Debian NEW package overview for bifrost
| bifrost_1.3.0-1_amd64.changes (click to toggle) | |
|---|---|
| Format: | 1.8 |
| Date: | Wed, 08 Nov 2023 19:53:14 +0100 |
| Source: | bifrost |
| Binary: | bifrost bifrost-dbgsym libbifrost-dev libbifrost0 libbifrost0-dbgsym |
| Architecture: | source amd64 |
| Version: | 1.3.0-1 |
| Distribution: | unstable |
| Urgency: | medium |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Changed-By: | Andreas Tille <tille@debian.org> |
| Description: | bifrost - parallel construction, indexing and querying of de Bruijn graphs libbifrost-dev - library for parallel construction, indexing and querying of de Br libbifrost0 - library for parallel construction, indexing and querying of de Br |
| Closes: | 1055593 |
| Changes: | bifrost (1.3.0-1) unstable; urgency=medium * Initial release (Closes: #1055593) |
| Files: | 6c7d38d99652a6f27a89720dbf2c388b 2100 science optional bifrost_1.3.0-1.dsc 006304debd98bfb2d6087091609b1404 349405 science optional bifrost_1.3.0.orig.tar.gz a084480067b72692bef4342518b46e2c 246424 science optional bifrost_1.3.0-1.debian.tar.xz b200e7877a3897e11468ee2c9316a65d 2585932 debug optional bifrost-dbgsym_1.3.0-1_amd64.deb 3c130b6e6ebc5c66f57410ba90ff0139 8158 science optional bifrost_1.3.0-1_amd64.buildinfo 7fdb361020773f1f36a5d2042f1c2a26 505740 science optional bifrost_1.3.0-1_amd64.deb 319bd2a114a698a3c68015e26d2a5ad3 596120 libdevel optional libbifrost-dev_1.3.0-1_amd64.deb b351b2950b8e4a8746ff97f760b9d9cd 3617164 debug optional libbifrost0-dbgsym_1.3.0-1_amd64.deb cff820be524476972da7d00773caf841 420748 libs optional libbifrost0_1.3.0-1_amd64.deb |
| bifrost_1.3.0-1.dsc (click to toggle) | |
|---|---|
| Format: | 3.0 (quilt) |
| Source: | bifrost |
| Binary: | bifrost, libbifrost0, libbifrost-dev |
| Architecture: | any |
| Version: | 1.3.0-1 |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Uploaders: | Andreas Tille <tille@debian.org> |
| Homepage: | https://github.com/pmelsted/bifrost |
| Standards-Version: | 4.6.2 |
| Vcs-Browser: | https://salsa.debian.org/med-team/bifrost |
| Vcs-Git: | https://salsa.debian.org/med-team/bifrost.git |
| Testsuite: | autopkgtest |
| Build-Depends: | debhelper-compat (=13), d-shlibs, cmake, zlib1g-dev |
| Package-List: | bifrost deb science optional arch=any libbifrost-dev deb libdevel optional arch=any libbifrost0 deb libs optional arch=any |
| Files: | 006304debd98bfb2d6087091609b1404 349405 bifrost_1.3.0.orig.tar.gz a084480067b72692bef4342518b46e2c 246424 bifrost_1.3.0-1.debian.tar.xz |
| control file for bifrost_1.3.0-1_amd64.deb (click to toggle) | |
|---|---|
| Package: | bifrost |
| Version: | 1.3.0-1 |
| Architecture: | amd64 |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Installed-Size: | 1200 |
| Depends: | libbifrost0 (>=1.3.0), libc6 (>=2.34), libgcc-s1 (>=3.0), libstdc++6 (>=13.1), zlib1g (>=1:1.1.4) |
| Section: | science |
| Priority: | optional |
| Homepage: | https://github.com/pmelsted/bifrost |
| Description: | parallel construction, indexing and querying of de Bruijn graphs Bifrost is a command-line tool for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in. . * Build, index, color and query the compacted de Bruijn graph * No need to build the uncompacted de Bruijn graph * Reads or assembled genomes as input * Output graph in GFA (can be visualized with Bandage), FASTA or binary * Graph cleaning: short tip clipping, etc. * Multi-threaded * No parameters to estimate with other tools * Exact or approximate k-mer search of queries |
| contents of bifrost_1.3.0-1_amd64.deb (click to toggle) | |
|---|---|
