Debian NEW package overview for breseq
breseq_0.35.5+ds-1_amd64.changes (click to toggle)
Format:1.8
Date:Sun, 27 Dec 2020 14:30:58 +0100
Source:breseq
Binary:breseq breseq-dbgsym
Architecture:source amd64
Version:0.35.5+ds-1
Distribution:unstable
Urgency:medium
Maintainer:Gürkan Myczko <gurkan@phys.ethz.ch>
Changed-By:Gürkan Myczko <gurkan@phys.ethz.ch>
Description:
breseq     - Find mutations relative to reference sequences
Closes:942845
Changes:
breseq (0.35.5+ds-1) unstable; urgency=medium

  * Initial release. (Closes: #942845)
Files:
5b12cfdf5f0a79f6c7dcd3aa37ddcb2e 1909 science optional breseq_0.35.5+ds-1.dsc
6841ad9c01180eb1da54304bc7d5f911 7108308 science optional breseq_0.35.5+ds.orig.tar.xz
ee375a49b83aa16f3ed4de74b095009b 4640 science optional breseq_0.35.5+ds-1.debian.tar.xz
62f7d0f9d6d24154e6b4ea96712b35c5 40120484 debug optional breseq-dbgsym_0.35.5+ds-1_amd64.deb
0c25ae5208fbe5319fd00760f1591aa9 8438 science optional breseq_0.35.5+ds-1_amd64.buildinfo
cc133c3e7d9d715a1836ad08e32e6ecd 1685472 science optional breseq_0.35.5+ds-1_amd64.deb
breseq_0.35.5+ds-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:breseq
Binary:breseq
Architecture:any
Version:0.35.5+ds-1
Maintainer:Gürkan Myczko <gurkan@phys.ethz.ch>
Homepage:https://barricklab.org/breseq
Standards-Version:4.5.1
Vcs-Browser:https://salsa.debian.org/myczko-guest/breseq
Vcs-Git:https://salsa.debian.org/myczko-guest/breseq.git
Build-Depends:debhelper-compat (=13), zlib1g-dev, libjs-jquery, libjs-underscore, r-base-core, bowtie2
Package-List:breseq deb science optional arch=any
Files:
6841ad9c01180eb1da54304bc7d5f911 7108308 breseq_0.35.5+ds.orig.tar.xz
ee375a49b83aa16f3ed4de74b095009b 4640 breseq_0.35.5+ds-1.debian.tar.xz
lintian 2.94.0~bpo10+1 check for breseq_0.35.5+ds-1.dsc (click to toggle)
README.source for breseq_0.35.5+ds-1.dsc (click to toggle)
No README.source in this package
control file for breseq_0.35.5+ds-1_amd64.deb (click to toggle)
Package:breseq
Version:0.35.5+ds-1
Architecture:amd64
Maintainer:Gürkan Myczko <gurkan@phys.ethz.ch>
Installed-Size:7059
Depends:libc6 (>=2.29), libgcc-s1 (>=3.0), libstdc++6 (>=9), zlib1g (>=1:1.2.0.2), bowtie2, r-base-core, libjs-jquery, libjs-underscore
Recommends:samtools
Section:science
Priority:optional
Homepage:https://barricklab.org/breseq
Description:
Find mutations relative to reference sequences
 This is a computational pipeline for finding mutations relative to a reference
 sequence in short-read DNA re-sequencing data for haploid microbial-sized
 genomes. It reports single-nucleotide mutations, point insertions and
 deletions, large deletions, and new junctions supported by mosaic reads
 (such as those produced by new mobile element insertions) in an annotated HTML
 format.
