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bitseq_0.7.5+dfsg-1_amd64.changes (click to toggle)
Format:1.8
Date:Sat, 02 Dec 2017 12:41:04 +0100
Source:bitseq
Binary:bitseq
Architecture:source amd64
Version:0.7.5+dfsg-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Andreas Tille <tille@debian.org>
Description:
bitseq     - Bayesian Inference of Transcripts from Sequencing Data
Closes:883322
Changes:
bitseq (0.7.5+dfsg-1) unstable; urgency=medium

  * Initial upload to Debian (Closes: #883322)
Files:
94199f551cac016b689ec9c46dffd207 2045 science optional bitseq_0.7.5+dfsg-1.dsc
dbb476c736ab9e1384d55a41dd267336 79132 science optional bitseq_0.7.5+dfsg.orig.tar.xz
7c30a9f78da8afd16aec7b30a70e15e4 4652 science optional bitseq_0.7.5+dfsg-1.debian.tar.xz
018295a160e796ee60feef465e17acac 8956220 debug optional bitseq-dbgsym_0.7.5+dfsg-1_amd64.deb
4501d4a9258cc9c901011b83afeaed37 6235 science optional bitseq_0.7.5+dfsg-1_amd64.buildinfo
903b025109a3a93477da5dc66e527d13 331140 science optional bitseq_0.7.5+dfsg-1_amd64.deb
bitseq_0.7.5+dfsg-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:bitseq
Binary:bitseq
Architecture:any
Version:0.7.5+dfsg-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Tim Booth <tbooth@ceh.ac.uk>, Andreas Tille <tille@debian.org>
Homepage:https://github.com/BitSeq/BitSeq
Standards-Version:4.1.1
Vcs-Browser:https://anonscm.debian.org/cgit/debian-med/bitseq.git
Vcs-Git:https://anonscm.debian.org/git/debian-med/bitseq.git
Build-Depends:debhelper (>=10), zlib1g-dev, libbam-dev, libboost-dev, help2man, python
Package-List:bitseq deb science optional arch=any
Files:
dbb476c736ab9e1384d55a41dd267336 79132 bitseq_0.7.5+dfsg.orig.tar.xz
7c30a9f78da8afd16aec7b30a70e15e4 4652 bitseq_0.7.5+dfsg-1.debian.tar.xz
lintian check for bitseq_0.7.5+dfsg-1.dsc (click to toggle)
README.source for bitseq_0.7.5+dfsg-1.dsc (click to toggle)
No README.source in this package
control file for bitseq-dbgsym_0.7.5+dfsg-1_amd64.deb (click to toggle)
Package:bitseq-dbgsym
Source:bitseq
Version:0.7.5+dfsg-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:9216
Depends:bitseq (=0.7.5+dfsg-1)
Section:debug
Priority:optional
Description:
debug symbols for bitseq
Auto-Built-Package:debug-symbols
Build-Ids:0e0fb2351f77db16ab9305b67b80116209bbc478 2958cf4704515d89e2e3996e312581ec141fa56b 31e0a42bbd43896ed461cd0f0323daa302eb4ef7 6a2265f324537a87f92af334eae63256dadf9fc3 74100eb51f4a8378742907dc660ed92287d2a1b4 850cb3d701e40ec2c4b29d103a693e3cb775c17b a0c649b424d52634231fa41eadbaadfd9dc36394 a8d726f1c819d7b2857c891871191458a1865095 dbe864579d6aed410a5309041d2d1aa1a4b885de dc5e535afb984d9584ddd5bf8db2cdbc54ad869b e0c5b035df61139391cddc92c3fd223edc61da1a ebfab4d21f6c9f98ca6b4b5c761d0317ed4c9dbd ec0940b327b531409031467e5e3ffa7b64a7af83
lintian check for bitseq-dbgsym_0.7.5+dfsg-1_amd64.deb (click to toggle)
contents of bitseq-dbgsym_0.7.5+dfsg-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2017-12-02 11:41 ./
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/lib/
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/lib/debug/
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/lib/debug/.build-id/0e/
-rw-r--r-- root/root    579984 2017-12-02 11:41 ./usr/lib/debug/.build-id/0e/0fb2351f77db16ab9305b67b80116209bbc478.debug
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/lib/debug/.build-id/29/
