec4148a4de40ccb6e5e9a8c006fc2be745 bfdea7cb72c7a3570283c939131bcc04eb8177a4 c7486579c9c6c4b58337d1ecb151b4cffe3fa8b7 ce105a8473f348e9f89b9683eb25c7562648f068 cf62d4292f5241caa780a5f6e560c2d2e5b106ba d9850ffec5ec056f1da80bdc80f3079e07516805 e59237b8b2a254b4667af41ad360a37a0a0bb758 fc9f121c5d976ccbaf0aa28f548c152611679dae
lintian check for caftools-dbgsym_2.0.2-1_amd64.deb (click to toggle)
contents of caftools-dbgsym_2.0.2-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2018-08-23 15:24 ./
drwxr-xr-x root/root         0 2018-08-23 15:24 ./usr/
drwxr-xr-x root/root         0 2018-08-23 15:24 ./usr/lib/
drwxr-xr-x root/root         0 2018-08-23 15:24 ./usr/lib/debug/
drwxr-xr-x root/root         0 2018-08-23 15:24 ./usr/lib/debug/.build-id/
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-rw-r--r-- root/root    204616 2018-08-23 15:24 ./usr/lib/debug/.build-id/44/d45487733211a057406f8d2bef984084fe3caf.debug
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-rw-r--r-- root/root    214136 2018-08-23 15:24 ./usr/lib/debug/.build-id/58/c3bd483031cdd16e23b9e54b6e50a30b43762c.debug
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-rw-r--r-- root/root    186672 2018-08-23 15:24 ./usr/lib/debug/.build-id/91/f9a49f9641dc77deb5cd9d5af55ad9649be832.debug
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-rw-r--r-- root/root    235168 2018-08-23 15:24 ./usr/lib/debug/.build-id/a2/4e40abe9f671e95b5382f492312ac2f2059f2e.debug
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-rw-r--r-- root/root    207344 2018-08-23 15:24 ./usr/lib/debug/.build-id/a3/630dd51fdc8e096eaa60f2c8df9821401f347b.debug
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-rw-r--r-- root/root    204616 2018-08-23 15:24 ./usr/lib/debug/.build-id/b5/75c1d1a59a29f7b91b83bc3af8156ec10c4a7a.debug
drwxr-xr-x root/root         0 2018-08-23 15:24 ./usr/lib/debug/.build-id/ba/
-rw-r--r-- root/root    157024 2018-08-23 15:24 ./usr/lib/debug/.build-id/ba/58d7ec4148a4de40ccb6e5e9a8c006fc2be745.debug
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-rw-r--r-- root/root    157384 2018-08-23 15:24 ./usr/lib/debug/.build-id/c7/486579c9c6c4b58337d1ecb151b4cffe3fa8b7.debug
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-rw-r--r-- root/root    208312 2018-08-23 15:24 ./usr/lib/debug/.build-id/cf/62d4292f5241caa780a5f6e560c2d2e5b106ba.debug
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-rw-r--r-- root/root    237248 2018-08-23 15:24 ./usr/lib/debug/.build-id/d9/850ffec5ec056f1da80bdc80f3079e07516805.debug
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-rw-r--r-- root/root     69888 2018-08-23 15:24 ./usr/lib/debug/.build-id/e5/9237b8b2a254b4667af41ad360a37a0a0bb758.debug
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drwxr-xr-x root/root         0 2018-08-23 15:24 ./usr/share/
drwxr-xr-x root/root         0 2018-08-23 15:24 ./usr/share/doc/
lrwxrwxrwx root/root         0 2018-08-23 15:24 ./usr/share/doc/caftools-dbgsym -> caftools
control file for caftools_2.0.2-1_amd64.deb (click to toggle)
Package:caftools
Version:2.0.2-1
Architecture:amd64
Maintainer:Steffen Moeller <moeller@debian.org>
Installed-Size:1897
Depends:libc6 (>=2.14)
Section:non-free/science
Priority:optional
Homepage:https://www.sanger.ac.uk/science/tools/caf
Description:
maintenance of DNA sequence assemblies
 This package contains code from different authors that allow sequence
 assemblies to be converted into formats such as CAF (Common Assembly
 Format) or GAP4.
 .
 CAF is a text format for describing sequence assemblies. It
 is acedb-compliant and is an extension of the ace-file format used
 earlier, but with support for base quality measures and a more extensive
 description of the Sequence data. CAF was designed during the Sanger
 sequencing era. Its modern-day successor is the SAM format, or its
 binary equivalents BAM and CRAM.
lintian check for caftools_2.0.2-1_amd64.deb (click to toggle)
W: caftools: binary-without-manpage usr/bin/caf2ace
W: caftools: binary-without-manpage usr/bin/caf2fastq
W: caftools: binary-without-manpage usr/bin/caf2gap
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W: caftools: binary-without-manpage usr/bin/caf_pad
W: caftools: binary-without-manpage usr/bin/cafcat
W: caftools: binary-without-manpage usr/bin/cafmerge
W: caftools: binary-without-manpage usr/bin/fix_quals
W: caftools: binary-without-manpage usr/bin/nd_clip
W: caftools: binary-without-manpage usr/bin/phrapcons
W: caftools: binary-without-manpage usr/bin/sdict
W: caftools: binary-without-manpage usr/bin/templates
contents of caftools_2.0.2-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2018-08-23 15:24 ./
drwxr-xr-x root/root         0 2018-08-23 15:24 ./usr/
drwxr-xr-x root/root         0 2018-08-23 15:24 ./usr/bin/
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-rwxr-xr-x root/root    109432 2018-08-23 15:24 ./usr/bin/caf_build_consensus
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-rwxr-xr-x root/root    129912 2018-08-23 15:24 ./usr/bin/cafcat
-rwxr-xr-x root/root    109432 2018-08-23 15:24 ./usr/bin/cafmerge
-rwxr-xr-x root/root    109432 2018-08-23 15:24 ./usr/bin/fix_quals
-rwxr-xr-x root/root    162680 2018-08-23 15:24 ./usr/bin/nd_clip
-rwxr-xr-x root/root    146296 2018-08-23 15:24 ./usr/bin/phrapcons
-rwxr-xr-x root/root     51200 2018-08-23 15:24 ./usr/bin/sdict
-rwxr-xr-x root/root    146296 2018-08-23 15:24 ./usr/bin/templates
drwxr-xr-x root/root         0 2018-08-23 15:24 ./usr/share/
drwxr-xr-x root/root         0 2018-08-23 15:24 ./usr/share/doc/
drwxr-xr-x root/root         0 2018-08-23 15:24 ./usr/share/doc/caftools/
-rw-r--r-- root/root      1017 2018-08-23 15:24 ./usr/share/doc/caftools/README.Debian
-rw-r--r-- root/root       161 2018-08-23 15:24 ./usr/share/doc/caftools/changelog.Debian.gz
-rw-r--r-- root/root        35 2018-08-23 15:24 ./usr/share/doc/caftools/changelog.gz
-rw-r--r-- root/root      2427 2018-08-23 15:24 ./usr/share/doc/caftools/copyright

Timestamp: 24.08.2018 / 16:01:11 (UTC)