drwxr-xr-x root/root 0 2023-11-08 18:53 ./ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/bin/ -rwxr-xr-x root/root 969880 2023-11-08 18:53 ./usr/bin/Bifrost drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/share/ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/share/doc/bifrost/ -rw-r--r-- root/root 156 2023-11-08 18:53 ./usr/share/doc/bifrost/changelog.Debian.gz -rw-r--r-- root/root 1711 2023-10-10 13:54 ./usr/share/doc/bifrost/changelog.gz -rw-r--r-- root/root 5698 2023-11-08 18:53 ./usr/share/doc/bifrost/copyright drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/share/doc/bifrost/examples/ -rw-r--r-- root/root 117637 2023-11-08 18:53 ./usr/share/doc/bifrost/examples/ecoli_1K_1.fq.gz -rw-r--r-- root/root 122020 2023-11-08 18:53 ./usr/share/doc/bifrost/examples/ecoli_1K_2.fq.gz | |
| copyright of bifrost_1.3.0-1_amd64.deb (click to toggle) | |
|---|---|
Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: bifrost
Source: https://github.com/pmelsted/bifrost
Files: *
Copyright: 2018-2023 Pall Melsted, Guillaume Holley
License: BSD-2-clause
Files: src/zstr.hpp
Copyright: 2015 Ontario Institute for Cancer Research
License: BSD-2-clause
Files: src/kseq.h
Copyright: 2008, 2009, 2011 Attractive Chaos <attractor@live.co.uk>
License: MIT
Permission is hereby granted, free of charge, to any person obtaining
a copy of this software and associated documentation files (the
"Software"), to deal in the Software without restriction, including
without limitation the rights to use, copy, modify, merge, publish,
distribute, sublicense, and/or sell copies of the Software, and to
permit persons to whom the Software is furnished to do so, subject to
the following conditions:
.
The above copyright notice and this permission notice shall be
included in all copies or substantial portions of the Software.
.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
Files: src/libpopcnt.h
Copyright: 2016-2017 Kim Walisch, Wojciech Muła
License: BSD-2-clause
Files: src/wyhash.h
Copyright: 2019-2022 Wang Yi <godspeed_china@yeah.net>
License: public_domain
This is free and unencumbered software released into the public domain.
.
Anyone is free to copy, modify, publish, use, compile, sell, or
distribute this software, either in source code form or as a compiled
binary, for any purpose, commercial or non-commercial, and by any
means.
.
In jurisdictions that recognize copyright laws, the author or authors
of this software dedicate any and all copyright interest in the
software to the public domain. We make this dedication for the benefit
of the public at large and to the detriment of our heirs and
successors. We intend this dedication to be an overt act of
relinquishment in perpetuity of all present and future rights to this
software under copyright law.
.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
IN NO EVENT SHALL THE AUTHORS BE LIABLE FOR ANY CLAIM, DAMAGES OR
OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE,
ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
OTHER DEALINGS IN THE SOFTWARE.
.
For more information, please refer to <http://unlicense.org/>
Files: src/getRSS.h
Copyright: David Robert Nadeau
License: CC-BY-SA-3.0
You are free to:
.
Share — copy and redistribute the material in any medium or format for any
purpose, even commercially.
.
Adapt — remix, transform, and build upon the material for any purpose, even
commercially.
.
The licensor cannot revoke these freedoms as long as you follow the license terms.
.
Under the following terms:
Attribution - You must give appropriate credit , provide a link to the license,
and indicate if changes were made . You may do so in any
reasonable manner, but not in any way that suggests the licensor
endorses you or your use.
.
No additional restrictions - You may not apply legal terms or technological
measures that legally restrict others from doing anything the
license permits.
