Debian NEW package overview for any2fasta
any2fasta_0.4.2-1_amd64.changes (click to toggle)
Format:1.8
Date:Tue, 01 Nov 2022 16:19:16 +0100
Source:any2fasta
Binary:any2fasta any2fasta-examples
Architecture:source all
Version:0.4.2-1
Distribution:unstable
Urgency:medium
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By:Andreas Tille <tille@debian.org>
Description:
any2fasta  - convert various sequence formats to FASTA
any2fasta-examples - convert various sequence formats to FASTA (example data)
Closes:1023262
Changes:
any2fasta (0.4.2-1) unstable; urgency=medium

  * Initial release (Closes: #1023262)
Files:
01719a3c8bad19aa557abf550e6d7662 2046 science optional any2fasta_0.4.2-1.dsc
00e73b677d57448c24890d6d66ef499a 6695729 science optional any2fasta_0.4.2.orig.tar.gz
b3dc94a54723dc69358ce483049ae84e 2708 science optional any2fasta_0.4.2-1.debian.tar.xz
1210bf0d77edb7f277326c7e681ea9d5 6509508 science optional any2fasta-examples_0.4.2-1_all.deb
c09f06cfa73cdc99c0c7d47586fee3b0 6124 science optional any2fasta_0.4.2-1_all.deb
a14afc2acf117fc573f4cb94e8d76e1e 6321 science optional any2fasta_0.4.2-1_amd64.buildinfo
any2fasta_0.4.2-1.dsc (click to toggle)
Format:3.0 (quilt)
Source:any2fasta
Binary:any2fasta, any2fasta-examples
Architecture:all
Version:0.4.2-1
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:Andreas Tille <tille@debian.org>
Homepage:https://github.com/tseemann/any2fasta
Standards-Version:4.6.1
Vcs-Browser:https://salsa.debian.org/med-team/any2fasta
Vcs-Git:https://salsa.debian.org/med-team/any2fasta.git
Testsuite:autopkgtest
Build-Depends:debhelper-compat (=13)
Package-List:any2fasta deb science optional arch=all any2fasta-examples deb science optional arch=all
Files:
00e73b677d57448c24890d6d66ef499a 6695729 any2fasta_0.4.2.orig.tar.gz
b3dc94a54723dc69358ce483049ae84e 2708 any2fasta_0.4.2-1.debian.tar.xz
lintian 2.104.0 check for any2fasta_0.4.2-1.dsc (click to toggle)
README.source for any2fasta_0.4.2-1.dsc (click to toggle)
No README.source in this package
control file for any2fasta_0.4.2-1_all.deb (click to toggle)
Package:any2fasta
Version:0.4.2-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:21
Depends:perl:any
Section:science
Priority:optional
Homepage:https://github.com/tseemann/any2fasta
Description:
convert various sequence formats to FASTA
 Established tools like readseq and seqret from EMBOSS, both create mangled
 IDs containing | or . characters, and there is no way to fix this behaviour.
 This resultes in inconsitences between .gbk and .fna versions of files in
 pipelines.
 .
 This script uses only core Perl modules, has no other dependencies like
 Bioperl or Biopython, and runs very quickly.
 .
 It supports the following input formats:
 .
  1. Genbank flat file, typically .gb, .gbk, .gbff (starts with LOCUS)
  2. EMBL flat file, typically .embl, (starts with ID)
  3. GFF with sequence, typically .gff, .gff3 (starts with ##gff)
  4. FASTA DNA, typically .fasta, .fa, .fna, .ffn (starts with >)
  5. FASTQ DNA, typically .fastq, .fq (starts with @)
  6. CLUSTAL alignments, typically .clw, .clu (starts with CLUSTAL or MUSCLE)
  7. STOCKHOLM alignments, typically .sth (starts with # STOCKHOLM)
  8. GFA assembly graph, typically .gfa (starts with ^[A-Z]\t)
 .
 Files may be compressed with:
 .