lintian 2.94.0~bpo10+1 check for breseq_0.35.5+ds-1_amd64.deb (click to toggle)
contents of breseq_0.35.5+ds-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-12-27 13:30 ./
drwxr-xr-x root/root         0 2020-12-27 13:30 ./usr/
drwxr-xr-x root/root         0 2020-12-27 13:30 ./usr/bin/
-rwxr-xr-x root/root   3613088 2020-12-27 13:30 ./usr/bin/breseq
-rwxr-xr-x root/root   3506592 2020-12-27 13:30 ./usr/bin/gdtools
drwxr-xr-x root/root         0 2020-12-27 13:30 ./usr/share/
drwxr-xr-x root/root         0 2020-12-27 13:30 ./usr/share/breseq/
-rw-r--r-- root/root     17441 2020-12-27 13:30 ./usr/share/breseq/breseq.png
-rw-r--r-- root/root      1685 2020-12-27 13:30 ./usr/share/breseq/breseq_small.png
-rw-r--r-- root/root      7543 2020-12-27 13:30 ./usr/share/breseq/combined_circos.conf
-rw-r--r-- root/root     12956 2020-12-27 13:30 ./usr/share/breseq/coverage_distribution.r
-rw-r--r-- root/root      2477 2020-12-27 13:30 ./usr/share/breseq/indels.conf
-rw-r--r-- root/root      3897 2020-12-27 13:30 ./usr/share/breseq/mobs.conf
-rw-r--r-- root/root      4203 2020-12-27 13:30 ./usr/share/breseq/mutations.conf
-rw-r--r-- root/root      5672 2020-12-27 13:30 ./usr/share/breseq/plot_coverage.r
-rw-r--r-- root/root      6157 2020-12-27 13:30 ./usr/share/breseq/plot_error_rate.r
-rwxr-xr-x root/root      1797 2020-12-27 13:30 ./usr/share/breseq/plot_jc_scores.r
-rw-r--r-- root/root      7453 2020-12-27 13:30 ./usr/share/breseq/polymorphism_statistics.r
-rwxr-xr-x root/root       327 2020-12-27 13:30 ./usr/share/breseq/run_circos.sh
drwxr-xr-x root/root         0 2020-12-27 13:30 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-12-27 13:30 ./usr/share/doc/breseq/
-rw-r--r-- root/root       168 2020-12-27 13:30 ./usr/share/doc/breseq/changelog.Debian.gz
-rw-r--r-- root/root      8450 2020-12-23 22:42 ./usr/share/doc/breseq/changelog.gz
-rw-r--r-- root/root      6053 2020-12-14 12:56 ./usr/share/doc/breseq/copyright
drwxr-xr-x root/root         0 2020-12-27 13:30 ./usr/share/man/
drwxr-xr-x root/root         0 2020-12-27 13:30 ./usr/share/man/man1/
-rw-r--r-- root/root       550 2020-12-27 13:30 ./usr/share/man/man1/breseq.1.gz
-rw-r--r-- root/root       284 2020-12-27 13:30 ./usr/share/man/man1/gdtools.1.gz
control file for breseq-dbgsym_0.35.5+ds-1_amd64.deb (click to toggle)
Package:breseq-dbgsym
Source:breseq
Version:0.35.5+ds-1
Auto-Built-Package:debug-symbols
Architecture:amd64
Maintainer:Gürkan Myczko <gurkan@phys.ethz.ch>
Installed-Size:41565
Depends:breseq (=0.35.5+ds-1)
Section:debug
Priority:optional
Description:
debug symbols for breseq
Build-Ids:02423f62d7e8add17b977de13f0758f2aa9ecc1f a5e3d1a84cbe5566a9f65104fc60629bf6217723
lintian 2.94.0~bpo10+1 check for breseq-dbgsym_0.35.5+ds-1_amd64.deb (click to toggle)
contents of breseq-dbgsym_0.35.5+ds-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2020-12-27 13:30 ./
drwxr-xr-x root/root         0 2020-12-27 13:30 ./usr/
drwxr-xr-x root/root         0 2020-12-27 13:30 ./usr/lib/
drwxr-xr-x root/root         0 2020-12-27 13:30 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-12-27 13:30 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-12-27 13:30 ./usr/lib/debug/.build-id/02/
-rw-r--r-- root/root  20101776 2020-12-27 13:30 ./usr/lib/debug/.build-id/02/423f62d7e8add17b977de13f0758f2aa9ecc1f.debug
drwxr-xr-x root/root         0 2020-12-27 13:30 ./usr/lib/debug/.build-id/a5/
-rw-r--r-- root/root  19140456 2020-12-27 13:30 ./usr/lib/debug/.build-id/a5/e3d1a84cbe5566a9f65104fc60629bf6217723.debug
drwxr-xr-x root/root         0 2020-12-27 13:30 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2020-12-27 13:30 ./usr/lib/debug/.dwz/x86_64-linux-gnu/
-rw-r--r-- root/root   3306440 2020-12-27 13:30 ./usr/lib/debug/.dwz/x86_64-linux-gnu/breseq.debug
drwxr-xr-x root/root         0 2020-12-27 13:30 ./usr/share/
drwxr-xr-x root/root         0 2020-12-27 13:30 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-12-27 13:30 ./usr/share/doc/breseq-dbgsym -> breseq

Timestamp: 14.04.2021 / 20:11:02 (UTC)