.
Notices:
You do not have to comply with the license for elements of the material in the
public domain or where your use is permitted by an applicable exception or
limitation.
.
No warranties are given. The license may not give you all of the permissions
necessary for your intended use. For example, other rights such as publicity,
privacy, or moral rights may limit how you use the material.
Comments: http://creativecommons.org/licenses/by/3.0/deed.en_US
Modifications have been made from the original code
Files: debian/*
Copyright: 2023 Andreas Tille <tille@debian.org>
License: BSD-2-clause
License: BSD-2-clause
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
.
* Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
.
* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
| |
| control file for bifrost-dbgsym_1.3.0-1_amd64.deb (click to toggle) | |
|---|---|
| Package: | bifrost-dbgsym |
| Source: | bifrost |
| Version: | 1.3.0-1 |
| Auto-Built-Package: | debug-symbols |
| Architecture: | amd64 |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Installed-Size: | 2680 |
| Depends: | bifrost (=1.3.0-1) |
| Section: | debug |
| Priority: | optional |
| Description: | debug symbols for bifrost |
| Build-Ids: | 4b31a2eee7c49cd1e4cbcba0f256cfd6589d762a |
| contents of bifrost-dbgsym_1.3.0-1_amd64.deb (click to toggle) | |
|---|---|
drwxr-xr-x root/root 0 2023-11-08 18:53 ./ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/lib/ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/lib/debug/ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/lib/debug/.build-id/4b/ -rw-r--r-- root/root 2733440 2023-11-08 18:53 ./usr/lib/debug/.build-id/4b/31a2eee7c49cd1e4cbcba0f256cfd6589d762a.debug drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/share/ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/share/doc/ lrwxrwxrwx root/root 0 2023-11-08 18:53 ./usr/share/doc/bifrost-dbgsym -> bifrost | |
| copyright of bifrost-dbgsym_1.3.0-1_amd64.deb (click to toggle) | |
|---|---|
WARNING: No copyright found, please check package manually. | |
| control file for libbifrost-dev_1.3.0-1_amd64.deb (click to toggle) | |
|---|---|
| Package: | libbifrost-dev |
| Source: | bifrost |
| Version: | 1.3.0-1 |
| Architecture: | amd64 |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Installed-Size: | 3827 |
| Depends: | libbifrost0 (=1.3.0-1) |
| Section: | libdevel |
| Priority: | optional |
| Homepage: | https://github.com/pmelsted/bifrost |
| Description: | library for parallel construction, indexing and querying of de Bruijn graphs Libbifrost-dev is the development library for the command-line tool bifrost for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in. . * Build, index, color and query the compacted de Bruijn graph * No need to build the uncompacted de Bruijn graph * Reads or assembled genomes as input * Output graph in GFA (can be visualized with Bandage), FASTA or binary * Graph cleaning: short tip clipping, etc. * Multi-threaded * No parameters to estimate with other tools * Exact or approximate k-mer search of queries |
| contents of libbifrost-dev_1.3.0-1_amd64.deb (click to toggle) | |
|---|---|