-rw-r--r-- root/root    625776 2017-12-02 11:41 ./usr/lib/debug/.build-id/29/58cf4704515d89e2e3996e312581ec141fa56b.debug
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/lib/debug/.build-id/31/
-rw-r--r-- root/root    512840 2017-12-02 11:41 ./usr/lib/debug/.build-id/31/e0a42bbd43896ed461cd0f0323daa302eb4ef7.debug
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/lib/debug/.build-id/6a/
-rw-r--r-- root/root    700000 2017-12-02 11:41 ./usr/lib/debug/.build-id/6a/2265f324537a87f92af334eae63256dadf9fc3.debug
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/lib/debug/.build-id/74/
-rw-r--r-- root/root    728880 2017-12-02 11:41 ./usr/lib/debug/.build-id/74/100eb51f4a8378742907dc660ed92287d2a1b4.debug
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/lib/debug/.build-id/85/
-rw-r--r-- root/root    744136 2017-12-02 11:41 ./usr/lib/debug/.build-id/85/0cb3d701e40ec2c4b29d103a693e3cb775c17b.debug
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/lib/debug/.build-id/a0/
-rw-r--r-- root/root   1048712 2017-12-02 11:41 ./usr/lib/debug/.build-id/a0/c649b424d52634231fa41eadbaadfd9dc36394.debug
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/lib/debug/.build-id/a8/
-rw-r--r-- root/root    635776 2017-12-02 11:41 ./usr/lib/debug/.build-id/a8/d726f1c819d7b2857c891871191458a1865095.debug
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/lib/debug/.build-id/db/
-rw-r--r-- root/root    990168 2017-12-02 11:41 ./usr/lib/debug/.build-id/db/e864579d6aed410a5309041d2d1aa1a4b885de.debug
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/lib/debug/.build-id/dc/
-rw-r--r-- root/root    803768 2017-12-02 11:41 ./usr/lib/debug/.build-id/dc/5e535afb984d9584ddd5bf8db2cdbc54ad869b.debug
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/lib/debug/.build-id/e0/
-rw-r--r-- root/root    630552 2017-12-02 11:41 ./usr/lib/debug/.build-id/e0/c5b035df61139391cddc92c3fd223edc61da1a.debug
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/lib/debug/.build-id/eb/
-rw-r--r-- root/root    610664 2017-12-02 11:41 ./usr/lib/debug/.build-id/eb/fab4d21f6c9f98ca6b4b5c761d0317ed4c9dbd.debug
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/lib/debug/.build-id/ec/
-rw-r--r-- root/root    798288 2017-12-02 11:41 ./usr/lib/debug/.build-id/ec/0940b327b531409031467e5e3ffa7b64a7af83.debug
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/share/
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/share/doc/
lrwxrwxrwx root/root         0 2017-12-02 11:41 ./usr/share/doc/bitseq-dbgsym -> bitseq
control file for bitseq_0.7.5+dfsg-1_amd64.deb (click to toggle)
Package:bitseq
Version:0.7.5+dfsg-1
Architecture:amd64
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:1791
Depends:libc6 (>=2.23), libgcc1 (>=1:3.0), libgomp1 (>=4.9), libstdc++6 (>=5.2), zlib1g (>=1:1.2.3.3), python
Suggests:samtools
Section:science
Priority:optional
Homepage:https://github.com/BitSeq/BitSeq
Description:
Bayesian Inference of Transcripts from Sequencing Data
 BitSeq is an application for inferring expression levels of individual
 transcripts from sequencing (RNA-Seq) data and estimating differential
 expression (DE) between conditions. An advantage of this approach is the
 ability to account for both technical uncertainty and intrinsic biological
 variance in order to avoid false DE calls. The technical contribution to the
 uncertainty comes both from finite read-depth and the possibly ambiguous
 mapping of reads to multiple transcripts.