  1. gzip, typically .gz
  2. bzip2, typically .bz2
  3. zip, typically .zip
lintian 2.104.0 check for any2fasta_0.4.2-1_all.deb (click to toggle)
contents of any2fasta_0.4.2-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2022-11-01 15:19 ./
drwxr-xr-x root/root         0 2022-11-01 15:19 ./usr/
drwxr-xr-x root/root         0 2022-11-01 15:19 ./usr/bin/
-rwxr-xr-x root/root      7724 2022-11-01 15:19 ./usr/bin/any2fasta
drwxr-xr-x root/root         0 2022-11-01 15:19 ./usr/share/
drwxr-xr-x root/root         0 2022-11-01 15:19 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-11-01 15:19 ./usr/share/doc/any2fasta/
-rw-r--r-- root/root      3840 2018-10-18 04:07 ./usr/share/doc/any2fasta/README.md
-rw-r--r-- root/root       157 2022-11-01 15:19 ./usr/share/doc/any2fasta/changelog.Debian.gz
-rw-r--r-- root/root       914 2022-11-01 15:19 ./usr/share/doc/any2fasta/copyright
control file for any2fasta-examples_0.4.2-1_all.deb (click to toggle)
Package:any2fasta-examples
Source:any2fasta
Version:0.4.2-1
Architecture:all
Maintainer:Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size:6373
Section:science
Priority:optional
Homepage:https://github.com/tseemann/any2fasta
Description:
convert various sequence formats to FASTA (example data)
 Established tools like readseq and seqret from EMBOSS, both create mangled
 IDs containing | or . characters, and there is no way to fix this behaviour.
 This resultes in inconsitences between .gbk and .fna versions of files in
 pipelines.
 .
 This script uses only core Perl modules, has no other dependencies like
 Bioperl or Biopython, and runs very quickly.
 .
 It supports the following input formats:
 .
  1. Genbank flat file, typically .gb, .gbk, .gbff (starts with LOCUS)
  2. EMBL flat file, typically .embl, (starts with ID)
  3. GFF with sequence, typically .gff, .gff3 (starts with ##gff)
  4. FASTA DNA, typically .fasta, .fa, .fna, .ffn (starts with >)
  5. FASTQ DNA, typically .fastq, .fq (starts with @)
  6. CLUSTAL alignments, typically .clw, .clu (starts with CLUSTAL or MUSCLE)
  7. STOCKHOLM alignments, typically .sth (starts with # STOCKHOLM)
  8. GFA assembly graph, typically .gfa (starts with ^[A-Z]\t)
 .
 Files may be compressed with:
 .
  1. gzip, typically .gz
  2. bzip2, typically .bz2
  3. zip, typically .zip
 .
 This package contains some example data for testing.
lintian 2.104.0 check for any2fasta-examples_0.4.2-1_all.deb (click to toggle)
contents of any2fasta-examples_0.4.2-1_all.deb (click to toggle)
drwxr-xr-x root/root         0 2022-11-01 15:19 ./
drwxr-xr-x root/root         0 2022-11-01 15:19 ./usr/
drwxr-xr-x root/root         0 2022-11-01 15:19 ./usr/share/
drwxr-xr-x root/root         0 2022-11-01 15:19 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-11-01 15:19 ./usr/share/doc/any2fasta/
drwxr-xr-x root/root         0 2022-11-01 15:19 ./usr/share/doc/any2fasta/examples/
-rw-r--r-- root/root       619 2018-10-18 04:07 ./usr/share/doc/any2fasta/examples/test.clw
-rw-r--r-- root/root      3610 2018-10-18 04:07 ./usr/share/doc/any2fasta/examples/test.embl
-rw-r--r-- root/root     17854 2018-10-18 04:07 ./usr/share/doc/any2fasta/examples/test.fna.gz
-rw-r--r-- root/root    176153 2018-10-18 04:07 ./usr/share/doc/any2fasta/examples/test.fq.gz
-rw-r--r-- root/root   3071491 2018-10-18 04:07 ./usr/share/doc/any2fasta/examples/test.gbk.gz
-rw-r--r-- root/root   1570339 2018-10-18 04:07 ./usr/share/doc/any2fasta/examples/test.gfa.gz
-rw-r--r-- root/root   1665133 2018-10-18 04:07 ./usr/share/doc/any2fasta/examples/test.gff.gz
-rw-r--r-- root/root      1960 2018-10-18 04:07 ./usr/share/doc/any2fasta/examples/test.noseq.gff
-rw-r--r-- root/root      1106 2018-10-18 04:07 ./usr/share/doc/any2fasta/examples/test.sth
drwxr-xr-x root/root         0 2022-11-01 15:19 ./usr/share/doc/any2fasta-examples/
-rw-r--r-- root/root       278 2022-11-01 15:19 ./usr/share/doc/any2fasta-examples/README.test
-rw-r--r-- root/root       157 2022-11-01 15:19 ./usr/share/doc/any2fasta-examples/changelog.Debian.gz
-rw-r--r-- root/root       914 2022-11-01 15:19 ./usr/share/doc/any2fasta-examples/copyright
-rw-r--r-- root/root       573 2022-11-01 15:19 ./usr/share/doc/any2fasta-examples/run-unit-test

Timestamp: 01.11.2022 / 17:01:53 (UTC)