drwxr-xr-x root/root 0 2023-11-08 18:53 ./ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/include/ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/include/bifrost/ -rw-r--r-- root/root 6175 2023-10-10 13:54 ./usr/include/bifrost/BitContainer.hpp -rw-r--r-- root/root 11229 2023-10-10 13:54 ./usr/include/bifrost/BlockedBloomFilter.hpp -rw-r--r-- root/root 19307 2023-10-10 13:54 ./usr/include/bifrost/ColorSet.hpp -rw-r--r-- root/root 24376 2023-10-10 13:54 ./usr/include/bifrost/ColoredCDBG.hpp -rw-r--r-- root/root 65110 2023-10-10 13:54 ./usr/include/bifrost/ColoredCDBG.tcc -rw-r--r-- root/root 6184 2023-10-10 13:54 ./usr/include/bifrost/Common.hpp -rw-r--r-- root/root 50826 2023-10-10 13:54 ./usr/include/bifrost/CompactedDBG.hpp -rw-r--r-- root/root 287697 2023-10-10 13:54 ./usr/include/bifrost/CompactedDBG.tcc -rw-r--r-- root/root 5899 2023-10-10 13:54 ./usr/include/bifrost/CompressedCoverage.hpp -rw-r--r-- root/root 5246 2023-10-10 13:54 ./usr/include/bifrost/CompressedSequence.hpp -rw-r--r-- root/root 8394 2023-10-10 13:54 ./usr/include/bifrost/DataAccessor.hpp -rw-r--r-- root/root 12107 2023-10-10 13:54 ./usr/include/bifrost/DataAccessor.tcc -rw-r--r-- root/root 239 2023-10-10 13:54 ./usr/include/bifrost/DataManager.hpp -rw-r--r-- root/root 3366 2023-10-10 13:54 ./usr/include/bifrost/DataStorage.hpp -rw-r--r-- root/root 61690 2023-10-10 13:54 ./usr/include/bifrost/DataStorage.tcc -rw-r--r-- root/root 1281 2023-10-10 13:54 ./usr/include/bifrost/FASTX_Parser.hpp -rw-r--r-- root/root 8378 2023-10-10 13:54 ./usr/include/bifrost/File_Parser.hpp -rw-r--r-- root/root 3727 2023-10-10 13:54 ./usr/include/bifrost/GFA_Parser.hpp -rw-r--r-- root/root 71328 2023-10-10 13:54 ./usr/include/bifrost/IO.tcc -rw-r--r-- root/root 10505 2023-10-10 13:54 ./usr/include/bifrost/Kmer.hpp -rw-r--r-- root/root 4436 2023-10-10 13:54 ./usr/include/bifrost/KmerCovIndex.hpp -rw-r--r-- root/root 16704 2023-10-10 13:54 ./usr/include/bifrost/KmerCovIndex.tcc -rw-r--r-- root/root 34550 2023-10-10 13:54 ./usr/include/bifrost/KmerHashTable.hpp -rw-r--r-- root/root 5053 2023-10-10 13:54 ./usr/include/bifrost/KmerIterator.hpp -rw-r--r-- root/root 42009 2023-10-10 13:54 ./usr/include/bifrost/KmerStream.hpp -rw-r--r-- root/root 2572 2023-10-10 13:54 ./usr/include/bifrost/Lock.hpp -rw-r--r-- root/root 10780 2023-10-10 13:54 ./usr/include/bifrost/MinimizerIndex.hpp -rw-r--r-- root/root 8681 2023-10-10 13:54 ./usr/include/bifrost/NeighborIterator.hpp -rw-r--r-- root/root 4310 2023-10-10 13:54 ./usr/include/bifrost/NeighborIterator.tcc -rw-r--r-- root/root 8699 2023-10-10 13:54 ./usr/include/bifrost/RepHash.hpp -rw-r--r-- root/root 48706 2023-10-10 13:54 ./usr/include/bifrost/Search.tcc -rw-r--r-- root/root 11558 2023-10-10 13:54 ./usr/include/bifrost/StreamCounter.hpp -rw-r--r-- root/root 4969 2023-10-10 13:54 ./usr/include/bifrost/TinyBitmap.hpp -rw-r--r-- root/root 11702 2023-10-10 13:54 ./usr/include/bifrost/TinyVector.hpp -rw-r--r-- root/root 2946 2023-10-10 13:54 ./usr/include/bifrost/Unitig.hpp -rw-r--r-- root/root 4241 2023-10-10 13:54 ./usr/include/bifrost/UnitigIterator.hpp -rw-r--r-- root/root 3455 2023-10-10 13:54 ./usr/include/bifrost/UnitigIterator.tcc -rw-r--r-- root/root 16005 2023-10-10 13:54 ./usr/include/bifrost/UnitigMap.hpp -rw-r--r-- root/root 13026 2023-10-10 13:54 ./usr/include/bifrost/UnitigMap.tcc -rw-r--r-- root/root 5682 2023-10-10 13:54 ./usr/include/bifrost/fastmod.h -rw-r--r-- root/root 3830 2023-10-10 13:54 ./usr/include/bifrost/getRSS.h -rw-r--r-- root/root 8634 2023-10-10 13:54 ./usr/include/bifrost/kseq.h -rw-r--r-- root/root 13845 