lintian check for bitseq_0.7.5+dfsg-1_amd64.deb (click to toggle)
W: bitseq: binary-without-manpage usr/bin/biocUpdate
W: bitseq: binary-without-manpage usr/bin/checkTR
contents of bitseq_0.7.5+dfsg-1_amd64.deb (click to toggle)
drwxr-xr-x root/root         0 2017-12-02 11:41 ./
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/bin/
-rwxr-xr-x root/root     96408 2017-12-02 11:41 ./usr/bin/convertSamples
-rwxr-xr-x root/root    141464 2017-12-02 11:41 ./usr/bin/estimateDE
-rwxr-xr-x root/root    178328 2017-12-02 11:41 ./usr/bin/estimateExpression
-rwxr-xr-x root/root    157848 2017-12-02 11:41 ./usr/bin/estimateHyperPar
-rwxr-xr-x root/root    149656 2017-12-02 11:41 ./usr/bin/estimateVBExpression
-rwxr-xr-x root/root    104600 2017-12-02 11:41 ./usr/bin/extractSamples
-rwxr-xr-x root/root    100504 2017-12-02 11:41 ./usr/bin/getFoldChange
-rwxr-xr-x root/root    108696 2017-12-02 11:41 ./usr/bin/getGeneExpression
-rwxr-xr-x root/root    112792 2017-12-02 11:41 ./usr/bin/getPPLR
-rwxr-xr-x root/root    108696 2017-12-02 11:41 ./usr/bin/getVariance
-rwxr-xr-x root/root    116888 2017-12-02 11:41 ./usr/bin/getWithinGeneExpression
-rwxr-xr-x root/root    306792 2017-12-02 11:41 ./usr/bin/parseAlignment
-rwxr-xr-x root/root     75928 2017-12-02 11:41 ./usr/bin/transposeLargeFile
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/lib/
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/lib/debian-med/
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/lib/debian-med/bin/
-rwxr-xr-x root/root       521 2014-03-04 23:44 ./usr/lib/debian-med/bin/biocUpdate.sh
-rwxr-xr-x root/root      2099 2014-03-04 23:44 ./usr/lib/debian-med/bin/checkTR.py
-rwxr-xr-x root/root      2653 2014-03-04 23:44 ./usr/lib/debian-med/bin/extractTranscriptInfo.py
-rwxr-xr-x root/root      2759 2014-03-04 23:44 ./usr/lib/debian-med/bin/getCounts.py
-rwxr-xr-x root/root     17252 2014-03-04 23:44 ./usr/lib/debian-med/bin/parseAlignment.py
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/share/
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/share/doc/
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/share/doc/bitseq/
-rw-r--r-- root/root       898 2017-12-02 11:41 ./usr/share/doc/bitseq/README.Debian
-rw-r--r-- root/root       314 2017-12-02 11:41 ./usr/share/doc/bitseq/changelog.Debian.gz
-rw-r--r-- root/root       984 2017-12-02 11:41 ./usr/share/doc/bitseq/copyright
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/share/man/
drwxr-xr-x root/root         0 2017-12-02 11:41 ./usr/share/man/man1/
-rw-r--r-- root/root       620 2017-12-02 11:41 ./usr/share/man/man1/convertSamples.1.gz
-rw-r--r-- root/root       759 2017-12-02 11:41 ./usr/share/man/man1/estimateDE.1.gz
-rw-r--r-- root/root      1185 2017-12-02 11:41 ./usr/share/man/man1/estimateExpression.1.gz
-rw-r--r-- root/root      1002 2017-12-02 11:41 ./usr/share/man/man1/estimateHyperPar.1.gz
-rw-r--r-- root/root       863 2017-12-02 11:41 ./usr/share/man/man1/estimateVBExpression.1.gz
-rw-r--r-- root/root       510 2017-12-02 11:41 ./usr/share/man/man1/extractSamples.1.gz
-rw-r--r-- root/root       525 2017-12-02 11:41 ./usr/share/man/man1/extractTranscriptInfo.1.gz
-rw-r--r-- root/root       329 2017-12-02 11:41 ./usr/share/man/man1/getCounts.1.gz
-rw-r--r-- root/root       464 2017-12-02 11:41 ./usr/share/man/man1/getFoldChange.1.gz
-rw-r--r-- root/root       706 2017-12-02 11:41 ./usr/share/man/man1/getGeneExpression.1.gz
-rw-r--r-- root/root       735 2017-12-02 11:41 ./usr/share/man/man1/getPPLR.1.gz
-rw-r--r-- root/root       581 2017-12-02 11:41 ./usr/share/man/man1/getVariance.1.gz
-rw-r--r-- root/root       800 2017-12-02 11:41 ./usr/share/man/man1/getWithinGeneExpression.1.gz
-rw-r--r-- root/root      1252 2017-12-02 11:41 ./usr/share/man/man1/parseAlignment.1.gz
-rw-r--r-- root/root       415 2017-12-02 11:41 ./usr/share/man/man1/transposeLargeFile.1.gz
lrwxrwxrwx root/root         0 2017-12-02 11:41 ./usr/bin/biocUpdate -> ../lib/debian-med/bin/biocUpdate.sh
lrwxrwxrwx root/root         0 2017-12-02 11:41 ./usr/bin/checkTR -> ../lib/debian-med/bin/checkTR.py
lrwxrwxrwx root/root         0 2017-12-02 11:41 ./usr/bin/extractTranscriptInfo -> ../lib/debian-med/bin/extractTranscriptInfo.py
lrwxrwxrwx root/root         0 2017-12-02 11:41 ./usr/bin/getCounts -> ../lib/debian-med/bin/getCounts.py

Timestamp: 02.12.2017 / 13:01:13 (UTC)