2023-10-10 13:54 ./usr/include/bifrost/libpopcnt.h -rw-r--r-- root/root 20646 2023-10-10 13:54 ./usr/include/bifrost/minHashIterator.hpp -rw-r--r-- root/root 274808 2023-10-10 13:54 ./usr/include/bifrost/roaring.h -rw-r--r-- root/root 56764 2023-10-10 13:54 ./usr/include/bifrost/roaring.hh -rw-r--r-- root/root 13229 2023-10-10 13:54 ./usr/include/bifrost/rw_spin_lock.h -rw-r--r-- root/root 7760 2023-10-10 13:54 ./usr/include/bifrost/strict_fstream.hpp -rw-r--r-- root/root 11838 2023-10-10 13:54 ./usr/include/bifrost/wyhash.h -rw-r--r-- root/root 16715 2023-10-10 13:54 ./usr/include/bifrost/zstr.hpp drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/lib/ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/lib/x86_64-linux-gnu/ -rw-r--r-- root/root 2521066 2023-11-08 18:53 ./usr/lib/x86_64-linux-gnu/libbifrost.a drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/share/ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/share/doc/libbifrost-dev/ -rw-r--r-- root/root 156 2023-11-08 18:53 ./usr/share/doc/libbifrost-dev/changelog.Debian.gz -rw-r--r-- root/root 1711 2023-10-10 13:54 ./usr/share/doc/libbifrost-dev/changelog.gz -rw-r--r-- root/root 5698 2023-11-08 18:53 ./usr/share/doc/libbifrost-dev/copyright lrwxrwxrwx root/root 0 2023-11-08 18:53 ./usr/lib/x86_64-linux-gnu/libbifrost.so -> libbifrost.so.0 | |
| copyright of libbifrost-dev_1.3.0-1_amd64.deb (click to toggle) | |
|---|---|
NOTE: Copyright is the same as bifrost (bifrost_1.3.0-1_amd64.deb). Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: bifrost
Source: https://github.com/pmelsted/bifrost
Files: *
Copyright: 2018-2023 Pall Melsted, Guillaume Holley
License: BSD-2-clause
Files: src/zstr.hpp
Copyright: 2015 Ontario Institute for Cancer Research
License: BSD-2-clause
Files: src/kseq.h
Copyright: 2008, 2009, 2011 Attractive Chaos <attractor@live.co.uk>
License: MIT
Permission is hereby granted, free of charge, to any person obtaining
a copy of this software and associated documentation files (the
"Software"), to deal in the Software without restriction, including
without limitation the rights to use, copy, modify, merge, publish,
distribute, sublicense, and/or sell copies of the Software, and to
permit persons to whom the Software is furnished to do so, subject to
the following conditions:
.
The above copyright notice and this permission notice shall be
included in all copies or substantial portions of the Software.
.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
Files: src/libpopcnt.h
Copyright: 2016-2017 Kim Walisch, Wojciech Muła
License: BSD-2-clause
Files: src/wyhash.h
Copyright: 2019-2022 Wang Yi <godspeed_china@yeah.net>
License: public_domain
This is free and unencumbered software released into the public domain.
.
Anyone is free to copy, modify, publish, use, compile, sell, or
distribute this software, either in source code form or as a compiled
binary, for any purpose, commercial or non-commercial, and by any
means.
.
In jurisdictions that recognize copyright laws, the author or authors
of this software dedicate any and all copyright interest in the
software to the public domain. We make this dedication for the benefit
of the public at large and to the detriment of our heirs and
successors. We intend this dedication to be an overt act of
relinquishment in perpetuity of all present and future rights to this
software under copyright law.
.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
IN NO EVENT SHALL THE AUTHORS BE LIABLE FOR ANY CLAIM, DAMAGES OR
OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE,
ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
OTHER DEALINGS IN THE SOFTWARE.
.
For more information, please refer to <http://unlicense.org/>
Files: src/getRSS.h
Copyright: David Robert Nadeau
License: CC-BY-SA-3.0
You are free to:
.
Share — copy and redistribute the material in any medium or format for any
purpose, even commercially.
.
Adapt — remix, transform, and build upon the material for any purpose, even
commercially.
.
The licensor cannot revoke these freedoms as long as you follow the license terms.
.
Under the following terms:
Attribution - You must give appropriate credit , provide a link to the license,
and indicate if changes were made . You may do so in any
reasonable manner, but not in any way that suggests the licensor
endorses you or your use.
.
No additional restrictions - You may not apply legal terms or technological
measures that legally restrict others from doing anything the
license permits.
.
Notices:
You do not have to comply with the license for elements of the material in the
public domain or where your use is permitted by an applicable exception or
limitation.
.
No warranties are given. The license may not give you all of the permissions
necessary for your intended use. For example, other rights such as publicity,
privacy, or moral rights may limit how you use the material.
Comments: http://creativecommons.org/licenses/by/3.0/deed.en_US
Modifications have been made from the original code
Files: debian/*
Copyright: 2023 Andreas Tille <tille@debian.org>
License: BSD-2-clause
License: BSD-2-clause
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
.
* Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
.
* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
| |
| control file for libbifrost0_1.3.0-1_amd64.deb (click to toggle) | |
|---|---|
| Package: | libbifrost0 |
| Source: | bifrost |
| Version: | 1.3.0-1 |
| Architecture: | amd64 |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Installed-Size: | 1414 |
| Depends: | libc6 (>=2.34), libgcc-s1 (>=3.4), libstdc++6 (>=13.1), zlib1g (>=1:1.1.4) |
| Section: | libs |
| Priority: | optional |
| Homepage: | https://github.com/pmelsted/bifrost |
| Description: | library for parallel construction, indexing and querying of de Bruijn graphs Libbifrost is the shared library for the command-line tool bifrost for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in. . * Build, index, color and query the compacted de Bruijn graph * No need to build the uncompacted de Bruijn graph * Reads or assembled genomes as input * Output graph in GFA (can be visualized with Bandage), FASTA or binary * Graph cleaning: short tip clipping, etc. * Multi-threaded * No parameters to estimate with other tools * Exact or approximate k-mer search of queries |
| contents of libbifrost0_1.3.0-1_amd64.deb (click to toggle) | |
|---|---|
drwxr-xr-x root/root 0 2023-11-08 18:53 ./ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/lib/ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/lib/x86_64-linux-gnu/ -rw-r--r-- root/root 1428440 2023-11-08 18:53 ./usr/lib/x86_64-linux-gnu/libbifrost.so.0 drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/share/ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/share/doc/libbifrost0/ -rw-r--r-- root/root 156 2023-11-08 18:53 ./usr/share/doc/libbifrost0/changelog.Debian.gz -rw-r--r-- root/root 1711 2023-10-10 13:54 ./usr/share/doc/libbifrost0/changelog.gz -rw-r--r-- root/root 5698 2023-11-08 18:53 ./usr/share/doc/libbifrost0/copyright | |
| copyright of libbifrost0_1.3.0-1_amd64.deb (click to toggle) | |
|---|---|
NOTE: Copyright is the same as bifrost (bifrost_1.3.0-1_amd64.deb). Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: bifrost
Source: https://github.com/pmelsted/bifrost
Files: *
Copyright: 2018-2023 Pall Melsted, Guillaume Holley
License: BSD-2-clause
Files: src/zstr.hpp
Copyright: 2015 Ontario Institute for Cancer Research
License: BSD-2-clause
Files: src/kseq.h
Copyright: 2008, 2009, 2011 Attractive Chaos <attractor@live.co.uk>
License: MIT
Permission is hereby granted, free of charge, to any person obtaining
a copy of this software and associated documentation files (the
"Software"), to deal in the Software without restriction, including
without limitation the rights to use, copy, modify, merge, publish,
distribute, sublicense, and/or sell copies of the Software, and to
permit persons to whom the Software is furnished to do so, subject to
the following conditions:
.
The above copyright notice and this permission notice shall be
included in all copies or substantial portions of the Software.
.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
Files: src/libpopcnt.h
Copyright: 2016-2017 Kim Walisch, Wojciech Muła
License: BSD-2-clause
Files: src/wyhash.h
Copyright: 2019-2022 Wang Yi <godspeed_china@yeah.net>
License: public_domain
This is free and unencumbered software released into the public domain.
.
Anyone is free to copy, modify, publish, use, compile, sell, or
distribute this software, either in source code form or as a compiled
binary, for any purpose, commercial or non-commercial, and by any
means.
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In jurisdictions that recognize copyright laws, the author or authors
of this software dedicate any and all copyright interest in the
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successors. We intend this dedication to be an overt act of
relinquishment in perpetuity of all present and future rights to this
software under copyright law.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
IN NO EVENT SHALL THE AUTHORS BE LIABLE FOR ANY CLAIM, DAMAGES OR
OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE,
ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
OTHER DEALINGS IN THE SOFTWARE.
.
For more information, please refer to <http://unlicense.org/>
Files: src/getRSS.h
Copyright: David Robert Nadeau
License: CC-BY-SA-3.0
You are free to:
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Share — copy and redistribute the material in any medium or format for any
purpose, even commercially.
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Adapt — remix, transform, and build upon the material for any purpose, even
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The licensor cannot revoke these freedoms as long as you follow the license terms.
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Under the following terms:
Attribution - You must give appropriate credit , provide a link to the license,
and indicate if changes were made . You may do so in any
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No additional restrictions - You may not apply legal terms or technological
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license permits.
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Notices:
You do not have to comply with the license for elements of the material in the
public domain or where your use is permitted by an applicable exception or
limitation.
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No warranties are given. The license may not give you all of the permissions
necessary for your intended use. For example, other rights such as publicity,
privacy, or moral rights may limit how you use the material.
Comments: http://creativecommons.org/licenses/by/3.0/deed.en_US
Modifications have been made from the original code
Files: debian/*
Copyright: 2023 Andreas Tille <tille@debian.org>
License: BSD-2-clause
License: BSD-2-clause
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
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* Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
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* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
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THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
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DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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| |
| control file for libbifrost0-dbgsym_1.3.0-1_amd64.deb (click to toggle) | |
|---|---|
| Package: | libbifrost0-dbgsym |
| Source: | bifrost |
| Version: | 1.3.0-1 |
| Auto-Built-Package: | debug-symbols |
| Architecture: | amd64 |
| Maintainer: | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Installed-Size: | 3727 |
| Depends: | libbifrost0 (=1.3.0-1) |
| Section: | debug |
| Priority: | optional |
| Description: | debug symbols for libbifrost0 |
| Build-Ids: | d7f372bf95c48ccfc644d475683db7a0e1d8e910 |
| contents of libbifrost0-dbgsym_1.3.0-1_amd64.deb (click to toggle) | |
|---|---|
drwxr-xr-x root/root 0 2023-11-08 18:53 ./ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/lib/ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/lib/debug/ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/lib/debug/.build-id/d7/ -rw-r--r-- root/root 3805752 2023-11-08 18:53 ./usr/lib/debug/.build-id/d7/f372bf95c48ccfc644d475683db7a0e1d8e910.debug drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/share/ drwxr-xr-x root/root 0 2023-11-08 18:53 ./usr/share/doc/ lrwxrwxrwx root/root 0 2023-11-08 18:53 ./usr/share/doc/libbifrost0-dbgsym -> libbifrost0 | |
| copyright of libbifrost0-dbgsym_1.3.0-1_amd64.deb (click to toggle) | |
|---|---|
WARNING: No copyright found, please check package manually. | |
Timestamp: 08.11.2023 / 20:12:12 (UTC)